Morphology and Phylogeny Reveal New Species and Records of Diplodia, Dothiorella, and Phaeobotryon Associated with Tree Cankers in Xizang, China
Abstract
:1. Introduction
2. Materials and Methods
2.1. Specimens and Strains
2.2. Morphological Observations
2.3. DNA Extraction and Amplification
2.4. Molecular Phylogeny
3. Results
3.1. Phylogeny
3.2. Taxonomy
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Species | Isolates | GenBank Accession Number | ||
---|---|---|---|---|
ITS | tef1 | tub2 | ||
Botryosphaeria dothidea | CBS 115476 * | AY236949 | AY236898 | AY236927 |
Diplodia acerigena | CGMCC 3.24157 | OQ190518 | OQ241452 | NA |
Diplodia acerigena | UESTCC 22.0074 | OQ190519 | OQ241453 | OQ338163 |
Diplodia acerigena | UESTCC 22.0075 | OQ190520 | OQ241454 | OQ338164 |
Diplodia africana | CBS 120835 * | KF766155 | KF766397 | KF766129 |
Diplodia africana | STE-U 5946 | EF445344 | EF445383 | NA |
Diplodia afrocarpi | CBS 131681 * | MT587333 | MT592035 | MT592471 |
Diplodia agrifolia | CBS 124.30 | KX464087 | KX464557 | KX464783 |
Diplodia alanphillipsii | IRAN 1508C | KF890208 | KF890190 | NA |
Diplodia alanphillipsii | IRAN 1509C | KF890209 | KF890191 | NA |
Diplodia alanphillipsii | IRAN 1574C | MT258875 | MT270153 | NA |
Diplodia allocellula | CBS 130408 * | JQ239397 | JQ239384 | JQ239378 |
Diplodia allocellula | CMW 36470 | JQ239399 | JQ239386 | JQ239380 |
Diplodia arengae | MFLU 17-2769 * | MG762771 | MG762774 | MG783039 |
Diplodia bulgarica | CBS 124254 | GQ923853 | GQ923821 | NA |
Diplodia bulgarica | CBS 124135 * | GQ923852 | GQ923820 | NA |
Diplodia citricarpa | CBS 124715 * | KF890207 | KF890189 | KX464784 |
Diplodia corticola | CBS 112549 * | AY259100 | AY573227 | DQ458853 |
Diplodia corticola | CBS 112546 | AY259090 | EU673310 | EU673117 |
Diplodia corticola | CFCC 71193 | PV264850 | NA | PV339814 |
Diplodia corticola | N183 | PV264851 | NA | PV339815 |
Diplodia crataegicola | MFLU 15-1311 * | KT290244 | KT290248 | KT290246 |
Diplodia cupressi | CBS 168.87 * | DQ458893 | DQ458878 | DQ458861 |
Diplodia cupressi | CBS 261.85 | DQ458894 | DQ458879 | DQ458862 |
Diplodia eriobotryicola | CBS 140851 * | KT240355 | KT240193 | MG015806 |
Diplodia estuarina | CMW 41363 | KP860829 | KP860674 | KP860752 |
Diplodia estuarina | CMW 41230 | KP860830 | KP860675 | KP860753 |
Diplodia fici-septicae | MFLUCC 20-0037 | MW063180 | MW183802 | NA |
Diplodia fici-septicae | NCYUCC 19-0007 | MW063181 | MW183803 | NA |
Diplodia fraxini | CBS 136010 * | KF307700 | KF318747 | MG015807 |
Diplodia fraxini | CBS 136011 | KF307711 | KF318748 | MG015808 |
Diplodia galiicola | MFLU15-1310 * | KT290245 | KT290249 | MT592471 |
Diplodia gallae | CBS 211.25 | KX464090 | KX464564 | KX464795 |
Diplodia gallae | CBS 212.25 | KX464091 | KX464565 | KX464796 |
Diplodia malorum | CBS 124130 * | GQ923865 | GQ923833 | NA |
Diplodia malorum | BN-37 | KT240360 | KT240198 | NA |
Diplodia mutila | CBS 112553 * | AY259093 | AY573219 | KY554743 |
Diplodia mutila | UESTCC 22.0064 | OQ190521 | OQ241455 | OQ338165 |
Diplodia mutila | UESTCC 22.0065 | OQ190522 | OQ241456 | OQ338166 |
Diplodia mutila | UESTCC 22.0069 | OQ190523 | OQ241457 | OQ338167 |
Diplodia mutila | UESTCC 22.0068 | OQ190524 | OQ241458 | OQ338168 |
Diplodia mutila | UESTCC 22.0067 | OQ190525 | OQ241459 | OQ338169 |
Diplodia mutila | UESTCC 22.0063 | OQ190526 | OQ241460 | OQ338170 |
Diplodia mutila | CFCC 71473 | PV264852 | PV268109 | PV339816 |
Diplodia neojuniperi | CPC 22753 * | KM006431 | KM006462 | NA |
Diplodia neojuniperi | CPC 22754 | KM006432 | KM006463 | NA |
Diplodia olivarum | CBS 121887 * | EU392302 | EU392279 | HQ660079 |
Diplodia olivarum | IMI 390972 | HM028640 | HQ660078 | HQ660080 |
Diplodia parva | KNU16-007 * | LC417238 | LC435495 | LC522938 |
Diplodia pipa | CGMCC 3.27062 * | PP192032 | PP197939 | PP197952 |
Diplodia pistaciicola | CGMCC 3.24156 | OQ190527 | OQ241461 | OQ338171 |
Diplodia pistaciicola | UESTCC 22.0071 | OQ190528 | OQ241462 | OQ275062 |
Diplodia pseudoseriata | CBS 124906 * | EU080927 | EU863181 | MG015820 |
Diplodia quercivora | CBS 133852 * | JX894205 | JX894229 | MG015821 |
Diplodia quercivora | MEAN 1017 | KU311198 | KU311201 | NA |
Diplodia rosulata | CBS 116470 * | EU430265 | EU430267 | EU673132 |
Diplodia rosulata | CBS 116472 | EU430266 | EU430268 | EU673131 |
Diplodia salicicola sp. nov. | CFCC 71412 * | PV264853 | PV268110 | PV339817 |
Diplodia salicicola sp. nov. | LZ100 * | PV264854 | PV268111 | PV339818 |
Diplodia sapinea | CBS 393.84 * | DQ458895 | DQ458880 | DQ458863 |
Diplodia sapinea | CBS 109726 | KX464094 | KX464568 | KX464800 |
Diplodia scrobiculata | CBS 118110 * | AY253292 | AY624253 | AY624258 |
Diplodia seriata | CBS 112555 * | AY259094 | AY573220 | DQ458856 |
Diplodia subglobosa | CBS 124133 * | GQ923856 | GQ923824 | MT592576 |
Diplodia subglobosa | CBS 124132 | DQ458887 | DQ458871 | DQ458852 |
Diplodia tsugae | CBS 418.64 * | DQ458888 | DQ458873 | DQ458855 |
Dothiorella dulcispinae | CBS 130413 | JQ239400 | JQ239387 | JQ239373 |
Dothiorella dulcispinae | CMW 36462 | JQ239402 | JQ239389 | JQ239375 |
Species | Isolates | GenBank Accession Number | ||
---|---|---|---|---|
ITS | tef1 | tub2 | ||
Dothiorella acacicola | CPC 26349 * | NR_145255 | KX228376 | NA |
Dothiorella acericola | KUMCC 18-0137 | MK359449 | MK361182 | NA |
Dothiorella acericola | CFCC 71537 | PV264855 | PV268112 | PV339819 |
Dothiorella acericola | N593 | PV264856 | PV268113 | PV339820 |
Dothiorella albiziae | MFLUCC 22-0057 * | ON751762 | ON799588 | ON799590 |
Dothiorella albiziae | MFLU 22-0093 | ON707683 | NA | ON677453 |
Dothiorella alpina | CGMCC 3.18001 | KX499645 | KX499651 | NA |
Dothiorella americana | UCD2272MO * | HQ288219 | HQ288263 | HQ288298 |
Dothiorella americana | UCD2252MO | HQ288218 | HQ288262 | HQ288297 |
Dothiorella brevicollis | CMW 36463 * | NR_111703 | JQ239390 | JQ239371 |
Dothiorella camelliae | UESTCC 22.0080 | OQ190530 | NA | OQ275063 |
Dothiorella camelliae | UESTCC 22.0079 | OQ190532 | OQ241465 | OQ275065 |
Dothiorella camelliae | UESTCC 22.0078 | OQ190533 | OQ241466 | OQ275066 |
Dothiorella camelliae | CGMCC 3.24158 | OQ190531 | OQ241464 | OQ275064 |
Dothiorella capri-amiss | CBS 121763 | EU101323 | EU101368 | KX464850 |
Dothiorella casuarini | CBS 120688 | DQ846773 | DQ875331 | NA |
Dothiorella chiangmaiensis | YW177 | NA | NA | NA |
Dothiorella citricola | ICMP16828 | EU673323 | EU673290 | EU673145 |
Dothiorella diospyricola | CBS 145972 | MT587398 | MT592110 | MT592581 |
Dothiorella dulcispinae | CMW 36460 | JQ239400 | JQ239387 | JQ239373 |
Dothiorella dulcispinae | CMW 25407 * | EU101300 | MT592120 | KX464862 |
Dothiorella guttulata | MFLUCC 17-0242 * | KY797637 | NA | NA |
Dothiorella heterophyllae | CMW 46458 * | MN103794 | MH548348 | MH548324 |
Dothiorella iberica | CBS 115041 * | AY573202 | AY573222 | EU673096 |
Dothiorella iberica | CBS 113189 | AY573199 | AY573230 | KX464855 |
Dothiorella iranica | IRAN1587C | KC898231 | KC898214 | NA |
Dothiorella italica | MFLUCC 17-0951 * | MG828897 | MG829267 | MT592592 |
Dothiorella juglandis | CBS 188.87 | EU673316 | EU673283 | EU673119 |
Dothiorella koae | CMW 48017 * | MH447652 | MH548338 | MH548327 |
Dothiorella lampangensis | MFLUCC 18-0232 | MK347758 | MK340869 | MK412874 |
Dothiorella longicollis | CBS 122068 | EU144054 | EU144069 | NA |
Dothiorella magnoliae | CFCC 51563 * | KY111247 | KY213686 | NA |
Dothiorella magnoliae | CFCC 71215 | PV264857 | NA | PV339821 |
Dothiorella mangifericola | CBS 121760 * | EU101290 | EU101335 | KX464877 |
Dothiorella mangifericola | IRAN1584C | KC898221 | KC898204 | NA |
Dothiorella moneti | MUCC505 * | EF591920 | EF591971 | EF591954 |
Dothiorella obovata | MFLUCC 22-0058 * | ON751763 | ON799589 | ON799591 |
Dothiorella obovata | MFLU 22-0094 | ON707682 | NA | ON677452 |
Dothiorella omnivora | CBS 140349 * | KP205497 | KP205470 | NA |
Dothiorella parva | CBS 124720 * | KC898234 | KC898217 | KX464866 |
Dothiorella parva | CBS 124721 | KX464123 | KX464615 | KX464867 |
Dothiorella plurivora | IRAN1557C | KC898225 | KC898208 | NA |
Dothiorella pretoriensis | CMW 36480 * | JQ239405 | JQ239392 | JQ239376 |
Dothiorella prunicola | CAP187 | EU673313 | EU673280 | EU673100 |
Dothiorella rhamni | MFLUCC 14-0902 * | KT240287 | MT592111 | MT592582 |
Dothiorella santali | MUCC 509 * | EF591924 | EF591975 | EF591958 |
Dothiorella sarmentorum | CBS 115038 | AY573206 | AY573223 | EU673101 |
Dothiorella sarmentorum | IMI 63581b * | AY573212 | AY573235 | NA |
Dothiorella sarmentorum | UESTCC 22.0076 | OQ190534 | NA | OQ275067 |
Dothiorella sarmentorum | UESTCC 22.0077 | OQ190535 | OQ241467 | OQ275068 |
Dothiorella sempervirentis | IRAN1581C | KC898237 | KC898219 | KX464885 |
Dothiorella sempervirentis | IRAN1583C | KC898236 | KC898220 | KX464884 |
Dothiorella striata | ICMP 16819 | EU673320 | EU673287 | EU673142 |
Dothiorella striata | DAR80992 * | KJ573643 | KJ573640 | NA |
Dothiorella symphoricarposicola | MFLUCC 13-0498 | KJ742379 | KJ742382 | NA |
Dothiorella symphoricarposicola | MFLUCC 13-0497 * | KJ742378 | KJ742381 | NA |
Dothiorella tectonae | MFLUCC12-0382 | KM396899 | KM409637 | KM510357 |
Dothiorella thailandica | MFLUCC 11-0438 * | NR_111794 | JX646861 | JX646844 |
Dothiorella thripsita | BRIP 51876 | KJ573642 | KJ573639 | KJ577550 |
Dothiorella uruguayensis | CBS 124908 * | NR_156208 | KX464886 | |
Dothiorella vidmadera | DAR 78992 * | EU768874 | EU768881 | HM800522 |
Dothiorella vidmadera | CBS 621.74 | KX464129 | KX464621 | KX464887 |
Dothiorella vidmadera | CBS 725.79 | KX464130 | KX464622 | KX464888 |
Dothiorella vidmadera | CFCC 71191 | PV264858 | PV268114 | PV339822 |
Dothiorella vidmadera | N282 | PV264859 | PV268115 | PV339823 |
Dothiorella vinea-gemmae | B116-3 * | KJ573644 | KJ573641 | KJ577552 |
Dothiorella viticola | WA10NO01 * | HM009376 | HM800511 | HM800519 |
Dothiorella viticola | WA10NO02 | HM009377 | HM800512 | HM800520 |
Dothiorella viticola | IRNBS28 | MN634039 | MN633993 | NA |
Dothiorella viticola | MFLUCC 22-0059 | ON707685 | ON720571 | ON677455 |
Dothiorella yunnana comb. nov. | CGMCC 3.18000 * | KX499644 | KX499650 | NA |
Dothiorella yunnana comb. nov. | CFCC 71177 | PV264860 | NA | PV339824 |
Dothiorella zanthoxyli | UESTCC 22.0083 | OQ190537 | OQ241469 | OQ275070 |
Dothiorella zanthoxyli | UESTCC 22.0084 | OQ190538 | OQ241470 | OQ275071 |
Dothiorella zanthoxyli | CGMCC 3.24159 * | OQ190536 | OQ241468 | OQ275069 |
Dothiorella zanthoxyli | N280 | PV264861 | NA | PV339825 |
Dothiorella zanthoxyli | N280B | PV264862 | NA | PV339826 |
Neofusicoccum luteum | CBS 562.92 * | KX464170 | KX464690 | KX464968 |
Neofusicoccum luteum | CMW 41365 | NR_147360 | KP860702 | KP860779 |
Species | Isolates | GenBank Accession Number | ||
---|---|---|---|---|
LSU | ITS | tef1 | ||
Alanphillipsia euphorbia | CBS 136411 * | KF777196 | KF777140 | MT592029 |
Phaeobotryon aplospora | CFCC 53774 | MN215871 | MN215836 | MN205996 |
Phaeobotryon aplospora | CFCC 53775 * | MN215872 | MN215837 | NA |
Phaeobotryon aplospora | CFCC 53776 | MN215873 | MN215838 | MN205997 |
Phaeobotryon caraganae | NEFU817 | NA | MH014076 | MH036714 |
Phaeobotryon caraganae | NEFU816 | NA | MF193891 | MF509765 |
Phaeobotryon cupressi | IRAN 1455C * | KX464539 | FJ919672 | FJ919661 |
Phaeobotryon cupressi | IRAN 1454C | KX464538 | FJ919673 | FJ919662 |
Phaeobotryon cupressi | IRAN 1445C | NA | KF766208 | KF766428 |
Phaeobotryon fraxini | CFCC 70762 * | PP177348 | PP188527 | NA |
Phaeobotryon fraxini | CFCC 70763 | PP177349 | PP188528 | NA |
Phaeobotryon juniperi | JU 001 * | OP941644 | OP941637 | OP948218 |
Phaeobotryon juniperi | JU 005 | OP941645 | OP941638 | OP948219 |
Phaeobotryon laricinum | CFCC 70804 | PP960198 | PP960188 | PQ046941 |
Phaeobotryon laricinum | CFCC 70805 * | PP960199 | PP960189 | PQ046942 |
Phaeobotryon laricinum | CFCC 70806 | PP960200 | PP960190 | PQ046943 |
Phaeobotryon longiparaphysium | CFCC 70807 * | PP960203 | PP960193 | PQ046946 |
Phaeobotryon longiparaphysium | CFCC 70808 | PP960204 | PP960194 | PQ046947 |
Phaeobotryon mali | XJAU 293001 | MW367101 | MW326854 | MW509519 |
Phaeobotryon mali | XJAU 277201 | MW367094 | MW326853 | MW509520 |
Phaeobotryon mali | XJAU 278201 | MW367092 | MW326852 | MW509516 |
Phaeobotryon mali | XJAU 309401 | MW367100 | MW326858 | MW509517 |
Phaeobotryon mali | XJAU 310001 | MW367093 | MW326878 | MW509518 |
Phaeobotryon mamane | CPC 12442 | DQ377899 | EU673333 | EU673299 |
Phaeobotryon mamane | CPC 12440 * | EU673248 | KF766209 | EU673298 |
Phaeobotryon mamane | CPC 12443 | EU673249 | EU673334 | EU673300 |
Phaeobotryon negundinis | CAA 797 | KU820971 | KX061513 | KX061507 |
Phaeobotryon negundinis | CAA 798 | NG_069332 | KX061514 | KX061508 |
Phaeobotryon platycladi | CFCC 58799 * | OQ652543 | OQ651172 | OQ692930 |
Phaeobotryon platycladi | CFCC 58800 | OQ652544 | OQ651173 | OQ692931 |
Phaeobotryon rhoinum | CFCC 52449 | MH133940 | MH133923 | MH133957 |
Phaeobotryon rhoinum | CFCC 52450 * | MH133941 | MH133924 | MH133958 |
Phaeobotryon rhoinum | CFCC 52451 | MH133942 | MH133925 | MH133959 |
Phaeobotryon rhoinum | XJAU 146801 | MW367102 | MW326857 | MW509522 |
Phaeobotryon rhoinum | XJAU 276401 | MW367095 | MW326855 | MW509524 |
Phaeobotryon rhoinum | XJAU 304901 | MW367096 | MW326856 | MW509523 |
Phaeobotryon rhoinum | XJAU 316801 | MW367097 | MW326877 | MW509521 |
Phaeobotryon rhois | CFCC 89662 * | KM030591 | KM030584 | KM030598 |
Phaeobotryon rhois | CFCC 89663 | KM030592 | KM030585 | KM030599 |
Phaeobotryon spiraeae | CFCC 53925 * | OM049432 | OM049420 | NA |
Phaeobotryon spiraeae | CFCC 53926 | OM049433 | OM049421 | NA |
Phaeobotryon ulmi | CBS 138854 * | MT587321 | MT587540 | MT592274 |
Phaeobotryon ulmi | CBS 123.30 | DQ377861 | KX464232 | KX464766 |
Phaeobotryon xizangense sp. nov. | CFCC 71501 * | PV264865 | PV264863 | PV268116 |
Phaeobotryon xizangense sp. nov. | LZ204 * | PV264866 | PV264864 | PV268117 |
Oblongocollomyces variabilis | CBS 121774 * | KX464536 | NR_136994 | EU101357 |
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Share and Cite
Zhou, J.; Li, A.; Jiang, N. Morphology and Phylogeny Reveal New Species and Records of Diplodia, Dothiorella, and Phaeobotryon Associated with Tree Cankers in Xizang, China. J. Fungi 2025, 11, 331. https://doi.org/10.3390/jof11050331
Zhou J, Li A, Jiang N. Morphology and Phylogeny Reveal New Species and Records of Diplodia, Dothiorella, and Phaeobotryon Associated with Tree Cankers in Xizang, China. Journal of Fungi. 2025; 11(5):331. https://doi.org/10.3390/jof11050331
Chicago/Turabian StyleZhou, Jia, Aining Li, and Ning Jiang. 2025. "Morphology and Phylogeny Reveal New Species and Records of Diplodia, Dothiorella, and Phaeobotryon Associated with Tree Cankers in Xizang, China" Journal of Fungi 11, no. 5: 331. https://doi.org/10.3390/jof11050331
APA StyleZhou, J., Li, A., & Jiang, N. (2025). Morphology and Phylogeny Reveal New Species and Records of Diplodia, Dothiorella, and Phaeobotryon Associated with Tree Cankers in Xizang, China. Journal of Fungi, 11(5), 331. https://doi.org/10.3390/jof11050331