Search Results (10)

The infectious agent for African trypanosomiasis, Trypanosoma brucei, possesses a unique and essential translocase of the mitochondrial inner membrane, known as the TbTIM17 complex. TbTim17 associates with six small TbTims (TbTim9, TbTim10, TbTim11, TbTim12, TbTim13, and TbTim8/13). However, the interaction patterns of these smaller TbTims with each other and TbTim17 are not clear. Through yeast two-hybrid (Y2H) and co-immunoprecipitation analyses, we demonstrate that all six small TbTims interact with each other. Stronger interactions were found among TbTim8/13, TbTim9, and TbTim10. However, TbTim10 shows weaker associations with TbTim13, which has a stronger connection with TbTim17. Each of the small TbTims also interacts strongly with the C-terminal region of TbTim17. RNAi studies indicated that among all small TbTims, TbTim13 is most crucial for maintaining the steady-state levels of the TbTIM17 complex. Further analysis of the small TbTim complexes by size exclusion chromatography revealed that each small TbTim, except for TbTim13, is present in ~70 kDa complexes, possibly existing in heterohexameric forms. In contrast, TbTim13 is primarily present in the larger complex (>800 kDa) and co-fractionates with TbTim17. Altogether, our results demonstrate that, relative to other eukaryotes, the architecture and function of the small TbTim complexes are specific to T. brucei. Full article

This research aimed to apply the geospatial techniques and Analytical Hierarchy Process (AHP) approach to find vulnerable areas in terms of flooding in the Neluwa area, Sri Lanka. The study incorporated nine relevant criteria for the vulnerability classification under three sub-criteria; the built environment, physical environment, and socio-economic environment. Under the built environment, road networks and buildings were chosen as sub-criteria. The Normalized Difference Vegetation Index (NDVI), slope, elevation, water bodies, and stream density were taken as physical criteria. Land use and population density were considered as socio-economic criteria. All the criteria are set correctly in raster data, and their contents were well adduced. The study consisted of the use of different levels of criteria and combinations of different processes. The analytical results reveal that 14.24% and 30.24% of the total area are at a very-high risk and high risk for flooding, respectively. Only 5.17% of the land was classified as a risk-free area. Eastern, central, and western divisions of the study area are highly vulnerable to floods due to their low slopes. Based on the produced maps, the spatial extents and levels of risk were systematically identified. Data obtained through qualitative judgments related to the field were validated based on the approach used. The potential of this approach is effective in assessing the spatial vulnerability of these flood-affected areas. Using such criteria and a model-based approach will be constructive in identifying different flood scenarios and in providing a remunerative guideline for potential anticipatory measures and better land-based planning in the area. Full article

Rapid urbanization and population growth are stressing the present agricultural systems and could threaten food security in the near future. Sustainable development in agriculture is a way out to such enormously growing food demand. Plant growth-promoting bacteria (PGPB) are considered pivotal to providing adequate nutrition and health to plants and maintaining soil microbial dynamics. In the present study, municipal solid waste composts (MSWC) were studied for the presence of PGPB and their growth-promoting characteristics such as ammonium production, siderophores production, phosphorus solubilization and potassium solubilization, IAA (indole acetic acid), and HCN production. Four promising isolates were chosen and identified through 16S rRNA sequencing as Bacillus sp. strain L5-1, Bacillus pumilus strain EE107-P5, Bacillus sp. strain LSRBMoFPIKRGCFTRI6 and Bacillus sp. strain LPOC3. The potential of isolates is validated using Solanum lycopersicum (tomato) and was found to improve its growth significantly. The findings indicated the presence of potential Bacillus strains in MSWCs, and these composts can be utilized as biofertilizers for urban agricultural practices. However, studies concerning their impact on other crops’ growth and health are still underdeveloped. Since MSWCs might carry hazardous metals or chemicals, their evaluation for the safe application on the crops should also be assessed. Full article

Rapid urbanization is one of the key factors that leads to defragmentation and the shrinking of agricultural land. It further leads to the generation of an ample amount of municipal waste. Several technologies have emerged in the past for its utilization, and in this regard, composting is one of the conventional approaches gaining popularity in modern agriculture. To overcome the possible criticality of intense urbanization, the concept of urban agriculture is taking shape. Municipal solid waste compost (MSWC) has been popularly explored for the soil amendments and nutritional requirements of crops. With this, the assessment of soil pollution (due to the heavy metals presently found in MSWC) is a required step for its safe application in agriculture. The present study aims at assessing the utilization of MSWC (in different ratios) to amend the soil and its impact on the growth and yield of brinjal (Solanum melongena), tomato (Solanum lycopersicum), and okra (Abelmoschus esculentus). The study also explored the uptake of heavy metals by plants and their risk to human consumption. The findings suggested that MSWC amendments upgraded the physio-chemical properties of soil, including organic matter (OM) and micronutrients, and increased the heavy metal concentrations in soil. Heavy metal analysis underlined the presence of several heavy metals both in soil and crops. Total metal concentration in soil increased with increased MSWC dosage. Concerning metal uptake by crop plants, 25% of MSWC was found to impart metal concentrations within permissible values in edible parts of crops. On the contrary, 50%, 75%, and 100% compost showed higher metal concentrations in the crops. A Health Risk Index (HRI) of less than 1 was found to be associated with soil amended with 25% MSWC. Our study implies that MSWC significantly improved the growth and yield of crops, and it can be considered an alternative to chemical fertilizer but only in a safer ratio (≤25%). However, further studies are required, especially on field conditions to validate the findings regarding metal accumulation. Full article

Trypanosoma brucei, the causative agent for human African trypanosomiasis, is an emerging ergosterol-dependent parasite that produces chokepoint enzymes, sterol methyltransferases (SMT), not synthesized in their animal hosts that can regulate cell viability. Here, we report the lethal effects of two recently described natural product antimetabolites that disrupt Acanthamoeba sterol methylation and growth, cholesta-5,7,22,24-tetraenol (CHT) and ergosta-5,7,22,24(28)-tetraenol (ERGT) that can equally target T. brucei. We found that CHT/ERGT inhibited cell growth in vitro, yielding EC₅₀ values in the low nanomolar range with washout experiments showing cidal activity against the bloodstream form, consistent with their predicted mode of suicide inhibition on SMT activity and ergosterol production. Antimetabolite treatment generated altered T. brucei cell morphology and death rapidly within hours. Notably, in vivo ERGT/CHT protected mice infected with T. brucei, doubling their survival time following daily treatment for 8–10 days at 50 mg/kg or 100 mg/kg. The current study demonstrates a new class of lead antibiotics, in the form of common fungal sterols, for antitrypanosomal drug development. Full article

Mitochondria are essential in eukaryotes. Besides producing 80% of total cellular ATP, mitochondria are involved in various cellular functions such as apoptosis, inflammation, innate immunity, stress tolerance, and Ca²⁺ homeostasis. Mitochondria are also the site for many critical metabolic pathways and are integrated into the signaling network to maintain cellular homeostasis under stress. Mitochondria require hundreds of proteins to perform all these functions. Since the mitochondrial genome only encodes a handful of proteins, most mitochondrial proteins are imported from the cytosol via receptor/translocase complexes on the mitochondrial outer and inner membranes known as TOMs and TIMs. Many of the subunits of these protein complexes are essential for cell survival in model yeast and other unicellular eukaryotes. Defects in the mitochondrial import machineries are also associated with various metabolic, developmental, and neurodegenerative disorders in multicellular organisms. In addition to their canonical functions, these protein translocases also help maintain mitochondrial structure and dynamics, lipid metabolism, and stress response. This review focuses on the role of Tim50, the receptor component of one of the TIM complexes, in different cellular functions, with an emphasis on the Tim50 homologue in parasitic protozoan Trypanosoma brucei. Full article

The translocases of the mitochondrial outer and inner membranes, the TOM and TIMs, import hundreds of nucleus-encoded proteins into mitochondria. TOM and TIMs are multi-subunit protein complexes that work in cooperation with other complexes to import proteins in different sub-mitochondrial destinations. The overall architecture of these protein complexes is conserved among yeast/fungi, animals, and plants. Recent studies have revealed unique characteristics of this machinery, particularly in the eukaryotic supergroup Excavata. Despite multiple differences, homologues of Tim17, an essential component of one of the TIM complexes and a member of the Tim17/Tim22/Tim23 family, have been found in all eukaryotes. Here, we review the structure and function of Tim17 and Tim17-containing protein complexes in different eukaryotes, and then compare them to the single homologue of this protein found in Trypanosoma brucei, a unicellular parasitic protozoan. Full article

A coumarin-benzothiazole ratiometric probe of ATP was designed and synthesized. The probe is based on incorporation of benzothiazole scaffold as a donor and coumarin nucleus as an acceptor in a single Förster resonance energy transfer/fluorescence resonance energy transfer (FRET) sensing platform. The sensor can detect ATP in aqueous solution with high selectivity over other nucleotide polyphosphate (NPP) anions. Binding of ATP to the sensor results in modulation of FRET efficiency between the donor and the acceptor which afforded a linear relationship between FRET signal and ATP (0.1–10 μM). A limit of detection (LOD) of 94.5 nM was quantified for FRET sensing of ATP by the probe. In addition, Job plot analysis revealed 1:1 binding interaction between the probe and ATP. The FRET probe was successfully utilized in monitoring ATP hydrolysis by apyrase in aqueous solution. Full article

The protective effect of 3-mercaptoalkyl derivatives of 5-amino-1H-1,2,4-triazole against corrosion of α-brass in a chloride media was studied using polarization curves, electrochemical impedance spectroscopy, and full-scale corrosion testing. The brass electrode remains passive up to the activation potential, which is much higher than in solutions without organic additives, and it increases with the concentration of the inhibitor. The protection degree of all the studied inhibitors reaches its maximum of over 99% in solutions with the concentration of the inhibitor C_inh ≥ 0.10 mM. The protective effect increases with the length of the alkyl chain. All the studied derivatives are effective against atmospheric corrosion of α-brass. A protective film is formed on the brass surface, and it most probably includes oxides as well as complex compounds of zinc and copper with the molecules of the inhibitors. The impedance spectroscopy demonstrated that the presence of the inhibitor results in a decrease in the double-layer capacitance and an increase in the polarization resistance, which proves that the protective film actually forms on the brass surface. The quantum chemical analysis of the optimized molecular structures demonstrates that all the studied inhibitors should have a similar protective effect, which agrees with the experimental results. Full article