Recombinant Binding Proteins and Genetically Engineered T-cells Targeting Intracellular Neoantigens

A special issue of Antibodies (ISSN 2073-4468). This special issue belongs to the section "Antibody Discovery and Engineering".

Deadline for manuscript submissions: 25 February 2026 | Viewed by 1131

Special Issue Editors


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Guest Editor
Helmholtz-Centre for Infection Research, Structure and Function of Proteins, Inhoffenstraße 7, D 38124 Braunschweig, Germany
Interests: antibody engineering; selection of human antibodies; cancer therapy; intracellular antibodies
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Guest Editor
1. Division of Renal Medicine, Department of Medicine, Brigham and Women’s Hospital, Boston, MA 02115, USA 2. Department of Medicine, Harvard Medical School, Boston, MA 02115, USA
Interests: inflammation; immunology of infectious diseases; innate immunity; cellular immunology; immune regulation; inflammatory diseases; autoimmunity; human immunology

Special Issue Information

Dear Colleagues,

Two different strategies are currently at the forefront of clinical interest for targeting intracellular neoantigens in benign and malignant diseases: T-cell-receptor (TCR)-engineered T-cells and recombinant antibodies. Recombinant T-cell-based therapies targeting neoantigens use T-cells expressing a recombinant complete TCR (TCR-T-cell), a chimeric antigen receptor with the variable domains of a neoepitope-reactive TCR are fused to the chimeric antigen receptor as a binding domain (TCR-CAR T-cell) or a TCR-like antibody as a binding domain (TCR-like-CAR T-cell). In contrast to the use of recombinant T-cells, recombinant binding proteins, including antibodies, can be directly applied to cancer patients. The recombinant binding proteins targeting MHC/neopeptide complexes include DARPins, TCR-like antibodies, bispecific antibodies in the format CD3 x TCR-like antibody or CD3 x soluble TCR, as well as intrabodies. Both strategies have their pros and cons and will be discussed in this Special Issue.

These developments are becoming intensified through the identification of new neopeptide/MHC complexes with cognate TCRs by screening the T-cell repertoires of healthy donors and cancer patients with dendritic cells presenting the predicted neopeptide/MHC complex or by screening a personalized CD8+ T-cell library with soluble neoantigen-MHC capture reagents.

Interestingly, lipid nanoparticles carrying therapeutic mRNA have become a practical tool for the targeted in vivo delivery of TCRs, TCR CARs, TCR-like CARs, bispecific antibodies, and intrabodies. However, different limitations should be considered, such as the loss of neoantigens, the modification of antigen peptide presentation, tumor heterogeneity, and the immunosuppressive activity of the tumor microenvironment. Nevertheless, the simultaneous application of immune-checkpoint-blocking antibodies and CRISPR/Cas9 based-genome-editing tools to engineer different recombinant T-cells with enhanced therapeutic functions could make T-cell therapy more efficient and pave the way for its routine clinical application.

Prof. Dr. Thomas Böldicke
Dr. Ana Maria Waaga-Gasser
Guest Editors

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Keywords

  • neoantigens
  • TCR-like antibodies
  • intrabodies
  • bispecific antibody (CD3 × TCR, CD3 × TCR-like antibody)
  • artificial TCR
  • TCR CARs
  • TCR-like CARs
  • therapeutic mRNA
  • checkpoint-blocking antibodies
  • CRISPR/Cas9-based-genome-editing

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Published Papers (1 paper)

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Research

20 pages, 2671 KiB  
Article
Three-Dimensional Modeling of Camelus dromedarius T Cell Receptor Gamma (TRG)_Delta (TRD)/CD1D Complex Reveals Different Binding Interactions Depending on the TRD CDR3 Length
by Salvatrice Ciccarese, Marie-Paule Lefranc, Giulia C. M. Perrone, Pietro D’Addabbo and Ciro Leonardo Pierri
Antibodies 2025, 14(2), 46; https://doi.org/10.3390/antib14020046 - 29 May 2025
Viewed by 285
Abstract
Background: In the adaptive immune response of the dromedary (Camelus dromedarius, Camdro), the T cell receptor (TR) repertoire of the gamma–delta (γδ) T cells is unusually diversified both by somatic hypermutation in rearranged TR gamma (TRG) and delta (TRD) genes and [...] Read more.
Background: In the adaptive immune response of the dromedary (Camelus dromedarius, Camdro), the T cell receptor (TR) repertoire of the gamma–delta (γδ) T cells is unusually diversified both by somatic hypermutation in rearranged TR gamma (TRG) and delta (TRD) genes and by the diversity in sequence and length of the third complementarity-determining region (CDR3) of the TRD chain. Methods: The purpose was to investigate, in the absence of 3D structures, the role of Camdro γδ T cells, focusing on the binding interactions at the interface between the V-gamma and V-delta domains, and in complex with the CD1D, a major histocompatibily class I (MH1)-like glycoprotein presenting lipid antigen in association with B2M. A combination of hypermutated TRG dromedary cDNA clones was paired with TRD clones bearing very long, long, or short CDR3s, all isolated from the spleen of a single animal. Results: The 3D models of the Camdro TRG_TRD/CD1D_B2M complexes were inferred using the Homo sapiens 3D structure and the ImMunoGeneTics (IMGT) numbering for V, C, and G domains, and investigated for binding interactions at the interface of the paired V-gamma_V-delta and at the interface with CD1D. Our results suggest that transcripts with long CDR3s may derive from a population of CD1D-restricted γδ T cells. Both the CD1D G-alpha1-like and G-alpha-2 like domain helices were contacted by both the V-gamma and V-delta CDR-IMGT loops. Conclusions: Our findings further emphasize the similarity between the γδ T cells population we analyzed in Camelus dromedarius and the CD1D-restricted γδ NKT cells in Homo sapiens. Full article
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