Epigenetic Regulation of cccDNA Functions and HBV Replication

A special issue of Viruses (ISSN 1999-4915). This special issue belongs to the section "Animal Viruses".

Deadline for manuscript submissions: closed (31 March 2023) | Viewed by 22389

Special Issue Editors


E-Mail Website
Guest Editor
INSERM U1052, CNRS UMR-5286, Cancer Research Center of Lyon (CRCL), 69008 Lyon, France
Interests: chromatin; transcription and co-transcriptional events regulation; hepatitis B virus
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Cancer Research Center of Lyon (CRCL), Inserm UMR1052 - CNRS 5286; Lyon, France; Université Claude Bernard Lyon 1 - Hospices Civils de Lyon; Lyon, France
Interests: hepatitis B virus (HBV); epigenetics; hepatocellular carcinoma (HCC)

Special Issue Information

Dear Colleagues,

Despite the existence of a prophylactic vaccine, chronic hepatitis B virus (HBV) infection remains a global health problem, with 257 million people living with HBV and at risk of developing severe liver diseases. The suppression of HBV replication by current standard-of-care antiviral therapies (nucleos(t)ide analogs, NUCs) has a positive impact on disease progression, but does not eliminate hepatocellular carcinoma risk in patients with advanced fibrosis and established cirrhosis. NUCs do not target the HBV covalently closed circular DNA (cccDNA) nuclear replicative intermediate, responsible for viral persistence in infected hepatocytes. cccDNA acts as the unique template for pregenomic RNA (pgRNA) transcription, which is reverse transcribed to sustain viral genome replication. cccDNA is assembled into a stable, episomal, chromatinized structure in hepatocyte nuclei, where its activity is subjected to the epigenetic regulation by viral and host factors. cccDNA elimination is universally recognized as the ultimate goal for new emerging antiviral strategies.

In this Special Issue of Viruses, we explore the scientific gaps in knowledge and the technical challenges related to cccDNA detection, persistence, regulation, and therapeutic targeting.

The Special Issue will combine invited and proffered contributions on the following topics :

  • cccDNA biogenesis;
  • cccDNA chromatin structure;
  • cccDNA transcriptional and co-transcriptional regulation;
  • Strategies to target cccDNA for cure;
  • Techniques to detect and quantify cccDNA in cells, animal models, and patients samples;
  • Techniques to assess cccDNA chromatin status and activity in cells, animal models, and patient samples.

We strongly believe that uniting research and review papers on these topics will be of great interest for the wider scientific community involved in the effort of identifying new antiviral strategies capable of targeting and eliminating cccDNA from the nucleus of infected hepatocytes—the major challenge for the cure of chronic HBV infection.

 

Dr. Barbara Testoni
Prof. Dr. Massimo Levrero
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Viruses is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2600 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • hepatitis B virus
  • cccDNA
  • chromatin
  • transcription
  • epigenetics
  • RNA regulation

Benefits of Publishing in a Special Issue

  • Ease of navigation: Grouping papers by topic helps scholars navigate broad scope journals more efficiently.
  • Greater discoverability: Special Issues support the reach and impact of scientific research. Articles in Special Issues are more discoverable and cited more frequently.
  • Expansion of research network: Special Issues facilitate connections among authors, fostering scientific collaborations.
  • External promotion: Articles in Special Issues are often promoted through the journal's social media, increasing their visibility.
  • e-Book format: Special Issues with more than 10 articles can be published as dedicated e-books, ensuring wide and rapid dissemination.

Further information on MDPI's Special Issue polices can be found here.

Published Papers (4 papers)

Order results
Result details
Select all
Export citation of selected articles as:

Review

22 pages, 1183 KiB  
Review
Gene Editing Technologies to Target HBV cccDNA
by Maria Guadalupe Martinez, Elena Smekalova, Emmanuel Combe, Francine Gregoire, Fabien Zoulim and Barbara Testoni
Viruses 2022, 14(12), 2654; https://doi.org/10.3390/v14122654 - 28 Nov 2022
Cited by 14 | Viewed by 3727
Abstract
Hepatitis B virus (HBV) remains a significant cause of mortality and morbidity worldwide, since chronic HBV infection is associated with elevated risk of cirrhosis and hepatocellular carcinoma. Current licensed therapies against HBV efficiently suppress viral replication; however, they do not have significant effects [...] Read more.
Hepatitis B virus (HBV) remains a significant cause of mortality and morbidity worldwide, since chronic HBV infection is associated with elevated risk of cirrhosis and hepatocellular carcinoma. Current licensed therapies against HBV efficiently suppress viral replication; however, they do not have significant effects on the intrahepatic covalently closed circular DNA (cccDNA) of the viral minichromosome responsible for viral persistence. Thus, life-long treatment is required to avoid viral rebound. There is a significant need for novel therapies that can reduce, silence or eradicate cccDNA, thus preventing HBV reemergence after treatment withdrawal. In this review, we discuss the latest developments and applications of gene editing and related approaches for directly targeting HBV DNA and, more specifically, cccDNA in infected hepatocytes. Full article
(This article belongs to the Special Issue Epigenetic Regulation of cccDNA Functions and HBV Replication)
Show Figures

Figure 1

26 pages, 3317 KiB  
Review
Imaging of Hepatitis B Virus Nucleic Acids: Current Advances and Challenges
by Luisa F. Bustamante-Jaramillo, Joshua Fingal, Marie-Lise Blondot, Gustaf E. Rydell and Michael Kann
Viruses 2022, 14(3), 557; https://doi.org/10.3390/v14030557 - 8 Mar 2022
Cited by 6 | Viewed by 4081
Abstract
Hepatitis B virus infections are the main reason for hepatocellular carcinoma development. Current treatment reduces the viral load but rarely leads to virus elimination. Despite its medical importance, little is known about infection dynamics on the cellular level not at least due to [...] Read more.
Hepatitis B virus infections are the main reason for hepatocellular carcinoma development. Current treatment reduces the viral load but rarely leads to virus elimination. Despite its medical importance, little is known about infection dynamics on the cellular level not at least due to technical obstacles. Regardless of infections leading to extreme viral loads, which may reach 1010 virions per mL serum, hepatitis B viruses are of low abundance and productivity in individual cells. Imaging of the infections in cells is thus a particular challenge especially for cccDNA that exists only in a few copies. The review describes the significance of microscopical approaches on genome and transcript detection for understanding hepatitis B virus infections, implications for understanding treatment outcomes, and recent microscopical approaches, which have not been applied in HBV research. Full article
(This article belongs to the Special Issue Epigenetic Regulation of cccDNA Functions and HBV Replication)
Show Figures

Figure 1

15 pages, 1412 KiB  
Review
Crosstalk between Hepatitis B Virus and the 3D Genome Structure
by João Diogo Dias, Nazim Sarica, Axel Cournac, Romain Koszul and Christine Neuveut
Viruses 2022, 14(2), 445; https://doi.org/10.3390/v14020445 - 21 Feb 2022
Cited by 6 | Viewed by 3222
Abstract
Viruses that transcribe their DNA within the nucleus have to adapt to the existing cellular mechanisms that govern transcriptional regulation. Recent technological breakthroughs have highlighted the highly hierarchical organization of the cellular genome and its role in the regulation of gene expression. This [...] Read more.
Viruses that transcribe their DNA within the nucleus have to adapt to the existing cellular mechanisms that govern transcriptional regulation. Recent technological breakthroughs have highlighted the highly hierarchical organization of the cellular genome and its role in the regulation of gene expression. This review provides an updated overview on the current knowledge on how the hepatitis B virus interacts with the cellular 3D genome and its consequences on viral and cellular gene expression. We also briefly discuss the strategies developed by other DNA viruses to co-opt and sometimes subvert cellular genome spatial organization. Full article
(This article belongs to the Special Issue Epigenetic Regulation of cccDNA Functions and HBV Replication)
Show Figures

Figure 1

19 pages, 1576 KiB  
Review
Mechanism of Hepatitis B Virus cccDNA Formation
by Lei Wei and Alexander Ploss
Viruses 2021, 13(8), 1463; https://doi.org/10.3390/v13081463 - 27 Jul 2021
Cited by 53 | Viewed by 10460
Abstract
Hepatitis B virus (HBV) remains a major medical problem affecting at least 257 million chronically infected patients who are at risk of developing serious, frequently fatal liver diseases. HBV is a small, partially double-stranded DNA virus that goes through an intricate replication cycle [...] Read more.
Hepatitis B virus (HBV) remains a major medical problem affecting at least 257 million chronically infected patients who are at risk of developing serious, frequently fatal liver diseases. HBV is a small, partially double-stranded DNA virus that goes through an intricate replication cycle in its native cellular environment: human hepatocytes. A critical step in the viral life-cycle is the conversion of relaxed circular DNA (rcDNA) into covalently closed circular DNA (cccDNA), the latter being the major template for HBV gene transcription. For this conversion, HBV relies on multiple host factors, as enzymes capable of catalyzing the relevant reactions are not encoded in the viral genome. Combinations of genetic and biochemical approaches have produced findings that provide a more holistic picture of the complex mechanism of HBV cccDNA formation. Here, we review some of these studies that have helped to provide a comprehensive picture of rcDNA to cccDNA conversion. Mechanistic insights into this critical step for HBV persistence hold the key for devising new therapies that will lead not only to viral suppression but to a cure. Full article
(This article belongs to the Special Issue Epigenetic Regulation of cccDNA Functions and HBV Replication)
Show Figures

Figure 1

Back to TopTop