Search Results (4,775)

Background: Among gynecological malignancies, ovarian cancer (OC) remains a leading cause of mortality worldwide, often characterized by the highest fatality-to-case ratio due to its asymptomatic progression and late-stage detection. Despite substantial investigation, the root cause of disease development and pathology remains unknown. Early detection is critical for improving OC prognosis. Unfortunately, because of the lack of identifiable symptoms in the early stages, the disease is frequently detected late. As a result, regular check-ups, being aware of risk factors, and paying attention to unusual symptoms can all help discover OC early. Apolipoproteins (APOs) and Annexins (ANXs) have recently been linked to OC. Aim: We conducted a cutting-edge bioinformatics investigation to find novel therapeutic targets and precise biomarkers linked to OC against APO and ANX. Methods: We started by compiling the ANX and APO families via HUGO Gene Nomenclature Committee (HGNC) homepage. Next, we accessed GEPIA2 to compare the relative messenger RNA (mRNA) expression levels of all ANX and APO family members across the cancer genome atlas (TCGA)-OC cohort and matched normal and GTEx data. Prognostic analysis of all significantly expressed ANXs and APOs was performed via Kaplan–Meier (KM) plotter. cBioPortal was used for mutational analysis of prognostic ANXs and APOs. Finally, we ran functional enrichment, molecular docking, and molecular dynamics (MD) simulation analyses. Results: Overall, the results suggest that ANXA2 and its related genetic changes represent potential focal points for precision oncology, offering a computational rationale for the development of target-driven therapeutic interventions in OC. Conclusions: Molecular docking and MD simulation analyses identified curcumin as a potential inhibitor of ANXA2, demonstrating stable binding affinity and structural conservation throughout the simulation period. These computational findings characterize curcumin as a promising candidate for targeting ANXA2 in OC, warranting further experimental validation to confirm its therapeutic efficacy. Full article

WRKY is a crucial transcription factor involved in plant growth, development, and responses to abiotic stress. In the present study, a total of 182 AaWRKY transcription factor members were identified across the Artemisia argyi genome and found to be distributed across 17 chromosomes. Evolutionary analysis revealed that segmental duplication served as the primary driver for family expansion, with the evolutionary trajectory shaped by strong purifying selection (Ka/Ks < 1.0). Phylogenetic classification categorized these members into seven highly conserved subgroups, while physicochemical analysis indicated that most AaWRKYs are unstable, hydrophilic proteins, consistent with the rapid turnover required for transcriptional switches. Transcriptomic profiling unveiled significant tissue-specific expression patterns, with over 50% of the members predominantly enriched in roots and specific genes, such as AaWRKY11, implicated in the regulation of leaf senescence. Protein–protein interaction (PPI) network analysis identified AaWRKY110 as a central regulatory hub linking the MAPK signaling pathway with the isoflavonoid biosynthetic machinery. Furthermore, comparative transcriptomic analysis between aphid-resistant (Ai20K) and susceptible (Ai72G) cultivars demonstrated that resistance is conferred by a priming mechanism involving high basal expression of key candidates, including AaWRKY82, 108, 128, and 71. In contrast, the susceptible genotype exhibited a delayed and ineffective hypersensitive-like response. Collectively, these findings elucidate the evolutionary dynamics of the AaWRKY family and provide critical genetic targets for the concurrent improvement of medicinal metabolite accumulation and biotic stress resilience in Artemisia argyi via molecular breeding. Full article

Insects underpin key ecosystem services. Yet tree-associated insect communities remain comparatively poorly documented, particularly in temperate forests. This study aimed to characterize the diversity and abundance of insect assemblages associated with the predominantly insect-pollinated forest tree Tilia cordata Mill. in protected areas in Lithuania, and to assess the occurrence of known and putative pollinator groups within these assemblages. We quantified insect assemblages associated with Tilia cordata using two sampling methods but did not directly measure pollination effectiveness (e.g., pollen loads, visitation rates to flowers, or fruit/seed set). Consequently, our inferences refer to the presence and composition of potential pollinators rather than demonstrated pollination function or realized pollination services. Fieldwork was conducted over two years in six protected T. cordata sites in Lithuania using two complementary sampling methods: net sampling and sticky traps. Sampling was structured into three observation periods corresponding to T. cordata phenology: pre-flowering (I), flowering (II) and post-flowering (III). In total, 207 insect taxa from 15 orders were recorded by net sampling and 86 taxa from 11 orders by sticky traps. Net sampling showed significantly higher diversity (Shannon H = 3.81) than sticky traps (H = 2.10). Hemiptera, Coleoptera and Diptera were the most common groups, and most taxa occurred at low to moderate abundances, with only a few species showing local dominance in specific periods or sites. Taxa documented in the literature as significant pollinators were consistently present but at low relative abundances (about 5–10% in total). Insect assemblage composition and species proportions varied among phenological periods and between years, with no clear, consistent peak in overall insect abundance or diversity associated specifically with the T. cordata flowering phase. These findings indicate that T. cordata stands in protected areas harbor diverse insect assemblages typical of temperate deciduous and mixed forest habitats and include a broad spectrum of non-bees and other potential pollinators. Therefore, we did not detect a distinct peak in insect abundance or species richness during the T. cordata flowering period, indicating that flowering did not coincide with a pronounced maximum in pollinator-related insect activity. However, the quantitative patterns observed suggest that, in this context, T. cordata provides only modest support for pollinator guilds, and its role is better interpreted as one component of wider forest insect diversity rather than as a primary driver of pollination services. Full article

Quercus glabrescens Benth. (white oak) is a widespread temperate forest species endemic to Mexico, known to form hybrids with related species in regions of sympatry. Q. glabrescens presents weak reproductive barriers with other white oak species; hence, in this study, we tested whether increasing the richness of sympatric white oak species contributes to greater genetic diversity in Q. glabrescens. In total, eight microsatellite primers (eight nSSRs and four cpSSRs) were analyzed in five Q. glabrescens populations: one allopatric (without the presence of other white oak) and four sympatric populations, across which the number of white oak species occurring in sympatry with Q. glabrescens ranged from one to four (Q. obtusata, Q. rugosa, Q. laeta, and Q. potosina). In total, 100 individuals were analyzed. In general, sympatric populations had the highest levels of genetic diversity (Gd), Shannon diversity index (H), and expected heterozygosity (He) compared with the allopatric population of Q. glabrescens, regardless of microsatellite origin. Furthermore, estimates of genetic differentiation (F_ST and R_ST) were consistently higher for cpSSRs than for nSSRs. Genetic diversity in Q. glabrescens (H, cpSSRs; He and F nSSRs) increased significantly with the number of white oak species occurring in sympatry. Our results support the hypothesis that as the number of white oak species growing in sympatry with Q. glabrescens increases, its genetic diversity also increases, possibly due to introgressive hybridization. This pattern provides a robust framework for predicting how associated oak species may influence the genetic diversity of Q. glabrescens, which permits the assignment of a new conservation status based on species richness growing in sympatry. Full article

Background: Tessadori–Bicknell–van Haaften syndrome (OMIM #619759) is a rare autosomal dominant neurodevelopmental disorder associated with heterozygous variants in genes encoding histone H4 proteins. The condition is characterized by global developmental delay, craniofacial dysmorphism, hypotrophy, intellectual disability, and ophthalmologic anomalies. More than 30 individuals with variants in histone H4 genes have been reported to date, reflecting the genetic heterogeneity of this emerging disorder. According to OMIM, the association between the H4C11 gene and Tessadori–Bicknell–van Haaften syndrome 2 is currently considered provisional. Methods: We report the case of a 5-year-old female presenting with expressive language delay, social interaction difficulties, and craniofacial features including microcephaly, exophthalmos, and periorbital fullness (“puffy eyes”). Family history revealed two sisters with borderline intellectual functioning who have not undergone genetic testing. The patient’s father carried the same heterozygous H4C11 variant (c.97C > T), while maternal testing was negative. Results: Neuropsychological evaluation revealed borderline intellectual functioning (IQ 73 at first assessment, 85 at follow-up) with persistent expressive language impairment. Ophthalmologic examination confirmed congenital exophthalmos and hypermetropic astigmatism. Laboratory investigations showed low ferritin and mildly elevated TSH levels, which may have contributed to the observed growth delay. At follow-up, the patient showed an increase in IQ score (73 to 85); however, test–retest variability cannot be excluded. Conclusions: This case highlights the importance of careful clinical assessment and cautious interpretation of genetic findings in children with neurodevelopmental delay. Familial segregation of a variant of uncertain significance (VUS), in the absence of functional evidence, should be interpreted conservatively and integrated with detailed phenotypic evaluation to guide clinical management and follow-up. Full article

Cotton, a globally vital cash crop, is severely constrained by V. dahliae. Lignin, a core structural component of plant cell walls, plays a crucial role in physical defense, with its biosynthesis regulated by hydroxycinnamoyltransferase (HCT)—a key enzyme in the phenylpropanoid pathway. However, the HCT gene family in upland cotton (Gossypium hirsutum) and its role in resistance to V. dahliae remain poorly understood. In this study, we performed a genome-wide identification of the HCT gene family in G. hirsutum, identifying 74 GhHCT genes that were classified into five evolutionary subfamilies. Bioinformatics analysis revealed that GhHCT proteins exhibit conserved functional domains but diverse gene structures, with promoter regions enriched in hormone-responsive and stress-responsive cis-acting elements. Expression profiling revealed that multiple GhHCT genes were significantly induced in response to V. dahliae infection. Three genes, GhHCT2, GhHCT35, and GhHCT47, showed significantly higher expression levels in resistant cultivars than in susceptible cultivars during early infection stages, suggesting pivotal roles in defense. These three candidate genes, which contain MeJA/SA-responsive elements in their promoters, may enhance resistance by regulating lignin synthesis to strengthen the cell wall barrier. In summary, this study provides the first comprehensive characterization of the HCT gene family in upland cotton. It identifies key candidates for improving resistance to V. dahliae, offering valuable genetic resources for molecular breeding. Full article

Argali (Ovis ammon), the largest wild sheep in Asia, are of high conservation concern and remain taxonomically and genetically debated across parts of their range. We investigated population structure, relatedness, and inbreeding within Argali sampled in Kyrgyzstan using the Illumina Ovine High-Density SNP array, with an emphasis on dense within-population sampling rather than range-wide comparisons. After quality control, 72 individuals and 135,242 markers were retained for analysis. Principal component analysis revealed subtle genetic variation within the sampled population, but no clustering consistent with discrete subspecies. In particular, we found no genomic support for separating O. a. polii and O. a. karelini within Kyrgyzstan, suggesting that they represent a single genetic unit in this region. Estimates of identity by descent indicated a high average relatedness (0.35), consistent with harem-based breeding systems typical of wild sheep, while individual inbreeding coefficients averaged near zero, with some evidence of moderate inbreeding in a subset of animals. Together, these results characterize fine-scale genetic structure and kinship within Tian Shan Argali and provide a regional genomic baseline for conservation planning in Kyrgyzstan. Our findings highlight the importance of maintaining connectivity within and among managed populations while acknowledging that broader inference will require sampling across the core Pamir range and other parts of the species’ distribution. Full article

The genus Juniperus species is widely distributed in the Northern Hemisphere of the planet Earth. These species are notable for their ability to adapt to extreme environmental conditions, playing a crucial role in ecosystem structure and function. Currently, their expansion is being driven by anthropogenic activities and climate change, posing significant challenges for both control and conservation. The objective of this review was to synthesize the available evidence regarding the ecological importance and impacts of Juniperus on ecosystems, promoting a holistic perspective that contributes to the achievement of the United Nations 2030 Agenda for Sustainable Development. A systematic literature search was conducted using the Scopus database, and only the documents published between 2001 and 2025 were considered for the investigation. The results showed that these species possess a high ecological versatility, favoring their invasive success in disturbed ecosystems, particularly under the influence of climate change and land-use changes. Conversely, Juniperus species facilitate positive ecological outcomes by providing essential ecosystem services that benefit both the human population and the flora and fauna present in these ecosystems. Nevertheless, their expansion also causes negative effects, such as the suppression of herbaceous shrubs and understory cover, alteration of the hydrological function, and accelerated soil erosion, among others. Consequently, the genus Juniperus exhibits a dual ecological role, acting as a hero to many species within these ecosystems, yet a villain to others. In this sense, given its remarkable adaptive dynamism under scenarios of climate change and continuous anthropogenic alterations, it is imperative to promote comprehensive conservation and restoration strategies. These should include ecological monitoring, invasive species control, genetic management, and habitat restoration. Such efforts must be supported by long-term interdisciplinary research to understand and mitigate the ecological, genetic, and social impacts resulting from its expansion. Furthermore, these investigations and strategies must be flexible and locally contextualized to promote genuine ecosystem resilience in the face of the ongoing environmental transformations. Full article

The Carpathian Basin is a coherent biogeographic unit whose wildlife populations and pathogen dynamics are increasingly reshaped by administratively fragmented governance, land-use change and linear infrastructure. This review synthesizes evidence that the permeability patterns governing host movement also structure the transboundary exchange of genes and infections, creating a connectivity substrate for conservation genetics and One Health risk. Focusing on wild boar (Sus scrofa), red deer (Cervus elaphus), roe deer (Capreolus capreolus), fallow deer (Dama dama) and the expanding golden jackal (Canis aureus), we integrate population genetic inferences with wildlife epidemiology to examine how highways, border fences and asymmetric management (e.g., supplemental, feeding practices, hunting pressure and surveillance regimes) can generate biological asymmetries across boundaries. We highlight African swine fever as an emblematic disturbance in wild boar populations, discuss cervid risks including tick-borne pathogens and chronic wasting disease (CWD) preparedness and evaluate zoonotic threats associated with carnivore expansion (e.g., Echinococcus spp.). We propose a Carpathian Basin-level monitoring and data-sharing architecture, coupling harmonized passive surveillance, strategic active surveillance for priority pathogens, and standardized genetic marker panels supported by interoperable metadata. A Basin-scale One Health approach is a pragmatic prerequisite for the coordinated prevention, early detection and resilient management of cross-border epizootics and zoonotic threats. Full article

As the hybrid offspring of cattle and yak, cattle–yaks suffer from male sterility, manifesting as cascading spermatogenic failure. Despite the Y chromosome’s pivotal role in spermatogenesis, the absence of a high-quality yak Y assembly has long impeded mechanistic understandings from this perspective. Here, a near-complete 42.4 Mb yak Y chromosome is constructed through a multi-stage assembly strategy that integrates de novo assembly with pangenome graph construction and Hi-C guided refinement. By developing a rigorously standardized gene annotation pipeline for precise cross-species comparison, we find that yaks have undergone a greater expansion of Y-linked ampliconic genes than cattle. Integrating this ampliconic landscape with short-read and full-length transcriptomics further demonstrates that yaks exhibit a drastic 2-to-4-fold increase in transcriptionally active copies of spermatogenesis-related ampliconic genes (including TSPY1, ZNF280BY, HSFY and PRAMEY) relative to cattle. Given negligible homology outside the pseudoautosomal region and conservation of key meiotic proteins, we propose a ‘cis-trans regulatory mismatch’ model driven by divergent Y-linked amplification as a working hypothesis to explain the primary genetic mechanism of cattle–yak male sterility. Together, these findings offer critical insights for addressing cattle–yak male sterility and establish the Y chromosome as an active driver of reproductive isolation beyond its traditional degenerate characterization. Full article

Background/Objectives: Management of bipolar disorder is marked by variability in lithium response, with responders constituting a distinct clinical subgroup. Although pharmacogenetic studies implicate polymorphisms in neuroplasticity-related genes (BDNF) and hypothalamic–pituitary–adrenal (HPA) axis regulators (NR3C1), the underlying biophysical mechanisms remain poorly characterized. This study aims to bridge this structural–mechanistic gap by quantifying the atomic-level effects of key lithium-response polymorphisms on protein–protein interaction stability and conformational dynamics. Methods: Variant sequences for BDNF rs6265 and NR3C1 rs56149945 were generated and structurally modeled with SWISS-MODEL. Protein–protein interaction analyses focused on the BDNF–TrkB and NR3C1–FKBP5 systems. Structural alignment and conformational comparisons were performed with ChimeraX and US-align, while interaction energetics were evaluated with PRODIGY and HawkDock. Conformational flexibility was assessed using CABS-flex through RMSF analysis. Results: Structural validation showed acceptable model quality. Binding analyses indicated stronger interactions in the variant complexes. In the BDNF–TrkB complex, binding affinity shifted from −13.8 to −15.1 kcal/mol with an ~8.5-fold lower dissociation constant, while the NR3C1–FKBP5 variant complex shifted from −16.3 to −18.8 kcal/mol with an ~65-fold lower dissociation constant. MM/GBSA calculations supported increased stability, with binding energies changing from −61.98 to −83.91 kcal/mol (BDNF–TrkB) and from −18.88 to −31.25 kcal/mol (NR3C1–FKBP5). Structural superposition showed high conservation of global folds (pruned RMSD 0.779 Å and 0.310 Å; TM-scores 0.753 and 0.967). RMSF profiles were largely overlapping, indicating localized interface adjustments rather than global conformational changes. Conclusions: These findings suggest that lithium-response polymorphisms may modulate protein–protein interaction stability while preserving overall structure, providing a structural framework for exploring genetic influences on lithium treatment response. Full article

Ulluco (Ullucus tuberosus Caldas) is an Andean tuber crop of high nutritional and genetic importance. However, its vegetative propagation promotes the accumulation of pathogens and limits the availability of uniform, high-quality planting material. In this study, an efficient and reproducible in vitro micropropagation protocol was established for an ulluco genotype from the Amazonas region of Peru. Nodal segments were cultured on MS (Murashige and Skoog) medium supplemented with 6-benzylaminopurine (BAP) or kinetin (KIN) at increasing concentrations (0.0–2.0 mg L⁻¹). For rooting, in vitro-derived shoots were transferred to MS medium supplemented with indole-3-butyric acid (IBA) or 1-naphthaleneacetic acid (NAA) at the same concentration range (0.0–2.0 mg L⁻¹). The explants exhibited a high basal morphogenetic capacity; however, the addition of cytokinins significantly enhanced the response. KIN at 2.0 mg L⁻¹ achieved 100% regeneration, whereas BAP at 0.2 mg L⁻¹ maximized shoot proliferation, producing 2.07 shoots per explant. Shoot elongation was greater with KIN at 1.0 mg L⁻¹, reaching 39.15 mm. In the rooting phase, the response varied depending on the type and concentration of auxin. NAA at 0.1 mg L⁻¹ resulted in 100% rooting and produced the greatest root length (41.93 mm), whereas IBA at 0.1 mg L⁻¹ maximized the number of roots (4.67), although roots were shorter. Rooted plantlets exhibited 100% survival after eight weeks of acclimatization. This protocol provides an effective system for the rapid production of vigorous and uniform clonal plants and represents a useful tool for the propagation, conservation, and future biotechnological improvement of ulluco. Full article

Land use change profoundly impacts the trade-offs and synergies among ecosystem services in ecologically fragile watersheds. Optimizing land use patterns based on ecological function zoning is an important approach to coordinate multiple ecosystem services and promote sustainable watershed management. This study focuses on the Wuding River Basin within the Chinese Loess Plateau, using Self-Organizing Map, multi-objective genetic algorithms, and the Future Land-Use Simulation model to explore land use optimization schemes. The results show that the windbreak and sand fixation service in the Wuding River Basin presents a spatial pattern of higher values in the northwest and lower values in the southeast, while the other six services exhibit a pattern of higher values in the east and lower values in the west. Based on the ecosystem service cluster characteristics, the basin can be divided into soil and water conservation zones, habitat conservation zones, and ecologically fragile zones. The trade-offs and synergies between ecosystem services within different zones differ significantly, with the trade-off between food supply, soil conservation, and habitat quality being particularly prominent. After optimization, the food supply and soil conservation in the soil and water conservation zones increased by an average of 0.63 × 10⁴ t and 1.94 × 10⁵ t, respectively. The food supply in the habitat conservation zones increased by 0.11 × 10⁴ t, while habitat quality remained stable. In the ecologically fragile area, water production and carbon sequestration services increased by an average of 0.26 × 10⁴ t and 0.58 × 10⁵ t, respectively. During the optimization process, the reasonable allocation of grassland and unused land played a key role in balancing service conflicts. This study provides a scientific basis for coordinating trade-offs in watershed ecosystem services and achieving land use optimization management through the framework of service clusters, functional zones, and multi-objective optimization. Full article

Cadmium (Cd) contamination severely threatens crop productivity and food safety, particularly in maize (Zea mays L.), which exhibits relatively high capacities for metal uptake and translocation. Metal tolerance proteins (MTPs) play essential roles in metal homeostasis and detoxification; however, the functions of maize MTP under Cd stress remain poorly understood. In this study, a comprehensive expression analysis of the maize MTP gene family revealed that two Zn-CDF members, ZmMTP1-1 and ZmMTP1-2, displayed the strongest and most consistent transcriptional induction in response to Cd stress, especially in roots. Phylogenetic and structural analyses confirmed that both genes are closely related to MTP1 homologs from other plant species, while exhibiting distinct gene structures and regulatory features. Functional characterization in transgenic Arabidopsis thaliana demonstrated that overexpression of ZmMTP1-1 or ZmMTP1-2 significantly enhanced tolerance to Cd and Zn stress, as reflected by improved seed germination, root growth, survival, and biomass accumulation. Enhanced metal tolerance was associated with elevated antioxidant enzyme activities, reduced oxidative damage, and coordinated upregulation of endogenous metal transporter genes. Moreover, heterologous expression of ZmMTP1-1 in yeast further supported its conserved role in Cd tolerance. Collectively, these findings indicate that ZmMTP1-1 and ZmMTP1-2 contribute to Cd detoxification through coordinated metal transport and stress-response pathways, providing potential genetic resources for improving heavy metal tolerance in maize. Full article

Sirtuins are conserved proteins regulating oxidative stress and lifespan. While they enhance cellular adaptability, the long-term biological consequences of combining bioactive compounds with nanomaterials remain poorly understood. This study examined the effects of combined resveratrol and nanodiamonds (RV+NDs) in two Acheta domesticus strains: wild-type (H) and longevity-selected (D). The impact was assessed across developmental stages, focusing on survival, total sirtuin activity, specific isoforms (SIRT1, SIRT6), oxidative stress, antioxidant enzymes, and DNA damage markers. RV+NDs exposure did not result in consistent lifespan extension or sustained oxidative stress. Molecular responses were strongly dictated by genetic background and age, as reflected by significant survival differences between strains H and D (p < 0.001) Notably, a persistent increase in total sirtuin activity (~60% ↑ across developmental stages) occurred exclusively in the longevity-selected strain, though no stable activation of SIRT1 or SIRT6 was detected. While classical redox parameters showed only transient changes, DNA damage response markers emerged as the most sensitive indicators of RV+NDs exposure. Overall, the findings demonstrate that RV+NDs treatment induces context-dependent, adaptive molecular responses. This highlights the critical role of genetic background and age in shaping ageing-related pathways, suggesting that nanodelivery systems do not produce universal effects across different genotypes. Full article