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Authors = Albert Comelli ORCID = 0000-0002-9290-6103

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17 pages, 1158 KiB  
Review
An Update on DOTA-Peptides PET Imaging and Potential Advancements of Radioligand Therapy in Intracranial Meningiomas
by Viviana Benfante, Ignazio Gaspare Vetrano, Muhammad Ali, Pierpaolo Purpura, Cesare Gagliardo, Paola Feraco, Costanza Longo, Tommaso Vincenzo Bartolotta, Patrizia Toia, Oriana Calisto, Albert Comelli, Massimo Midiri and Pierpaolo Alongi
Life 2025, 15(4), 617; https://doi.org/10.3390/life15040617 - 7 Apr 2025
Cited by 2 | Viewed by 1249
Abstract
Meningiomas arise from the meningeal layers covering the central nervous system structures. Although most are benign, meningiomas can still cause neurological morbidity due to the mass effect and compression of the surrounding parenchyma. The prognosis also depends on several factors such as growth [...] Read more.
Meningiomas arise from the meningeal layers covering the central nervous system structures. Although most are benign, meningiomas can still cause neurological morbidity due to the mass effect and compression of the surrounding parenchyma. The prognosis also depends on several factors such as growth pattern or location. Morphological imaging approaches, such as MRI and CT, that emphasize intracranial calcifications, vascular patterns, or invasion of major vessels act as the basis of the diagnosis; PET/CT imaging is a valuable diagnostic tool for assessing somatostatin receptor activity in tumors. It enables the visualization and quantification of somatostatin receptor expression, providing insights into tumor biology, receptor status, and potential therapeutic targets. Aside from radiosurgery and neurosurgical intervention, peptide receptor radionuclide therapy (PRRT) has also shown promising results. Somatostatin receptors 1 and 2 are nearly universally expressed in meningioma tissue. This characteristic is increasingly exploited to identify patients eligible for adjuvant therapy using DOTA-conjugated somatostatin receptor-targeting peptides PET. In the treatment of relapsed/refractory meningiomas, PRRT is increasingly considered a safe and effective therapeutic option. It is often supported by artificial intelligence strategies for dose optimization and side-effect monitoring. The objective of this study is to evaluate the safety and benefits of these strategies based on the latest findings. Full article
(This article belongs to the Special Issue Advances and Applications of Neuroimaging in Brain Disorder)
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20 pages, 3843 KiB  
Review
Revolutionizing Periodontal Care: The Role of Artificial Intelligence in Diagnosis, Treatment, and Prognosis
by Giacomo Spartivento, Viviana Benfante, Muhammad Ali, Anthony Yezzi, Domenico Di Raimondo, Antonino Tuttolomondo, Antonio Lo Casto and Albert Comelli
Appl. Sci. 2025, 15(6), 3295; https://doi.org/10.3390/app15063295 - 18 Mar 2025
Viewed by 2077
Abstract
This review evaluates the application of artificial intelligence (AI), particularly neural networks, in diagnosing and staging periodontal diseases through radiographic analysis. Using a systematic review of 22 studies published between 2017 and 2024, it examines various AI models, including convolutional neural networks (CNNs), [...] Read more.
This review evaluates the application of artificial intelligence (AI), particularly neural networks, in diagnosing and staging periodontal diseases through radiographic analysis. Using a systematic review of 22 studies published between 2017 and 2024, it examines various AI models, including convolutional neural networks (CNNs), hybrid networks, generative adversarial networks (GANs), and transformer networks. The studies analyzed diverse datasets from panoramic, periapical, and hybrid imaging techniques, assessing diagnostic accuracy, sensitivity, specificity, and interpretability. CNN models like Deetal-Perio and YOLOv5 achieved high accuracy in detecting alveolar bone loss (ABL), with F1 scores up to 0.894. Hybrid networks demonstrate strength in handling complex cases, such as molars and vertical bone loss. Despite these advancements, challenges persist, including reduced performance in severe cases, limited datasets for vertical bone loss, and the need for 3D imaging integration. AI-driven tools offer transformative potential in periodontology by rivaling clinician performance, improving diagnostic consistency, and streamlining workflows. Addressing current limitations with large, diverse datasets and advanced imaging techniques will further optimize their clinical utility. AI stands poised to revolutionize periodontal care, enabling early diagnosis, personalized treatment planning, and better patient outcomes. Full article
(This article belongs to the Special Issue Deep Learning in Medical Image Processing and Analysis)
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42 pages, 20752 KiB  
Review
Applications of Artificial Intelligence, Deep Learning, and Machine Learning to Support the Analysis of Microscopic Images of Cells and Tissues
by Muhammad Ali, Viviana Benfante, Ghazal Basirinia, Pierpaolo Alongi, Alessandro Sperandeo, Alberto Quattrocchi, Antonino Giulio Giannone, Daniela Cabibi, Anthony Yezzi, Domenico Di Raimondo, Antonino Tuttolomondo and Albert Comelli
J. Imaging 2025, 11(2), 59; https://doi.org/10.3390/jimaging11020059 - 15 Feb 2025
Cited by 10 | Viewed by 5180
Abstract
Artificial intelligence (AI) transforms image data analysis across many biomedical fields, such as cell biology, radiology, pathology, cancer biology, and immunology, with object detection, image feature extraction, classification, and segmentation applications. Advancements in deep learning (DL) research have been a critical factor in [...] Read more.
Artificial intelligence (AI) transforms image data analysis across many biomedical fields, such as cell biology, radiology, pathology, cancer biology, and immunology, with object detection, image feature extraction, classification, and segmentation applications. Advancements in deep learning (DL) research have been a critical factor in advancing computer techniques for biomedical image analysis and data mining. A significant improvement in the accuracy of cell detection and segmentation algorithms has been achieved as a result of the emergence of open-source software and innovative deep neural network architectures. Automated cell segmentation now enables the extraction of quantifiable cellular and spatial features from microscope images of cells and tissues, providing critical insights into cellular organization in various diseases. This review aims to examine the latest AI and DL techniques for cell analysis and data mining in microscopy images, aid the biologists who have less background knowledge in AI and machine learning (ML), and incorporate the ML models into microscopy focus images. Full article
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23 pages, 898 KiB  
Systematic Review
Artificial Intelligence and Statistical Models for the Prediction of Radiotherapy Toxicity in Prostate Cancer: A Systematic Review
by Antonio Piras, Rosario Corso, Viviana Benfante, Muhammad Ali, Riccardo Laudicella, Pierpaolo Alongi, Andrea D'Aviero, Davide Cusumano, Luca Boldrini, Giuseppe Salvaggio, Domenico Di Raimondo, Antonino Tuttolomondo and Albert Comelli
Appl. Sci. 2024, 14(23), 10947; https://doi.org/10.3390/app142310947 - 25 Nov 2024
Cited by 5 | Viewed by 2350
Abstract
Background: Prostate cancer (PCa) is the second most common cancer in men, and radiotherapy (RT) is one of the main treatment options. Although effective, RT can cause toxic side effects. The accurate prediction of dosimetric parameters, enhanced by advanced technologies and AI-based predictive [...] Read more.
Background: Prostate cancer (PCa) is the second most common cancer in men, and radiotherapy (RT) is one of the main treatment options. Although effective, RT can cause toxic side effects. The accurate prediction of dosimetric parameters, enhanced by advanced technologies and AI-based predictive models, is crucial to optimize treatments and reduce toxicity risks. This study aims to explore current methodologies for predictive dosimetric parameters associated with RT toxicity in PCa patients, analyzing both traditional techniques and recent innovations. Methods: A systematic review was conducted using the PubMed, Scopus, and Medline databases to identify dosimetric predictive parameters for RT in prostate cancer. Studies published from 1987 to April 2024 were included, focusing on predictive models, dosimetric data, and AI techniques. Data extraction covered study details, methodology, predictive models, and results, with an emphasis on identifying trends and gaps in the research. Results: After removing duplicate manuscripts, 354 articles were identified from three databases, with 49 shortlisted for in-depth analysis. Of these, 27 met the inclusion criteria. Most studies utilized logistic regression models to analyze correlations between dosimetric parameters and toxicity, with the accuracy assessed by the area under the curve (AUC). The dosimetric parameter studies included Vdose, Dmax, and Dmean for the rectum, anal canal, bowel, and bladder. The evaluated toxicities were genitourinary, hematological, and gastrointestinal. Conclusions: Understanding dosimetric parameters, such as DVH, Dmax, and Dmean, is crucial for optimizing RT and predicting toxicity. Enhanced predictive accuracy improves treatment effectiveness and reduces side effects, ultimately improving patients’ quality of life. Emerging artificial intelligence and machine learning technologies offer the potential to further refine RT in PCa by analyzing complex data, and enabling more personalized treatment approaches. Full article
(This article belongs to the Special Issue Advances and Applications of Medical Imaging Physics)
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22 pages, 3445 KiB  
Review
Theranostic Approaches for Gastric Cancer: An Overview of In Vitro and In Vivo Investigations
by Ghazal Basirinia, Muhammad Ali, Albert Comelli, Alessandro Sperandeo, Sebastiano Piana, Pierpaolo Alongi, Costanza Longo, Domenico Di Raimondo, Antonino Tuttolomondo and Viviana Benfante
Cancers 2024, 16(19), 3323; https://doi.org/10.3390/cancers16193323 - 28 Sep 2024
Cited by 14 | Viewed by 2761
Abstract
Gastric cancer (GC) is the second most common cause of cancer-related death worldwide and a serious public health concern. This high death rate is mostly caused by late-stage diagnoses, which lead to poor treatment outcomes. Radiation immunotherapy and targeted therapies are becoming increasingly [...] Read more.
Gastric cancer (GC) is the second most common cause of cancer-related death worldwide and a serious public health concern. This high death rate is mostly caused by late-stage diagnoses, which lead to poor treatment outcomes. Radiation immunotherapy and targeted therapies are becoming increasingly popular in GC treatment, in addition to surgery and systemic chemotherapy. In this review, we have focused on both in vitro and in vivo research, which presents a summary of recent developments in targeted therapies for gastric cancer. We explore targeted therapy approaches, including integrin receptors, HER2, Claudin 18, and glutathione-responsive systems. For instance, therapies targeting the integrin receptors such as the αvβ3 and αvβ5 integrins have shown promise in enhancing diagnostic precision and treatment efficacy. Furthermore, nanotechnology provides novel approaches to targeted drug delivery and imaging. These include glutathione-responsive nanoplatforms and cyclic RGD peptide-conjugated nanoparticles. These novel strategies seek to reduce systemic toxicity while increasing specificity and efficacy. To sum up, the review addresses the significance of personalized medicine and advancements in gastric cancer-targeted therapies. It explores potential methods for enhancing gastric cancer prognosis and treatment in the future. Full article
(This article belongs to the Special Issue Targeted Therapy in Gastrointestinal Cancer)
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21 pages, 2209 KiB  
Article
New Parametric 2D Curves for Modeling Prostate Shape in Magnetic Resonance Images
by Rosario Corso, Albert Comelli, Giuseppe Salvaggio and Domenico Tegolo
Symmetry 2024, 16(6), 755; https://doi.org/10.3390/sym16060755 - 17 Jun 2024
Cited by 4 | Viewed by 2527
Abstract
Geometric shape models often help to extract specific contours in digital images (the segmentation process) with major precision. Motivated by this idea, we introduce two models for the representation of prostate shape in the axial plane of magnetic resonance images. In more detail, [...] Read more.
Geometric shape models often help to extract specific contours in digital images (the segmentation process) with major precision. Motivated by this idea, we introduce two models for the representation of prostate shape in the axial plane of magnetic resonance images. In more detail, the models are two parametric closed curves of the plane. The analytic study of the models includes the geometric role of the parameters describing the curves, symmetries, invariants, special cases, elliptic Fourier descriptors, conditions for simple curves and area of the enclosed surfaces. The models were validated for prostate shapes by fitting the curves to prostate contours delineated by a radiologist and measuring the errors with the mean distance, the Hausdorff distance and the Dice similarity coefficient. Validation was also conducted by comparing our models with the deformed superellipse model used in literature. Our models are equivalent in fitting metrics to the deformed superellipse model; however, they have the advantage of a more straightforward formulation and they depend on fewer parameters, implying a reduced computational time for the fitting process. Due to the validation, our models may be applied for developing innovative and performing segmentation methods or improving existing ones. Full article
(This article belongs to the Special Issue Feature Papers in Mathematics Section)
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26 pages, 10313 KiB  
Review
A Review of Advances in Molecular Imaging of Rheumatoid Arthritis: From In Vitro to Clinic Applications Using Radiolabeled Targeting Vectors with Technetium-99m
by Muhammad Ali, Viviana Benfante, Domenico Di Raimondo, Riccardo Laudicella, Antonino Tuttolomondo and Albert Comelli
Life 2024, 14(6), 751; https://doi.org/10.3390/life14060751 - 12 Jun 2024
Cited by 5 | Viewed by 4259
Abstract
Rheumatoid arthritis (RA) is a systemic autoimmune disorder caused by inflammation of cartilaginous diarthrodial joints that destroys joints and cartilage, resulting in synovitis and pannus formation. Timely detection and effective management of RA are pivotal for mitigating inflammatory arthritis consequences, potentially influencing disease [...] Read more.
Rheumatoid arthritis (RA) is a systemic autoimmune disorder caused by inflammation of cartilaginous diarthrodial joints that destroys joints and cartilage, resulting in synovitis and pannus formation. Timely detection and effective management of RA are pivotal for mitigating inflammatory arthritis consequences, potentially influencing disease progression. Nuclear medicine using radiolabeled targeted vectors presents a promising avenue for RA diagnosis and response to treatment assessment. Radiopharmaceutical such as technetium-99m (99mTc), combined with single photon emission computed tomography (SPECT) combined with CT (SPECT/CT), introduces a more refined diagnostic approach, enhancing accuracy through precise anatomical localization, representing a notable advancement in hybrid molecular imaging for RA evaluation. This comprehensive review discusses existing research, encompassing in vitro, in vivo, and clinical studies to explore the application of 99mTc radiolabeled targeting vectors with SPECT imaging for RA diagnosis. The purpose of this review is to highlight the potential of this strategy to enhance patient outcomes by improving the early detection and management of RA. Full article
(This article belongs to the Section Radiobiology and Nuclear Medicine)
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12 pages, 2112 KiB  
Article
Radiomics Analysis of Preprocedural CT Imaging for Outcome Prediction after Transjugular Intrahepatic Portosystemic Shunt Creation
by Giuseppe Mamone, Albert Comelli, Giorgia Porrello, Mariapina Milazzo, Ambra Di Piazza, Alessandro Stefano, Viviana Benfante, Antonino Tuttolomondo, Gianvincenzo Sparacia, Luigi Maruzzelli and Roberto Miraglia
Life 2024, 14(6), 726; https://doi.org/10.3390/life14060726 - 3 Jun 2024
Cited by 1 | Viewed by 1275
Abstract
Purpose: To evaluate the role of radiomics in preoperative outcome prediction in cirrhotic patients who underwent transjugular intrahepatic portosystemic shunt (TIPS) using “controlled expansion covered stents”. Materials and Methods: This retrospective institutional review board-approved study included cirrhotic patients undergoing TIPS with controlled expansion [...] Read more.
Purpose: To evaluate the role of radiomics in preoperative outcome prediction in cirrhotic patients who underwent transjugular intrahepatic portosystemic shunt (TIPS) using “controlled expansion covered stents”. Materials and Methods: This retrospective institutional review board-approved study included cirrhotic patients undergoing TIPS with controlled expansion covered stent placement. From preoperative CT images, the whole liver was segmented into Volumes of Interest (VOIs) at the unenhanced and portal venous phase. Radiomics features were extracted, collected, and analyzed. Subsequently, receiver operating characteristic (ROC) curves were drawn to assess which features could predict patients’ outcomes. The endpoints studied were 6-month overall survival (OS), development of hepatic encephalopathy (HE), grade II or higher HE according to West Haven Criteria, and clinical response, defined as the absence of rebleeding or ascites. A radiomic model for outcome prediction was then designed. Results: A total of 76 consecutive cirrhotic patients undergoing TIPS creation were enrolled. The highest performances in terms of the area under the receiver operating characteristic curve (AUROC) were observed for the “clinical response” and “survival at 6 months” outcome with 0.755 and 0.767, at the unenhanced and portal venous phase, respectively. Specifically, on basal scans, accuracy, specificity, and sensitivity were 66.42%, 63.93%, and 73.75%, respectively. At the portal venous phase, an accuracy of 65.34%, a specificity of 62.38%, and a sensitivity of 74.00% were demonstrated. Conclusions: A pre-interventional machine learning-based CT radiomics algorithm could be useful in predicting survival and clinical response after TIPS creation in cirrhotic patients. Full article
(This article belongs to the Special Issue Application Research of Bioinformatics in Human Diseases)
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15 pages, 4429 KiB  
Article
High-Risk HPV CISH Detection in Cervical Biopsies with Weak and/or Focal p16 Immunohistochemical Positivity
by Daniela Cabibi, Antonino Giulio Giannone, Alberto Quattrocchi, Roberta Lo Coco, Eleonora Formisano, Rossana Porcasi, Viviana Benfante, Albert Comelli and Giuseppina Capra
Int. J. Mol. Sci. 2024, 25(10), 5354; https://doi.org/10.3390/ijms25105354 - 14 May 2024
Cited by 1 | Viewed by 4806
Abstract
In cervical biopsies, for diagnosis of Human Papilloma Virus (HPV) related conditions, the immunohistochemical staining for p16 has a diagnostic value only if diffusely and strongly positive, pattern named “block-like”. “Weak and/or focal (w/f) p16 expression” is commonly considered nonspecific. In our previous [...] Read more.
In cervical biopsies, for diagnosis of Human Papilloma Virus (HPV) related conditions, the immunohistochemical staining for p16 has a diagnostic value only if diffusely and strongly positive, pattern named “block-like”. “Weak and/or focal (w/f) p16 expression” is commonly considered nonspecific. In our previous study, we demonstrated the presence of high-risk HPV (hrHPV) DNA by LiPa method in biopsies showing w/f p16 positivity. The aim of the present study was to investigate the presence of hrHPV-DNA by CISH in the areas showing w/f p16 expression. We assessed the presence of hrHPV16, 18, 31, 33, 51 by CISH in a group of 20 cervical biopsies showing w/f p16 expression, some with increased Ki67, and in 10 cases of block-like expression, employed as control. The immunohistochemical p16 expression was also assessed by digital pathology. hrHPV-CISH nuclear positivity was encountered in 12/20 cases of w/f p16 expression (60%). Different patterns of nuclear positivity were identified, classified as punctate, diffuse and mixed, with different epithelial distributions. Our results, albeit in a limited casuistry, show the presence of HPV in an integrated status highlighted by CISH in w/f p16 positive cases. This could suggest the necessity of a careful follow-up of the patients with “weak” and/or “focal” immunohistochemical patterns of p16, mainly in cases of increased Ki67 cell proliferation index, supplemented with molecular biology examinations. Full article
(This article belongs to the Special Issue Molecular Studies on HPV and Cancer)
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19 pages, 2006 KiB  
Article
Shearlet Transform Applied to a Prostate Cancer Radiomics Analysis on MR Images
by Rosario Corso, Alessandro Stefano, Giuseppe Salvaggio and Albert Comelli
Mathematics 2024, 12(9), 1296; https://doi.org/10.3390/math12091296 - 25 Apr 2024
Cited by 11 | Viewed by 1630
Abstract
For decades, wavelet theory has attracted interest in several fields in dealing with signals. Nowadays, it is acknowledged that it is not very suitable to face aspects of multidimensional data like singularities and this has led to the development of other mathematical tools. [...] Read more.
For decades, wavelet theory has attracted interest in several fields in dealing with signals. Nowadays, it is acknowledged that it is not very suitable to face aspects of multidimensional data like singularities and this has led to the development of other mathematical tools. A recent application of wavelet theory is in radiomics, an emerging field aiming to improve diagnostic, prognostic and predictive analysis of various cancer types through the analysis of features extracted from medical images. In this paper, for a radiomics study of prostate cancer with magnetic resonance (MR) images, we apply a similar but more sophisticated tool, namely the shearlet transform which, in contrast to the wavelet transform, allows us to examine variations along more orientations. In particular, we conduct a parallel radiomics analysis based on the two different transformations and highlight a better performance (evaluated in terms of statistical measures) in the use of the shearlet transform (in absolute value). The results achieved suggest taking the shearlet transform into consideration for radiomics studies in other contexts. Full article
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16 pages, 3288 KiB  
Article
Biodistribution Assessment of a Novel 68Ga-Labeled Radiopharmaceutical in a Cancer Overexpressing CCK2R Mouse Model: Conventional and Radiomics Methods for Analysis
by Anna Maria Pavone, Viviana Benfante, Paolo Giaccone, Alessandro Stefano, Filippo Torrisi, Vincenzo Russo, Davide Serafini, Selene Richiusa, Marco Pometti, Fabrizio Scopelliti, Massimo Ippolito, Antonino Giulio Giannone, Daniela Cabibi, Mattia Asti, Elisa Vettorato, Luca Morselli, Mario Merone, Marcello Lunardon, Alberto Andrighetto, Antonino Tuttolomondo, Francesco Paolo Cammarata, Marco Verona, Giovanni Marzaro, Francesca Mastrotto, Rosalba Parenti, Giorgio Russo and Albert Comelliadd Show full author list remove Hide full author list
Life 2024, 14(3), 409; https://doi.org/10.3390/life14030409 - 20 Mar 2024
Cited by 4 | Viewed by 2697
Abstract
The aim of the present study consists of the evaluation of the biodistribution of a novel 68Ga-labeled radiopharmaceutical, [68Ga]Ga-NODAGA-Z360, injected into Balb/c nude mice through histopathological analysis on bioptic samples and radiomics analysis of positron emission tomography/computed tomography (PET/CT) images. [...] Read more.
The aim of the present study consists of the evaluation of the biodistribution of a novel 68Ga-labeled radiopharmaceutical, [68Ga]Ga-NODAGA-Z360, injected into Balb/c nude mice through histopathological analysis on bioptic samples and radiomics analysis of positron emission tomography/computed tomography (PET/CT) images. The 68Ga-labeled radiopharmaceutical was designed to specifically bind to the cholecystokinin receptor (CCK2R). This receptor, naturally present in healthy tissues such as the stomach, is a biomarker for numerous tumors when overexpressed. In this experiment, Balb/c nude mice were xenografted with a human epidermoid carcinoma A431 cell line (A431 WT) and overexpressing CCK2R (A431 CCK2R+), while controls received a wild-type cell line. PET images were processed, segmented after atlas-based co-registration and, consequently, 112 radiomics features were extracted for each investigated organ / tissue. To confirm the histopathology at the tissue level and correlate it with the degree of PET uptake, the studies were supported by digital pathology. As a result of the analyses, the differences in radiomics features in different body districts confirmed the correct targeting of the radiopharmaceutical. In preclinical imaging, the methodology confirms the importance of a decision-support system based on artificial intelligence algorithms for the assessment of radiopharmaceutical biodistribution. Full article
(This article belongs to the Section Radiobiology and Nuclear Medicine)
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12 pages, 1412 KiB  
Article
Quantitative Evaluation by Digital Pathology of Immunohistochemical Expression of CK7, CK19, and EpCAM in Advanced Stages of NASH
by Daniela Cabibi, Antonino Giulio Giannone, Alberto Quattrocchi, Vincenza Calvaruso, Rossana Porcasi, Domenico Di Grusa, Anna Maria Pavone, Albert Comelli and Salvatore Petta
Biomedicines 2024, 12(2), 440; https://doi.org/10.3390/biomedicines12020440 - 16 Feb 2024
Cited by 1 | Viewed by 1868
Abstract
(1) Background: Nonalcoholic Steatohepatitis/Nonalcoholic Fatty Liver Disease (NASH/NAFLD) is the most recurrent chronic liver disease. NASH could present with a cholestatic (C) or hepatic (H) pattern of damage. Recently, we observed that increased Epithelial Cell Adhesion Molecule (EpCAM) expression was the main immunohistochemical [...] Read more.
(1) Background: Nonalcoholic Steatohepatitis/Nonalcoholic Fatty Liver Disease (NASH/NAFLD) is the most recurrent chronic liver disease. NASH could present with a cholestatic (C) or hepatic (H) pattern of damage. Recently, we observed that increased Epithelial Cell Adhesion Molecule (EpCAM) expression was the main immunohistochemical feature to distinguish C from H pattern in NASH. (2) Methods: In the present study, we used digital pathology to compare the quantitative results of digital image analysis by QuPath software (Q-results), with the semi-quantitative results of observer assessment (S-results) for cytokeratin 7 and 19, (CK7, CK19) as well as EpCAM expression. Patients were classified into H or C group on the basis of the ratio between alanine transaminase (ALT) and alkaline phosphatase (ALP) values, using the “R-ratio formula”. (3) Results: Q- and S-results showed a significant correlation for all markers (p < 0.05). Q-EpCAM expression was significantly higher in the C group than in the H group (p < 0.05). Importantly ALP, an indicator of hepatobiliary disorder, was the only biochemical parameter significantly correlated with Q-EpCAM. Instead, Q-CK7, but not Q-CK19, correlated only with γGlutamyl-Transferase (γGT). Of note, Stage 4 fibrosis correlated with Q-EpCAM, Q-CK19, and ALP but not with γGT or ALT. Conclusions: Image analysis confirms the relation between cholestatic-like pattern, associated with a worse prognosis, with increased ALP values, EpCAM positive biliary metaplasia, and advanced fibrosis. These preliminary data could be useful for the implementation of AI algorithms for the assessment of cholestatic NASH. Full article
(This article belongs to the Section Cell Biology and Pathology)
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38 pages, 8279 KiB  
Review
Recent Developments in Nanoparticle Formulations for Resveratrol Encapsulation as an Anticancer Agent
by Muhammad Ali, Viviana Benfante, Domenico Di Raimondo, Giuseppe Salvaggio, Antonino Tuttolomondo and Albert Comelli
Pharmaceuticals 2024, 17(1), 126; https://doi.org/10.3390/ph17010126 - 18 Jan 2024
Cited by 27 | Viewed by 7684
Abstract
Resveratrol is a polyphenolic compound that has gained considerable attention in the past decade due to its multifaceted therapeutic potential, including anti-inflammatory and anticancer properties. However, its anticancer efficacy is impeded by low water solubility, dose-limiting toxicity, low bioavailability, and rapid hepatic metabolism. [...] Read more.
Resveratrol is a polyphenolic compound that has gained considerable attention in the past decade due to its multifaceted therapeutic potential, including anti-inflammatory and anticancer properties. However, its anticancer efficacy is impeded by low water solubility, dose-limiting toxicity, low bioavailability, and rapid hepatic metabolism. To overcome these hurdles, various nanoparticles such as organic and inorganic nanoparticles, liposomes, polymeric nanoparticles, dendrimers, solid lipid nanoparticles, gold nanoparticles, zinc oxide nanoparticles, zeolitic imidazolate frameworks, carbon nanotubes, bioactive glass nanoparticles, and mesoporous nanoparticles were employed to deliver resveratrol, enhancing its water solubility, bioavailability, and efficacy against various types of cancer. Resveratrol-loaded nanoparticle or resveratrol-conjugated nanoparticle administration exhibits excellent anticancer potency compared to free resveratrol. This review highlights the latest developments in nanoparticle-based delivery systems for resveratrol, focusing on the potential to overcome limitations associated with the compound’s bioavailability and therapeutic effectiveness. Full article
(This article belongs to the Section Natural Products)
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24 pages, 1137 KiB  
Review
Digital Pathology: A Comprehensive Review of Open-Source Histological Segmentation Software
by Anna Maria Pavone, Antonino Giulio Giannone, Daniela Cabibi, Simona D’Aprile, Simona Denaro, Giuseppe Salvaggio, Rosalba Parenti, Anthony Yezzi and Albert Comelli
BioMedInformatics 2024, 4(1), 173-196; https://doi.org/10.3390/biomedinformatics4010012 - 11 Jan 2024
Cited by 5 | Viewed by 6753
Abstract
In the era of digitalization, the biomedical sector has been affected by the spread of artificial intelligence. In recent years, the possibility of using deep and machine learning methods for clinical diagnostic and therapeutic interventions has been emerging as an essential resource for [...] Read more.
In the era of digitalization, the biomedical sector has been affected by the spread of artificial intelligence. In recent years, the possibility of using deep and machine learning methods for clinical diagnostic and therapeutic interventions has been emerging as an essential resource for biomedical imaging. Digital pathology represents innovation in a clinical world that looks for faster and better-performing diagnostic methods, without losing the accuracy of current human-guided analyses. Indeed, artificial intelligence has played a key role in a wide variety of applications that require the analysis of a massive amount of data, including segmentation processes in medical imaging. In this context, artificial intelligence enables the improvement of image segmentation methods, moving towards the development of fully automated systems of analysis able to support pathologists in decision-making procedures. The aim of this review is to aid biologists and clinicians in discovering the most common segmentation open-source tools, including ImageJ (v. 1.54), CellProfiler (v. 4.2.5), Ilastik (v. 1.3.3) and QuPath (v. 0.4.3), along with their customized implementations. Additionally, the tools’ role in the histological imaging field is explored further, suggesting potential application workflows. In conclusion, this review encompasses an examination of the most commonly segmented tissues and their analysis through open-source deep and machine learning tools. Full article
(This article belongs to the Special Issue Feature Papers in Applied Biomedical Data Science)
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18 pages, 2034 KiB  
Article
A Critical Analysis of the Robustness of Radiomics to Variations in Segmentation Methods in 18F-PSMA-1007 PET Images of Patients Affected by Prostate Cancer
by Giovanni Pasini, Giorgio Russo, Cristina Mantarro, Fabiano Bini, Selene Richiusa, Lucrezia Morgante, Albert Comelli, Giorgio Ivan Russo, Maria Gabriella Sabini, Sebastiano Cosentino, Franco Marinozzi, Massimo Ippolito and Alessandro Stefano
Diagnostics 2023, 13(24), 3640; https://doi.org/10.3390/diagnostics13243640 - 11 Dec 2023
Cited by 11 | Viewed by 2376
Abstract
Background: Radiomics shows promising results in supporting the clinical decision process, and much effort has been put into its standardization, thus leading to the Imaging Biomarker Standardization Initiative (IBSI), that established how radiomics features should be computed. However, radiomics still lacks standardization and [...] Read more.
Background: Radiomics shows promising results in supporting the clinical decision process, and much effort has been put into its standardization, thus leading to the Imaging Biomarker Standardization Initiative (IBSI), that established how radiomics features should be computed. However, radiomics still lacks standardization and many factors, such as segmentation methods, limit study reproducibility and robustness. Aim: We investigated the impact that three different segmentation methods (manual, thresholding and region growing) have on radiomics features extracted from 18F-PSMA-1007 Positron Emission Tomography (PET) images of 78 patients (43 Low Risk, 35 High Risk). Segmentation was repeated for each patient, thus leading to three datasets of segmentations. Then, feature extraction was performed for each dataset, and 1781 features (107 original, 930 Laplacian of Gaussian (LoG) features, 744 wavelet features) were extracted. Feature robustness and reproducibility were assessed through the intra class correlation coefficient (ICC) to measure agreement between the three segmentation methods. To assess the impact that the three methods had on machine learning models, feature selection was performed through a hybrid descriptive-inferential method, and selected features were given as input to three classifiers, K-Nearest Neighbors (KNN), Support Vector Machines (SVM), Linear Discriminant Analysis (LDA), Random Forest (RF), AdaBoost and Neural Networks (NN), whose performance in discriminating between low-risk and high-risk patients have been validated through 30 times repeated five-fold cross validation. Conclusions: Our study showed that segmentation methods influence radiomics features and that Shape features were the least reproducible (average ICC: 0.27), while GLCM features the most reproducible. Moreover, feature reproducibility changed depending on segmentation type, resulting in 51.18% of LoG features exhibiting excellent reproducibility (range average ICC: 0.68–0.87) and 47.85% of wavelet features exhibiting poor reproducibility that varied between wavelet sub-bands (range average ICC: 0.34–0.80) and resulted in the LLL band showing the highest average ICC (0.80). Finally, model performance showed that region growing led to the highest accuracy (74.49%), improved sensitivity (84.38%) and AUC (79.20%) in contrast with manual segmentation. Full article
(This article belongs to the Section Medical Imaging and Theranostics)
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