Genetic Diversity Analysis of Cymbidium eburneum Lindl. (Orchidaceae) Based on SSR Markers
Abstract
1. Introduction
2. Materials and Methods
2.1. Plant Materials and DNA Extraction
2.2. SSR Primer Development, Screening, and PCR Amplification
2.3. Data Statistics and Analysis
3. Results
3.1. Distribution Characteristics of SSR Loci in the C. eburneum Lindl Transcriptome
3.2. Polymorphism Analysis
3.3. Phylogenetic Analysis of C. eburneum Lindl. Germplasm Resources
3.4. Spatial Genetic Structure Based on Principal Coordinate Analysis (PCoA)
3.5. Population Genetic Structure Analysis
4. Discussion
4.1. Effectiveness and Advantages of SSR Markers in C. eburneum Lindl.
4.2. Genetic Diversity Level of C. eburneum Lindl. Germplasm Resources
4.3. Genetic Structure Differentiation and Conservation Strategies
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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| Origin | No. of Samples |
|---|---|
| Guangxi | 81 |
| Hainan | 3 |
| Yunnan | 2 |
| Vietnam | 3 |
| Cultivated Variety | 7 |
| Total | 96 |
| Primer ID | Number of Samples | Na | Ne | I | Ho | He | PIC |
|---|---|---|---|---|---|---|---|
| SSR108-1 | 96 | 16 | 2.573 | 1.538 | 0.240 | 0.611 | 0.594 |
| SSR108-4 | 96 | 7 | 1.379 | 0.677 | 0.135 | 0.275 | 0.268 |
| SSR108-6 | 88 | 15 | 2.933 | 1.451 | 0.852 | 0.659 | 0.603 |
| SSR108-11 | 96 | 12 | 2.889 | 1.457 | 0.729 | 0.654 | 0.621 |
| SSR108-13 | 96 | 12 | 2.562 | 1.347 | 0.479 | 0.610 | 0.568 |
| SSR108-20 | 96 | 3 | 1.811 | 0.663 | 0.01 | 0.448 | 0.352 |
| SSR108-23 | 96 | 8 | 1.827 | 0.995 | 0.25 | 0.453 | 0.428 |
| SSR108-26 | 96 | 16 | 2.519 | 1.555 | 0.177 | 0.603 | 0.588 |
| SSR108-43 | 96 | 5 | 3.026 | 1.197 | 0.302 | 0.669 | 0.604 |
| SSR108-47 | 96 | 4 | 1.500 | 0.683 | 0.281 | 0.333 | 0.314 |
| SSR108-55 | 96 | 7 | 1.980 | 0.954 | 0.177 | 0.495 | 0.441 |
| SSR108-64 | 96 | 8 | 1.924 | 1.036 | 0.229 | 0.480 | 0.455 |
| SSR108-77 | 96 | 10 | 2.395 | 1.123 | 0.375 | 0.582 | 0.511 |
| SSR108-81 | 96 | 13 | 1.831 | 1.133 | 0.292 | 0.454 | 0.439 |
| SSR108-93 | 96 | 6 | 1.136 | 0.311 | 0.031 | 0.120 | 0.117 |
| SSR108-95 | 96 | 8 | 1.256 | 0.530 | 0.083 | 0.204 | 0.200 |
| Mean | 95.5 | 9.375 | 2.096 | 1.041 | 0.290 | 0.478 | 0.444 |
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Hu, F.; Zhang, Z.; Lu, S.; Chen, Z.; Zhong, H.; Xi, L.; Yang, G. Genetic Diversity Analysis of Cymbidium eburneum Lindl. (Orchidaceae) Based on SSR Markers. Horticulturae 2026, 12, 502. https://doi.org/10.3390/horticulturae12040502
Hu F, Zhang Z, Lu S, Chen Z, Zhong H, Xi L, Yang G. Genetic Diversity Analysis of Cymbidium eburneum Lindl. (Orchidaceae) Based on SSR Markers. Horticulturae. 2026; 12(4):502. https://doi.org/10.3390/horticulturae12040502
Chicago/Turabian StyleHu, Feilong, Zhe Zhang, Shunjiao Lu, Zhiheng Chen, Haotian Zhong, Liang Xi, and Guangsui Yang. 2026. "Genetic Diversity Analysis of Cymbidium eburneum Lindl. (Orchidaceae) Based on SSR Markers" Horticulturae 12, no. 4: 502. https://doi.org/10.3390/horticulturae12040502
APA StyleHu, F., Zhang, Z., Lu, S., Chen, Z., Zhong, H., Xi, L., & Yang, G. (2026). Genetic Diversity Analysis of Cymbidium eburneum Lindl. (Orchidaceae) Based on SSR Markers. Horticulturae, 12(4), 502. https://doi.org/10.3390/horticulturae12040502

