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Authors = Aly M. El-Sayed

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19 pages, 783 KiB  
Article
Variants in Nucleotide Sequences; Gene Expression; and Hematological, Immune, and Antioxidant Biomarkers Linked to Pneumonia Risk in Holstein Calves
by Ahmed El-Sayed, Attia Eissa, Doaa Ebrahim, Ahmed Ateya, Hossam Gadalla, Hanan M. Alharbi, Khairiah M. Alwutayd, Manal A. Babaker and Aya Aly Elzeer
Vet. Sci. 2025, 12(7), 620; https://doi.org/10.3390/vetsci12070620 - 26 Jun 2025
Viewed by 700
Abstract
Pneumonia is a major issue that affects calves’ health and performance and causes numerous losses despite treatment. Investigating genetic and molecular differences, as well as immunological and antioxidant responses, in calves at risk for pneumonia was the aim of this study. A total [...] Read more.
Pneumonia is a major issue that affects calves’ health and performance and causes numerous losses despite treatment. Investigating genetic and molecular differences, as well as immunological and antioxidant responses, in calves at risk for pneumonia was the aim of this study. A total of 225 calves were studied, including 180 Holstein calves with respiratory signs and 45 calves that were apparently healthy. Blood samples were collected for CBC, RNA extractions, and immunological and antioxidant analysis. In contrast to the control group, the pneumonic one showed a considerable (p < 0.05) increase in the expression levels of cytokines and antioxidant genes IL1α, IL-1β, IL-6, IFN-γ, TNF-α, and NOX4. In contrast, the values of IL10, PRDX6, ATG7, and NDUFS6 were in the opposite range. The pneumonic and healthy calves were found to differ in the nucleotide sequences of the genes under analysis. In pneumonic calves, a substantial (p ˂0.05) reduction was detected in RBCs, Hb count, PCV%, and lymphocytes count, and a notable (p ˂ 0.05) increase in WBCs and neutrophil count was correlated with healthy control calves. The findings of the serum profile showed that there was a meaningful (p ˂ 0.05) rise in the serum values of IL-1α, IL-1β, IL-6, TNF-α, IFN-γ, and MDA, with significant reductions in the SOD, GSH, TAC, and IL-10 in the pneumonic compared to the healthy calves. Our results provide valuable information about the nucleotide sequence, gene expression, and serum profile differences of putative indicators for pneumonia in calves. This could be applied in monitoring calves’ pneumonia through the discriminate breeding of naturally resistant animals. Full article
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35 pages, 3578 KiB  
Review
The Role of the Tumor Microenvironment (TME) in Advancing Cancer Therapies: Immune System Interactions, Tumor-Infiltrating Lymphocytes (TILs), and the Role of Exosomes and Inflammasomes
by Atef M. Erasha, Hanem EL-Gendy, Ahmed S. Aly, Marisol Fernández-Ortiz and Ramy K. A. Sayed
Int. J. Mol. Sci. 2025, 26(6), 2716; https://doi.org/10.3390/ijms26062716 - 18 Mar 2025
Cited by 3 | Viewed by 1825
Abstract
Understanding how different contributors within the tumor microenvironment (TME) function and communicate is essential for effective cancer detection and treatment. The TME encompasses all the surroundings of a tumor such as blood vessels, fibroblasts, immune cells, signaling molecules, exosomes, and the extracellular matrix [...] Read more.
Understanding how different contributors within the tumor microenvironment (TME) function and communicate is essential for effective cancer detection and treatment. The TME encompasses all the surroundings of a tumor such as blood vessels, fibroblasts, immune cells, signaling molecules, exosomes, and the extracellular matrix (ECM). Subsequently, effective cancer therapy relies on addressing TME alterations, known drivers of tumor progression, immune evasion, and metastasis. Immune cells and other cell types act differently under cancerous conditions, either driving or hindering cancer progression. For instance, tumor-infiltrating lymphocytes (TILs) include lymphocytes of B and T cell types that can invade malignancies, bringing in and enhancing the ability of immune system to recognize and destroy cancer cells. Therefore, TILs display a promising approach to tackling the TME alterations and have the capability to significantly hinder cancer progression. Similarly, exosomes and inflammasomes exhibit a dual effect, resulting in either tumor progression or inhibition depending on the origin of exosomes, type of inflammasome and tumor. This review will explore how cells function in the presence of a tumor, the communication between cancer cells and immune cells, and the role of TILs, exosomes and inflammasomes within the TME. The efforts in this review are aimed at garnering interest in safer and durable therapies for cancer, in addition to providing a promising avenue for advancing cancer therapy and consequently improving survival rates. Full article
(This article belongs to the Special Issue The Role of Inflammasomes in Human Disease)
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17 pages, 8875 KiB  
Article
Effect of the Si Content on the Dry and Wet Sliding Wear Behavior of the Developed Ti-15Mo-(0-2) Si Alloys for Biomedical Applications
by Mohamed M. El-Sayed Seleman, Sabbah Ataya, Hayam A. Aly, Barun Haldar, Naser A. Alsaleh, Mohamed M. Z. Ahmed, Ashraf Bakkar and Khaled M. Ibrahim
Metals 2023, 13(11), 1861; https://doi.org/10.3390/met13111861 - 8 Nov 2023
Cited by 5 | Viewed by 1982
Abstract
The durability of a metallic biomaterial to withstand weight loss is a key factor in determining its service life and performance. Therefore, it is essential to create biomaterials with high wear resistance to ensure the biomaterial has a long service life. Thus, this [...] Read more.
The durability of a metallic biomaterial to withstand weight loss is a key factor in determining its service life and performance. Therefore, it is essential to create biomaterials with high wear resistance to ensure the biomaterial has a long service life. Thus, this study aims to explore the dry and wet sliding wear characteristics of the developed Ti-15Mo-xSi as-cast alloys (where x equals 0, 0.5, 1, 1.5, and 2 wt.%) in order to assess the impact of the Si addition on the microstructure, mechanical properties, and wear resistance and to consider them for biomedical applications. The wear experiments were conducted using a pin-on-desk wear testing machine at a load of 20 N and a sliding distance of 1000 m with and without applying simulated body fluid (SBF). Different techniques were utilized in the evaluation of the developed Ti-15Mo-xSi alloys. The results showed that significant grain refining was attained with the Si addition. The hardness, compressive strength, and wear resistance of the Ti-15Mo-xSi as-cast alloys increased with the increase in Si content. The Ti-15Mo-2Si as-cast alloy exhibited the highest dry and wet wear resistance of all the Ti-15Mo-xSi alloys. The worn surfaces were investigated, the roughness and main features were reported, and the wear mechanisms were also discussed. Full article
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25 pages, 910 KiB  
Article
Management Practices of Bovine Mastitis and Milk Quality on Egyptian Dairies
by Heba S. Farag, Sharif S. Aly, Karima M. Fahim, Adel A. Fayed, Essam M. Abdelfattah, Samah M. El-Sayed, Yamen M. Hegazy and Wagdy R. ElAshmawy
Vet. Sci. 2023, 10(10), 629; https://doi.org/10.3390/vetsci10100629 - 21 Oct 2023
Cited by 5 | Viewed by 3468
Abstract
Milk production continues to be the main source of income for dairy producers, and mastitis continues to be the major health challenge for dairy cows worldwide. The objective of the current study was to describe the different management practices implemented in Egyptian dairies, [...] Read more.
Milk production continues to be the main source of income for dairy producers, and mastitis continues to be the major health challenge for dairy cows worldwide. The objective of the current study was to describe the different management practices implemented in Egyptian dairies, which may influence mastitis and improve milk quality. An in-person survey was completed with herd managers and owners of 20 Egyptian dairies selected using a stratified random sample from four of Egypt’s milk sheds. The questionnaire included 80 questions that inquired about herd demographics, mastitis status and control, milking practices, and management practices of the study dairies. Statistical analyses included descriptive statistics, multiple factor analysis (MFA), and hierarchical clustering to identify the important principal components and different dairy clusters. Of the surveyed herds, 69.50% had less than 500 lactating cows, with Holstein as the main cow breed. The reported average milk production on the study herds was 31.1 (SE ± 1.10) Kg/cow/day. Housing of lactating, dry, and close-up cows was in open lots. The majority of the dairies milked cows were three times per day (90.63%), the remaining milked cows four (5.00%) or a mix of four and three times per day. Furthermore, herringbone parlor design was the most common parlor design (66.79%) in the study dairies. The most common disinfectants used for both pre- and post-milking teat dip were iodine-based, 90.0% and 95.0%, respectively, while 52.16% of the dairies reported that their milkers wore gloves during milking. The reported mean annual percentage of mastitis was 52.3%, as a percent of the milking herd. The study dairies reported the inspection of udder health through either visual inspection (95.00%), udder hygiene score (86.88%), teat end score (71.88%), and/or using CMT (54.91%). Contagious mastitis pathogens were reported in 45.2% of the study herds. More than 50% of the study herds relied on importing pregnant cows or pregnant heifers as replacements. Multiple factor analysis identified 20 questions and represented 5 components of variability related to mastitis on dairies. The current survey of Egyptian dairies described the herd demographics and different management practices related to mastitis control and prevention. All the study dairies relied on the blanket intramammary antimicrobial drugs at dry off when current research elsewhere has identified selective dry cow therapy as an integral component of antimicrobial stewardship on dairies. Further research is required to identify the association between different management factors and the occurrence of mastitis. Full article
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17 pages, 9670 KiB  
Article
Effect of Si Content on the Thermal Expansion of Ti15Mo(0–2 Si) Biomaterial Alloys during Different Heating Rates
by Hayam A. Aly, Mohamed M. El-Sayed Seleman, Ashraf Bakkar, Ibrahim Albaijan, Mohamed M. Z. Ahmed and Khaled M. Ibrahim
Materials 2023, 16(13), 4768; https://doi.org/10.3390/ma16134768 - 1 Jul 2023
Cited by 10 | Viewed by 1753
Abstract
Thermal expansion measurements were used to characterize phase transformations in metastable β-Ti alloys (Ti15MoxSi) without and with various Si additions (where x = 0, 0.5, 1.0, 1.5, and 2 in wt.%) during linear heating at two heating rates of 5 and 10 °C/min [...] Read more.
Thermal expansion measurements were used to characterize phase transformations in metastable β-Ti alloys (Ti15MoxSi) without and with various Si additions (where x = 0, 0.5, 1.0, 1.5, and 2 in wt.%) during linear heating at two heating rates of 5 and 10 °C/min up to 850 °C. For this study, five alloys were developed and examined in terms of their presence phases, microstructures, and starting and final transformation temperatures. According to the results, all of the as-cast samples primarily include an equiaxed β-Ti phase. The influence of phase transformation on the material dimensions was discussed and compared with the variations in Si contents. The transformation was investigated using a dilatometric technique for the developed alloys during continuous heating and cooling. The dilatometric curve of heating revealed two distinct reflection points as the heating temperature increased. The starting transformation temperature (Ts) to obtain the ω-phase was reported at 359 °C without Si addition; whereas the final transformation temperature (Tf) of the dissolution of α-phase was obtained at 572 °C at a heating rate of 10 °C/min. At 2 wt.% Si, the first derivative curves reported Ts and Tf transforming temperatures of 314–565 °C (at a 5 °C/min heating rate) and 270–540 °C (at a 10 °C/min heating rate), respectively. The Ts and Tf transforming temperatures were significantly decreased with Si additions, which decreased the β-transus temperature. Moreover, the thermal expansion coefficient curves of the investigated alloys without and with 2 wt.% Si were studied. The transformation heating curves have an S-shaped pattern, according to the results. Full article
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19 pages, 1057 KiB  
Article
Impacts of Gum Arabic and Polyvinylpyrrolidone (PVP) with Salicylic Acid on Peach Fruit (Prunus persica) Shelf Life
by Mohamed A. Taher, A. A. Lo’ay, Mostafa Gouda, Safaa A. Limam, Mohamed F. M. Abdelkader, Samah O. Osman, Mohammad Fikry, Esmat F. Ali, Sayed. Y. Mohamed, Hoda A. Khalil, Diaa O. El-Ansary, Sherif F. El-Gioushy, Hesham S. Ghazzawy, Aly M. Ibrahim, Mahmoud F. Maklad, Mohamed A. Abdein and Dalia M. Hikal
Molecules 2022, 27(8), 2595; https://doi.org/10.3390/molecules27082595 - 18 Apr 2022
Cited by 24 | Viewed by 4035
Abstract
Peaches are grown in many Egyptian orchards for local and global fresh market sales. The interior fruit tissue breakdown (IFTB), often resulting in decayed peaches, is a severe problem during marketing. Therefore, to minimize FTB of peaches, in this study, gum arabic (GA) [...] Read more.
Peaches are grown in many Egyptian orchards for local and global fresh market sales. The interior fruit tissue breakdown (IFTB), often resulting in decayed peaches, is a severe problem during marketing. Therefore, to minimize FTB of peaches, in this study, gum arabic (GA) and polyvinylpyrrolidone (PVP) were mixed with different concentrations of salicylic acid (SA) (0, 1, and 2 mM) and were applied as edible coating to extend the shelf life of peach fruits. Mature peaches were selected and harvested when peaches reached total soluble solid content (SSC: 8.5%) and fruit firmness of about 47 N. Fruits were coated and stored at room temperature (26 ± 1 °C and air humidity 51 ± 1%) for 10 days during two seasons: 2020 and 2021. Fruit coated with GA/PVP-SA 2 mM showed a significant (p < 0.05) inhibition in degrading enzyme activities (CWDEs), such as lipoxygenase (LOX), cellulase (CEL), and pectinase (PT), compared to uncoated and coated fruits during the shelf-life period. Hence, cell wall compartments were maintained. Consequently, there was a reduction in browning symptoms in fruits by inhibiting polyphenol oxidase (PPO) and phenylalanine ammonia-lyase (PAL) activities. Thus, the fruit skin browning index showed almost no symptoms. The lipid peroxidation process and ionic permeability declined as well. The result suggests that, by applying GA/PVP-SA 2 mM as an edible coating, fruit tissue breakdown can be minimized, and the shelf life of peach can be extended up to 10 days without symptoms of tissue breakdown. Full article
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12 pages, 3189 KiB  
Article
The Design and Optimization of an Anti-Reflection Coating and an Intermediate Reflective Layer to Enhance Tandem Solar Cell Photons Capture
by Hassan Sayed, Z. S. Matar, M. Al-Dossari, A. F. Amin, N. S. Abd El-Gawaad and Arafa H. Aly
Crystals 2022, 12(1), 57; https://doi.org/10.3390/cryst12010057 - 31 Dec 2021
Cited by 21 | Viewed by 4793
Abstract
We have theoretically demonstrated an efficient way to improve the optical properties of an anti-reflection coating (ARC) and an intermediate reflective layer (IRL) to enhance tandem solar cell efficiency by localizing the incident photons’ energy on a suitable sub-cell. The optimum designed ARC [...] Read more.
We have theoretically demonstrated an efficient way to improve the optical properties of an anti-reflection coating (ARC) and an intermediate reflective layer (IRL) to enhance tandem solar cell efficiency by localizing the incident photons’ energy on a suitable sub-cell. The optimum designed ARC from a one-dimensional ternary photonic crystal, consisting of a layer of silicon oxynitride (SiON), was immersed between two layers of (SiO2); thicknesses were chosen to be 98 nm, 48 nm, and 8 nm, respectively. The numerical results show the interesting transmission properties of the anti-reflection coating on the viable and near IR spectrum. The IRL was designed from one-dimensional binary photonic crystals and the constituent materials are Bi4Ge3O12 and μc-SiOx: H with refractive indexes was 2.05, and 2.8, respectively. The numbers of periods were set to 10. Thicknesses: d1 = 62 nm and d2 = 40 nm created a photonic bandgap (PBG) in the range of [420 nm: 540 nm]. By increasing the second material thickness to 55 nm, and 73 nm, the PBG shifted to longer wavelengths: [520 nm: 630 nm], and [620 nm: 730 nm], respectively. Thus, by stacking the three remaining structures, the PBG widened and extended from 400 nm to 730 nm. The current theoretical and simulation methods are based on the fundamentals of the transfer matrix method and finite difference time domain method. Full article
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26 pages, 3807 KiB  
Article
Comprehensive Insight into Lake Nasser Environment: Water Quality and Biotic Communities—A Case Study before Operating the Renaissance Dam
by Mohamed E. Goher, Agnieszka Napiórkowska-Krzebietke, Walid Aly, Seliem M. El-Sayed, Usama M. Tahoun, Mohamed A. Fetouh, Mahmoud H. Hegab, Amany M. Haroon, Soaad A. Sabae, Eman I. Abdel-Aal, Marian G. Nassif and Abd Ellatif M. Hussian
Water 2021, 13(16), 2195; https://doi.org/10.3390/w13162195 - 11 Aug 2021
Cited by 20 | Viewed by 5786
Abstract
This study focused on the monitoring and assessment of aquatic ecosystem functioning based on the abiotic and biotic features of Lake Nasser in the post-flood and pre-flood periods as the last ones before water storing behind the Grand Ethiopian Renaissance Dam. The physicochemical [...] Read more.
This study focused on the monitoring and assessment of aquatic ecosystem functioning based on the abiotic and biotic features of Lake Nasser in the post-flood and pre-flood periods as the last ones before water storing behind the Grand Ethiopian Renaissance Dam. The physicochemical parameters, distribution and structure of biotic communities, including bacteria, phytoplankton, zooplankton, macrophytes, epiphytes and fish were analyzed at 15 sites. The values of most parameters (primarily temperature, total suspended solids, pH, orthophosphates, carbonates, sulphates and some cations) were higher in the pre-flood period, whereas higher values of conductivity, total dissolved solids, total solids, nitrites, nitrates, chemical oxygen demand, bicarbonates and chlorophyll a were recorded in the post-flood period. Cyanobacteria-dominated phytoplankton and total coliform bacteria were more abundant in the pre-flood period, and especially at sites 10–15, whereas higher abundances of zooplankton were recorded in the post-flood period. All these changes in parameters were significantly differentiated, and only the concentrations of dissolved oxygen, biochemical oxygen demand, ammonium and silicates were at similar level in both periods. The study also indicated that environmental factors had affected the macrophyte distribution and the adaptation of the invasive species Myriophyllum spicatum to thrive under different environmental factors in the lake. Besides, macrophytes provided the habitat to other aquatic organisms, especially epiphytes, and also helped maintaining the good water quality, nutrient cycling and stabilizing rivers’ and lakes’ banks. Generally, these conditions were rather favorable for biological processes and fish production. Full article
(This article belongs to the Special Issue Phytoplankton and Phytobenthos: From Freshwater to Marine Ecosystems)
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20 pages, 4030 KiB  
Article
In Vitro Inhibitory Analysis of Rationally Designed siRNAs against MERS-CoV Replication in Huh7 Cells
by Sherif Aly El-Kafrawy, Sayed Sartaj Sohrab, Zeenat Mirza, Ahmed M. Hassan, Fatima Alsaqaf and Esam Ibraheem Azhar
Molecules 2021, 26(9), 2610; https://doi.org/10.3390/molecules26092610 - 29 Apr 2021
Cited by 11 | Viewed by 2569
Abstract
MERS-CoV was identified for the first time in Jeddah, Saudi Arabia in 2012 in a hospitalized patient. This virus subsequently spread to 27 countries with a total of 939 deaths and 2586 confirmed cases and now has become a serious concern globally. Camels [...] Read more.
MERS-CoV was identified for the first time in Jeddah, Saudi Arabia in 2012 in a hospitalized patient. This virus subsequently spread to 27 countries with a total of 939 deaths and 2586 confirmed cases and now has become a serious concern globally. Camels are well known for the transmission of the virus to the human population. In this report, we have discussed the prediction, designing, and evaluation of potential siRNA targeting the ORF1ab gene for the inhibition of MERS-CoV replication. The online software, siDirect 2.0 was used to predict and design the siRNAs, their secondary structure and their target accessibility. ORF1ab gene folding was performed by RNAxs and RNAfold software. A total of twenty-one siRNAs were selected from 462 siRNAs according to their scoring and specificity. siRNAs were evaluated in vitro for their cytotoxicity and antiviral efficacy in Huh7 cell line. No significant cytotoxicity was observed for all siRNAs in Huh7 cells. The in vitro study showed the inhibition of viral replication by three siRNAs. The data generated in this study provide preliminary and encouraging information to evaluate the siRNAs separately as well as in combination against MERS-CoV replication in other cell lines. The prediction of siRNAs using online software resulted in the filtration and selection of potential siRNAs with high accuracy and strength. This computational approach resulted in three effective siRNAs that can be taken further to in vivo animal studies and can be used to develop safe and effective antiviral therapies for other prevalent disease-causing viruses. Full article
(This article belongs to the Special Issue Antiviral Agents for RNA-Virus Infection)
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21 pages, 2016 KiB  
Article
Energy-Efficient Task Partitioning for Real-Time Scheduling on Multi-Core Platforms
by Manal A. El Sayed, El Sayed M. Saad, Rasha F. Aly and Shahira M. Habashy
Computers 2021, 10(1), 10; https://doi.org/10.3390/computers10010010 - 8 Jan 2021
Cited by 24 | Viewed by 6190
Abstract
Multi-core processors have become widespread computing engines for recent embedded real-time systems. Efficient task partitioning plays a significant role in real-time computing for achieving higher performance alongside sustaining system correctness and predictability and meeting all hard deadlines. This paper deals with the problem [...] Read more.
Multi-core processors have become widespread computing engines for recent embedded real-time systems. Efficient task partitioning plays a significant role in real-time computing for achieving higher performance alongside sustaining system correctness and predictability and meeting all hard deadlines. This paper deals with the problem of energy-aware static partitioning of periodic, dependent real-time tasks on a homogenous multi-core platform. Concurrent access of the tasks to shared resources by multiple tasks running on different cores induced a higher blocking time, which increases the worst-case execution time (WCET) of tasks and can cause missing the hard deadlines, consequently resulting in system failure. The proposed blocking-aware-based partitioning (BABP) algorithm aims to reduce the overall energy consumption while avoiding deadline violations. Compared to existing partitioning strategies, the proposed technique achieves more energy-saving. A series of experiments test the capabilities of the suggested algorithm compared to popular heuristics partitioning algorithms. A comparison was made between the most used bin-packing algorithms and the proposed algorithm in terms of energy consumption and system schedulability. Experimental results demonstrate that the designed algorithm outperforms the Worst Fit Decreasing (WFD), Best Fit Decreasing (BFD), and Similarity-Based Partitioning (SBP) algorithms of bin-packing algorithms, reduces the energy consumption of the overall system, and improves schedulability. Full article
(This article belongs to the Special Issue Real-Time Systems in Emerging IoT-Embedded Applications)
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19 pages, 2325 KiB  
Article
Sensory Metabolite Profiling in a Date Pit Based Coffee Substitute and in Response to Roasting as Analyzed via Mass Spectrometry Based Metabolomics
by Mohamed A. Farag, Asmaa M. Otify, Aly M. El-Sayed, Camilia G. Michel, Shaimaa A. ElShebiney, Anja Ehrlich and Ludger A. Wessjohann
Molecules 2019, 24(18), 3377; https://doi.org/10.3390/molecules24183377 - 17 Sep 2019
Cited by 19 | Viewed by 4451
Abstract
Interest in developing coffee substitutes is on the rise, to minimizing its health side effects. In the Middle East, date palm (Phoenix dactylifera L.) pits are often used as a coffee substitute post roasting. In this study, commercially-roasted date pit products, along [...] Read more.
Interest in developing coffee substitutes is on the rise, to minimizing its health side effects. In the Middle East, date palm (Phoenix dactylifera L.) pits are often used as a coffee substitute post roasting. In this study, commercially-roasted date pit products, along with unroasted and home-prepared roasted date pits, were subjected to analyses for their metabolite composition, and neuropharmacological evaluation in mice. Headspace SPME-GCMS and GCMS post silylation were employed for characterizing its volatile and non-volatile metabolite profile. For comparison to roasted coffee, coffee product was also included. There is evidence that some commercial date pit products appear to contain undeclared additives. SPME headspace analysis revealed the abundance of furans, pyrans, terpenoids and sulfur compounds in roasted date pits, whereas pyrroles and caffeine were absent. GCMS-post silylation employed for primary metabolite profiling revealed fatty acids’ enrichment in roasted pits versus sugars’ abundance in coffee. Biological investigations affirmed that date pit showed safer margin than coffee from its LD50, albeit it exhibits no CNS stimulant properties. This study provides the first insight into the roasting impact on the date pit through its metabolome and its neuropharmacological aspects to rationalize its use as a coffee substitute. Full article
(This article belongs to the Special Issue Bioactives and Functional Ingredients in Foods and Beverages)
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