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Article

Morphology and Phylogeny Reveal New Species and Records of Diplodia, Dothiorella, and Phaeobotryon Associated with Tree Cankers in Xizang, China

1
Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, China
2
Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
*
Authors to whom correspondence should be addressed.
J. Fungi 2025, 11(5), 331; https://doi.org/10.3390/jof11050331
Submission received: 11 March 2025 / Revised: 7 April 2025 / Accepted: 21 April 2025 / Published: 22 April 2025
(This article belongs to the Special Issue Advanced Research of Ascomycota)

Abstract

:
The fungal family Botryosphaeriaceae, which includes genera such as Diplodia, Dothiorella, and Phaeobotryon, comprises species commonly associated with woody plants such as endophytes, pathogens, and saprophytes. The Xizang Autonomous Region of China, known for its rich forest resources, harbors significant fungal diversity. However, limited research has been conducted on plant-disease-associated fungi in this region. In this study, we employed morphological characteristics and molecular phylogenetic analyses of the internal transcribed spacer region of rDNA (ITS), the ribosomal large subunit (LSU), the translation elongation factor 1-alpha (tef1) gene, and the partial beta-tubulin (tub2) gene to identify fungal species. As a result, two new species, Diplodia salicicola sp. nov. and Phaeobotryon xizangense sp. nov., are proposed and described herein. Additionally, Di. corticola, Di. mutila, Do. acericola, Do. magnoliae, Do. vidmadera, Do. yunnana comb. nov., and Do. zanthoxyli are reported for the first time in Xizang. Our findings contribute to advancing the knowledge of fungal biodiversity in Xizang’s high-altitude ecosystems.

1. Introduction

Fungi play a significant role in forest ecosystems and are closely associated with forest health, often causing various diseases including canker, leaf spots, fruit rot, and other ailments [1,2,3,4,5,6,7,8]. Members of the Botryosphaeriales usually inhabit tree hosts, existing as endophytes, saprophytes, or pathogens [9,10,11,12,13,14]. For instance, Aplosporella prunicola, Botryosphaeria dothidea, and Phyllosticta capitalensis are known to cause leaf spots on Castanea mollissima [15]; Melanops chinensis is linked to oak canker disease [16]; and Lasiodiplodia cinnamomi is responsible for branch canker in Cinnamomum camphora [17].
The fungal order Botryosphaeriales was initially established to encompass a single family, Botryosphaeriaceae [18]. However, recent studies have significantly expanded our understanding of this order, leading to the discovery of new families, genera, and species [19,20,21,22,23,24]. Currently, six phylogenetically distinct lineages, representing six families, are widely recognized within Botryosphaeriales: Aplosporellaceae, Botryosphaeriaceae, Melanopsaceae, Phyllostictaceae, Planistromellaceae, and Saccharataceae [21,24]. Among these, Botryosphaeriaceae is the most diverse, comprising the majority of genera and species, whereas Melanopsaceae is the least diverse, containing only a single genus with a limited number of species [16,25,26,27,28,29,30,31].
Diplodia is known to produce two distinct types of conidia. In type 1, the conidia are initially hyaline and aseptate but gradually transition to pale or dark brown and develop one or several septa as they mature. In contrast, conidia of type 2 become pigmented early in their development and rarely form septa [22,24,29]. Due to the overlapping morphological characteristics among species, molecular phylogenetic analysis is essential for accurate species identification within this genus [32,33,34].
Dothiorella has undergone significant conceptual changes over time [29]. Currently, it is recognized as a distinct lineage within the family Botryosphaeriaceae [19,20,21,29,35,36]. Species identification of Dothiorella and the other botryosphaeriaceous genera primarily relies on anamorphic and cultural characteristics, supplemented by molecular phylogenetic analysis, due to the rarity of their teleomorphic stages [35,36,37,38,39].
Phaeobotryon was established to accommodate the species previously known as Dothidea cercidis, now classified as Phaeobotryon cercidis [40]. This genus is characterized by its distinctive 2-septate, brown ascospores, which exhibit conical, apiculate-elliptic to oblong or obovoid shapes at both ends, along with hyaline or brown conidia [29,41,42,43,44,45]. Recently, several additional species have been incorporated into this genus based on a combination of morphological characteristics and molecular phylogenetic evidence [41,42,43,44,45].
In the present study, symptoms of Botryosphaeriaceae-associated canker were observed on various tree hosts in Xizang, China. The objectives of this study were to identify the fungi from the diseased branches and to describe and characterize new species using a combination of molecular and morphological approaches.

2. Materials and Methods

2.1. Specimens and Strains

In the summer of 2024, field investigations were carried out in the southeastern regions of Xizang to collect fungi from virgin forests. During the sampling process, tree branches and twigs exhibiting conspicuous fungal fruiting bodies were carefully selected. These branches were then cut into 15 cm segments, systematically packaged in paper bags, and subsequently transported to the laboratory for comprehensive analysis and further research.
Using sterile surgical blades, fungal fruiting bodies were carefully dissected, and spore masses were aseptically transferred onto the surface of potato dextrose agar (PDA) medium (containing 200 g potato infusion, 20 g glucose, 20 g agar, and distilled water to make 1000 mL final volume) with sterilized inoculation needles. The inoculated Petri dishes were maintained at 25 °C under complete darkness to facilitate spore germination. Voucher specimens were deposited in the Herbarium of the Chinese Academy of Forestry (CAF), while the pure cultures were preserved in the China Forestry Culture Collection Center (CFCC) for long-term storage and future reference.

2.2. Morphological Observations

Comprehensive morphological characterization was performed based on the examination of naturally developed fungal conidiomata on host twigs and branches. The fruiting bodies were meticulously sectioned using sterile surgical blades and subsequently documented using a Zeiss Discovery V8 stereomicroscope (Carl Zeiss AG, Jena, Germany) equipped with a digital imaging system. Detailed microscopic examination was conducted using an Olympus BX51 compound microscope (Olympus Corporation, Tokyo, Japan) equipped with a camera Axiocam 208 color and and ZEN lite Software (https://www.zeiss.com/microscopy/en/products/software/zeiss-zen-lite.html, accessed on 5 August 2024) to analyze and photograph critical taxonomic features, including conidiophores, conidiogenous cells, and conidia. For quantitative analysis, fifty conidia were randomly selected and measured to determine their dimensional characteristics.

2.3. DNA Extraction and Amplification

Genomic DNA was extracted from fungal colonies cultivated on PDA plates using the cetyltrimethylammonium bromide (CTAB) method [46]. For isolates belonging to Diplodia and Dothiorella, three genomic regions were amplified: the internal transcribed spacer region of ribosomal DNA (ITS), the translation elongation factor 1-alpha (tef1) gene, and the partial beta-tubulin (tub2) gene. For Phaeobotryon isolates, the ITS region, the large subunit ribosomal RNA gene (LSU), and the tef1 gene were targeted. PCR amplification was performed using the following primer pairs: ITS1/ITS4 for ITS, LR0R/LR5 for LSU, EF1-728F/EF1-986R for tef1, and Bt2a/Bt2b for tub2 [47,48,49,50]. The thermal cycling conditions consisted of an initial denaturation at 94 °C for 5 min, followed by 35 cycles of denaturation at 94 °C for 30 s, annealing at 52 °C (for ITS and LSU) or 54 °C (for tef1 and tub2) for 50 s, and extension at 72 °C for 1 min, with a final elongation step at 72 °C for 7 min. Purified PCR products were sequenced bidirectionally by Sangon Biotech Co., Ltd. (Beijing, China).

2.4. Molecular Phylogeny

The obtained sequences were initially identified through BLASTn searches against the NCBI GenBank database to verify their taxonomic classification. Reference sequences of Diplodia, Dothiorella, and Phaeobotryon were retrieved from recent publications (Table 1, Table 2 and Table 3) and downloaded from GenBank. For each genus, individual loci (ITS, LSU, tef1, and tub2) were aligned using MAFFT v. 6.0 and manually refined in MEGA v. 6.0. [51,52]. Subsequently, concatenated datasets were prepared: ITS, tef1, and tub2 for Diplodia and Dothiorella, and ITS, LSU, and tef1 for Phaeobotryon. Phylogenetic analyses were conducted using both maximum likelihood (ML) and Bayesian inference (BI) approaches through the CIPRES Science Gateway platform [53,54,55]. The general time reversible (GTR) model with gamma-distributed rate variation was selected as the optimal substitution model. For ML analysis, nodal support was assessed with 1000 bootstrap replicates. Bayesian analysis was performed with four independent Markov Chain Monte Carlo (MCMC) runs of 1,000,000 generations each, sampling every 1000 generations. The first 25% of trees were discarded as burn-in, and the remaining trees were used to construct a 50% majority-rule consensus tree. Phylogenetic trees were visualized and annotated using FigTree v. 1.4.4, with final graphical editing performed in Adobe Illustrator 2020.

3. Results

3.1. Phylogeny

In the phylogenetic analysis of Diplodia, a combined dataset comprising ITS, tef1, and tub2 sequences from 68 strains was utilized. The final alignment spanned 1302 characters, distributed as follows: 568 characters from ITS, 303 from tef1, and 431 from tub2. The maximum likelihood (ML) optimization of the best RAxML tree yielded a likelihood value of −6096.16. The alignment matrix contained 540 distinct patterns, with 13.49% of the characters being undetermined or gaps. The estimated base frequencies were A = 0.204491, C = 0.308989, G = 0.259443, and T = 0.227077. The substitution rates were AC = 0.839353, AG = 2.834662, AT = 0.813846, CG = 0.921389, CT = 4.425100, and GT = 1.0. The gamma distribution shape parameter (α) was 0.257468. The topology of the phylogenetic tree constructed in this study was highly consistent with those reported in previous publications. Both RAxML and Bayesian analyses produced congruent topologies for the isolates examined. Specifically, isolates CFCC 71412 and LZ100 formed a distinct clade closely related to Diplodia fici-septicae and D. pipa, supported by high bootstrap (BS = 100) and Bayesian posterior probability (BPP = 1) values. Isolate CFCC 71471 clustered with strains of D. mutila, while isolates CFCC 71193 and N183 formed a clade with strains of D. corticola (Figure 1). Based on these findings, five Diplodia isolates from this study were identified as D. salicicola sp. nov., D. mutila, and D. corticola.
In the phylogenetic analysis of Dothiorella, a combined dataset comprising ITS, tef1, and tub2 sequences from 78 strains was utilized. The final alignment spanned 1384 characters, distributed as follows: 661 characters from ITS, 294 from tef1, and 429 from tub2. The maximum likelihood (ML) optimization of the best RAxML tree yielded a likelihood value of −8608.95. The alignment matrix contained 661 distinct patterns, with 24.09% of the characters being undetermined or gaps. The estimated base frequencies were A = 0.210908, C = 0.305139, G = 0.251287, and T = 0.232666. The substitution rates were AC = 0.875931, AG = 2.225085, AT = 1.052270, CG = 0.978866, CT = 3.644353, and GT = 1.0. The gamma distribution shape parameter (α) was 0.250867. The topology of the phylogenetic tree constructed in this study was consistent with those reported in previous publications. Both RAxML and Bayesian analyses produced congruent topologies for the isolates examined. Based on the phylogeny (Figure 2), eight Dothiorella isolates from this study were identified as Do. acericola, Do. yunnana, Do. magnoliae, Do. Vidmadera, and Do. zanthoxyli.
In the phylogenetic analysis of Phaeobotryon, a combined dataset comprising ITS, LSU, and tef1 sequences from 43 strains was utilized. The final alignment spanned 1891 characters, distributed as follows: 559 characters from ITS, 785 from LSU, and 547 from tef1. The maximum likelihood (ML) optimization of the best RAxML tree yielded a likelihood value of −5235.17. The alignment matrix contained 379 distinct patterns, with 18.78% of the characters being undetermined or gaps. The estimated base frequencies were A = 0.232859, C = 0.255406, G = 0.284479, and T = 0.227256. The substitution rates were AC = 0.942249, AG = 3.001570, AT = 0.626571, CG = 1.509093, CT = 5.496302, and GT = 1.0. The gamma distribution shape parameter (α) was 0.257468. The topology of the phylogenetic tree constructed in this study was highly consistent with those reported in previous publications. Both RAxML and Bayesian analyses produced congruent topologies for the isolates examined. Two isolates from the present study clustered into a separate clade from the other known species, named as Phaeobotryon xizangense sp. nov (Figure 3).

3.2. Taxonomy

Diplodia corticola A.J.L. Phillips, A. Alves & J. Luque, in Alves, Correia, Luque & Phillips, Mycologia 96(3): 603 (2004)
Materials examined: CHINA, Xizang Autonomous Region, Linzhi City, Gongbujiangda County, Gongbujiangda Town, Apeixin Village, on cankered twigs and branches of Prunus mira, 7 July 2024, Ning Jiang, Jiangrong Li, Jieting Li & Liangna Guo (cultures CFCC 71193, N183).
Notes: Diplodia corticola is recognized as a pathogen affecting Quercus spp. in Europe and the USA, and it has also been reported to inhabit Eucalyptus globulus and Pinus pinaster [32,37]. In this study, two isolates obtained from Prunus mira in China were identified as D. corticola based on molecular evidence (Figure 1). This finding expands the known host range and geographic distribution of D. corticola.
Diplodia mutila (Fr.) Fr., Annls Sci. Nat., Bot., sér. 2 1: 349 (1834)
Materials examined: CHINA, Xizang Autonomous Region, Linzhi City, Bomi County, on cankered branches of Prunus armeniaca, 24 October 2024, Ning Jiang, Min Liu, Jieting Li & Yi Li (culture CFCC 71473).
Notes: Diplodia mutila is associated with a diverse range of woody hosts globally, including species of Malus, Quercus, Vitis, and others [31,33]. In this study, we isolated a new strain of D. mutila from Prunus armeniaca, which were confidently identified through molecular data (Figure 1).
Diplodia salicicola Ning Jiang, sp. nov.
MycoBank: MB858270
Etymology: Named after the host genus, Salix and “cola” = inhabiting.
Description: Conidiomata pycnidial, scattered, subglobose to globose, semi-immersed to erumpent, unilocular, 250–450 μm diam. Disc brown to black, 100–200 μm in diam. Ostioles single, central, papillate, 20–45 μm. Paraphyses present, hyaline, thin-walled, arising from the conidiogenous layer, extending above the level of developing conidia, tip rounded, aseptate, up to 72 × 2 μm. Conidiophores reduced to conidiogenous cells. Conidiogenous cells hyaline, smooth, thin-walled, cylindrical, holoblastic, phialidic, proliferating internally with visible periclinal thickening, (9.5–)11.5–25.5(–37) × (2.5–)3–4.5(–6) μm. Conidia initially hyaline, becoming brown with age, oval to cylindrical, smooth with granular contents, guttulate, both ends broadly rounded, aseptate, (26.5–)27.5–29(–29.5) × (10–)11–13(–13.5) μm.
Culture characteristics: Colonies on PDA flat, spreading, with flocculent mycelium and even edges, initially white to grey, becoming brown after 10 d, reaching a 90 mm diameter after 10 days at 25 °C in the dark.
Materials examined: CHINA, Xizang Autonomous Region, Linzhi City, Chayu County, on cankered twigs and branches of Salix takasagoalpina, 22 October 2024, Ning Jiang, Min Liu, Jieting Li & Yi Li (holotype CAF800143); ex-type cultures CFCC 71412, LZ100.
Notes: Diplodia salicicola, isolated from Salix takasagoalpina in Xizang, is phylogenetically closely related to D. fici-septicae from Ficus septica in Taiwan and D. pipa from Eriobotrya japonica in Yunnan (Figure 1). Although all three species were discovered in China, they exhibit distinct morphological and molecular characteristics. Morphologically, D. salicicola can be distinguished from D. fici-septicae by its longer conidiogenous cells (11.5–25.5 × 3–4.5 μm in D. salicicola vs. 4–7 × 3–5 μm in D. fici-septicae), and from D. pipa by its aseptate mature conidia. Additionally, D. salicicola differs from D. fici-septicae and D. pipa at the molecular level, with sequence differences of 1/545 bp in ITS and 18/315 bp in tef1 compared to D. fici-septicae and 4/545 bp in ITS, 16/315 bp in tef1, and 2/404 bp in tub2 compared to D. pipa [34,43].
Figure 4. Morphology of Diplodia salicicola from Salix takasagoalpina. (A,B) Conidiomata formed on branches. (C) Transverse section through a conidioma. (D) Longitudinal section of a conidioma. (EG) Conidiogenous cells with attached conidia. (H) Conidia. Scale bars: (B) = 500 μm; (C,D) = 300 μm; (EH) = 20 μm.
Figure 4. Morphology of Diplodia salicicola from Salix takasagoalpina. (A,B) Conidiomata formed on branches. (C) Transverse section through a conidioma. (D) Longitudinal section of a conidioma. (EG) Conidiogenous cells with attached conidia. (H) Conidia. Scale bars: (B) = 500 μm; (C,D) = 300 μm; (EH) = 20 μm.
Jof 11 00331 g004
Dothiorella acericola Phookamsak, Tennakoon & K.D. Hyde, Fungal Diversity 95: 78 (2019)
Materials examined: CHINA, Xizang Autonomous Region, Linzhi City, Bomi County, Yigong Town, on dead branches of an unknown host, 25 October 2024, Ning Jiang, Min Liu, Jieting Li & Yi Li (cultures CFCC 71537, N593).
Notes: Dothiorella acericola was first identified on dead hanging twigs of Acer palmatum in Yunnan Province, China, and was later reported to be associated with branch cankers of Ziziphus jujuba in Beijing [56,57]. In the present study, we report, for the first time, the occurrence of this fungal species on dead branches in Xizang Autonomous Region, thereby expanding its known geographical distribution.
Dothiorella magnoliae C.M. Tian & C.J. You, Mycosphere 8(2): 1035 (2017)
Materials examined: CHINA, Xizang Autonomous Region, Linzhi City, Bayi District, on cankered branches of Albizia julibrissin, 8 July 2024, Ning Jiang, Jieting Li, Yi Li & Ji Qiang (culture CFCC 71215).
Notes: Dothiorella magnoliae was originally described based on two strains isolated from Magnolia grandiflora in Sichuan Province, China [39]. In the present study, we report the first isolation of this fungal species from Albizia julibrissin, representing a new host record for this pathogen.
Dothiorella vidmadera W.M. Pitt, Úrbez-Torr. & Trouillas, Fungal Diversity 61(1): 216 (2013)
Materials examined: CHINA, Xizang Autonomous Region, Linzhi City, Bomi County, Yigong Town, on cankered branches of Chaenomeles cathayensis, 10 July 2024, Ning Jiang, Jieting Li & Haoyin Zhang (cultures CFCC 71191, N282).
Notes: Dothiorella vidmadera was originally reported as a pathogen associated with grapevines (Vitis vinifera) in Australia [38]. In the present study, we identified two strains isolated from Chaenomeles cathayensis in Xizang Autonomous Region, China, as D. vidmadera, representing both a new host association and a significant expansion of its known geographical distribution.
Dothiorella yunnana (Y. Zhang ter & Min Zhang) Ning Jiang, comb. nov.
MycoBank: MB858272
Basionym: Spencermartinsia yunnana Y. Zhang ter & Min Zhang, Mycosphere 7(7): 1060 (2016)
Materials examined: CHINA, Xizang Autonomous Region, Linzhi City, Lang County, on cankered branches of Rosa chinensis, 5 July 2024, Ning Jiang, Jiangrong Li, Jieting Li & Liangna Guo (culture CFCC 71177).
Notes: The genus Dothiorella was resurrected to accommodate species characterized by conidia that become pigmented while still attached to their conidiogenous cells [30]. Concurrently, the genus Spencermartinsia was established to include Dothiorella-like species exhibiting apiculate ascospores [58]. However, molecular phylogenetic evidence has demonstrated that the presence of apiculate ascospores within the Botryosphaeriales is not a reliable taxonomic character for generic delineation [59]. Spencermartinsia yunnana was originally described from multiple hosts, including Acer buergerianum, Camellia sp., Poncirus trifoliata, and Ternstroemia gymnanthera, with its taxonomic status validated through the designation of a holotype [36,60]. In the present study, based on comprehensive phylogenetic analyses, we further confirm that Spencermartinsia should be treated as a synonym of Dothiorella. Consequently, Spencermartinsia yunnana is formally transferred to Dothiorella as Do. yunnana.
Dothiorella zanthoxyli L.W. Li & Jian K. Liu, MycoKeys 97: 98 (2023)
Materials examined: CHINA, Xizang Autonomous Region, Linzhi City, Bomi County, Yigong Town, on cankered branches of Diospyros lotus, 10 July 2024, Ning Jiang, Jieting Li & Haoyin Zhang (cultures CFCC 71191, N282).
Notes: Dothiorella zanthoxyli was recently described as a species isolated from decaying branches of Zanthoxylum bungeanum in Sichuan, China [41]. In this study, we identified two strains obtained from cankered branches of Diospyros lotus in Xizang, China, as Do. zanthoxyli based on molecular phylogeny (Figure 2). This finding represents the first report of Do. zanthoxyli on Diospyros lotus, thereby establishing it as a new host for this fungal species.
Phaeobotryon xizangense Ning Jiang, sp. nov.
MycoBank: MB858271
Etymology: Named after the collection site of the holotype, Xizang Autonomous Region.
Description: Conidiomata pycnidial, scattered, subglobose to globose, semi-immersed to erumpent, unilocular, and 400–650 μm diam. Disc black, 200–400 μm in diam. Ostioles single, central, papillate, and 85–190 μm. Paraphyses present, hyaline, thin-walled, arising from the conidiogenous layer, extending above the level of developing conidia, tip rounded, aseptate, and up to 58 × 3.5 μm. Conidiophores reduced to conidiogenous cells. Conidiogenous cells hyaline, smooth, thin-walled, cylindrical, holoblastic, phialidic, and proliferating internally with visible periclinal thickening, (10–)12.5–21.5(–25) × (2.5–)3–4.5(–5.5) μm. Conidia initially hyaline, becoming brown with age, oval to cylindrical, smooth with granular contents, guttulate, both ends broadly rounded, initially aseptate, and becoming 1-septate, (25–)26.5–30(–32.5) × (11.5–)13–15.5(–16) μm.
Culture characteristics: Colonies on PDA flat, spreading, with flocculent mycelium and even edges, initially white, becoming brown to black after 10 d, and reaching a 90 mm diameter after 10 days at 25 °C in the dark.
Materials examined: CHINA, Xizang Autonomous Region, Linzhi City, Bomi County, Yigong Town, on cankered twigs and branches of Platycladus orientalis, 25 October 2024, Ning Jiang, Min Liu, Jieting Li & Yi Li (holotype CAF800144); ex-type cultures CFCC 71501, LZ204.
Notes: In the phylogram (Figure 3), Phaeobotryon xizangense from Xizang, China, clusters closely with P. platycladi from Beijing, China. Despite both species sharing the same host, Platycladus orientalis, they can be readily distinguished by their conidial dimensions: P. xizangense exhibits conidia measuring 26.5–30 × 13–15.5 μm, whereas P. platycladi has conidia of a different size 23–31 × 9.5–12.5 μm. In addition, P. xizangense differs from P. platycladi in sequence data (4/463 bp in ITS, 1/556 bp in LSU, 22/312 bp in tef1) [42].
Figure 5. Morphology of Phaeobotryon xizangense from Platycladus orientalis. (A,B) Conidiomata formed on branches. (C) Transverse section through the conidiomata. (D) Longitudinal section of the conidiomata. (EG) Conidiogenous cells with attached conidia. (H) Conidia. Scale bars: (BD) = 500 μm; (EH) = 20 μm.
Figure 5. Morphology of Phaeobotryon xizangense from Platycladus orientalis. (A,B) Conidiomata formed on branches. (C) Transverse section through the conidiomata. (D) Longitudinal section of the conidiomata. (EG) Conidiogenous cells with attached conidia. (H) Conidia. Scale bars: (BD) = 500 μm; (EH) = 20 μm.
Jof 11 00331 g005

4. Discussion

In this study, species belonging to the genera Diplodia, Dothiorella, and Phaeobotryon were investigated in Xizang, a region known for its rich fungal diversity but which is largely understudied. Using an integrative taxonomic approach that combines morphological characterization and molecular phylogeny, several species were identified, including Diplodia corticola, Di. mutila, Di. salicicola sp. nov., Do. acericola, Do. magnoliae, Do. vidmadera, Do. yunnana comb. nov., Do. zanthoxyli, and Phaeobotryon xizangense sp. nov., isolated from various tree hosts. These findings substantially advance our understanding of fungal species diversity of Botryosphaeriales and their host associations and distribution patterns.
Members of Botryosphaeriales are widely recognized as plant pathogens, yet the ecological roles of many species remain unconfirmed due to a lack of pathogenicity testing [61,62,63]. A similar situation arises in this study, where most identified species were found in association with canker symptoms. However, due to insufficient host materials, conducting rigorous pathogenicity tests proved challenging. Given the ecological and economic significance of botryosphaerialean fungi, increased funding and research attention should be directed toward these fungi and their associated diseases. Such efforts would not only advance fungal taxonomy but also contribute to the understanding and management of forest health.
Generic boundaries within Botryosphaeriales are often morphologically ambiguous [14,19,20,21]. A notable example is the previous placement of several Dothiorella species into Spencermartinsia based on the presence of apiculate ascospores [30,58,59]. However, this characteristic was later determined to be unreliable for genus delineation, leading to the synonymization of Spencermartinsia with Dothiorella, as supported by multigene phylogenetic analyses [36,59,60]. In this study, we reclassify Spencermartinsia yunnana as Dothiorella yunnana to clarify the taxonomic boundaries within the genus Dothiorella.
Septation and pigmentation are not consistently reliable diagnostic features within Botryosphaeriales [29,64]. For instance, in the genus Diplodia, some species, such as Di. salicicola, produce aseptate and pigmented conidia, while others, like Di. afrocarpi, initially form hyaline and aseptate conidia that later transition to dark brown and develop a septum as they mature [64]. Despite this variability in septation and pigmentation, these species form a strongly supported monophyletic lineage within Botryosphaeriales [21,24]. Therefore, future studies incorporating broader collections and additional data are essential to refine the classification of genera within Botryosphaeriaceae and to establish more robust taxonomic boundaries.

Author Contributions

Conceptualization, J.Z. and A.L.; methodology, N.J.; software, N.J.; validation, J.Z. and A.L.; formal analysis, J.Z.; investigation, J.Z. and A.L.; resources, J.Z. and A.L.; data curation, J.Z. and A.L.; writing—original draft preparation, J.Z., A.L. and N.J.; writing—review and editing, J.Z.; visualization, N.J.; supervision, J.Z.; project administration, N.J.; funding acquisition, N.J. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by Lasa Science and Technology Plan Project (LSKJ202437-2) and National Microbial Resource Center of the Ministry of Science and Technology of the People’s Republic of China (NMRC-2024-7).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

All sequence data are available in NCBI GenBank (Table 1, Table 2 and Table 3).

Conflicts of Interest

The authors declare no conflicts of interest.

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Figure 1. Phylogram of Diplodia resulting from a maximum likelihood analysis based on the combined dataset of ITS, tef1, and tub2. Numbers above the branches indicate ML bootstraps (left, ML BS ≥ 50%) and Bayesian Posterior Probabilities (right, BPP ≥ 0.90). The tree is rooted with Botryosphaeria dothidea (CBS 115476) and Dothiorella dulcispinae (CBS 130413 and CMW 36462). The ex-type strains are indicated by an asterisk (*), and strains from the present study are in black bold.
Figure 1. Phylogram of Diplodia resulting from a maximum likelihood analysis based on the combined dataset of ITS, tef1, and tub2. Numbers above the branches indicate ML bootstraps (left, ML BS ≥ 50%) and Bayesian Posterior Probabilities (right, BPP ≥ 0.90). The tree is rooted with Botryosphaeria dothidea (CBS 115476) and Dothiorella dulcispinae (CBS 130413 and CMW 36462). The ex-type strains are indicated by an asterisk (*), and strains from the present study are in black bold.
Jof 11 00331 g001
Figure 2. Phylogram of Dothiorella resulting from a maximum likelihood analysis based on the combined dataset of ITS, tef1, and tub2. Numbers above the branches indicate ML bootstraps (left, ML BS ≥ 50%) and Bayesian Posterior Probabilities (right, BPP ≥ 0.90). The tree is rooted with Neofusicoccum luteum (CBS 562.92 and CMW 41365). The ex-type strains are indicated by an asterisk (*), and strains from the present study are in black bold.
Figure 2. Phylogram of Dothiorella resulting from a maximum likelihood analysis based on the combined dataset of ITS, tef1, and tub2. Numbers above the branches indicate ML bootstraps (left, ML BS ≥ 50%) and Bayesian Posterior Probabilities (right, BPP ≥ 0.90). The tree is rooted with Neofusicoccum luteum (CBS 562.92 and CMW 41365). The ex-type strains are indicated by an asterisk (*), and strains from the present study are in black bold.
Jof 11 00331 g002aJof 11 00331 g002b
Figure 3. Phylogram of Phaeobotryon resulting from a maximum likelihood analysis based on the combined dataset of ITS, tef1, and tub2. Numbers above the branches indicate ML bootstraps (left, ML BS ≥ 50%) and Bayesian Posterior Probabilities (right, BPP ≥ 0.90). The tree is rooted with Alanphillipsia euphorbia (CBS 136411) and Oblongocollomyces variabilis (CBS 121774). The ex-type strains are indicated by an asterisk (*), and strains from the present study are in black bold.
Figure 3. Phylogram of Phaeobotryon resulting from a maximum likelihood analysis based on the combined dataset of ITS, tef1, and tub2. Numbers above the branches indicate ML bootstraps (left, ML BS ≥ 50%) and Bayesian Posterior Probabilities (right, BPP ≥ 0.90). The tree is rooted with Alanphillipsia euphorbia (CBS 136411) and Oblongocollomyces variabilis (CBS 121774). The ex-type strains are indicated by an asterisk (*), and strains from the present study are in black bold.
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Table 1. Isolates and GenBank accession numbers used in the genus Diplodia.
Table 1. Isolates and GenBank accession numbers used in the genus Diplodia.
SpeciesIsolatesGenBank Accession Number
ITStef1tub2
Botryosphaeria dothideaCBS 115476 *AY236949AY236898AY236927
Diplodia acerigenaCGMCC 3.24157OQ190518OQ241452NA
Diplodia acerigenaUESTCC 22.0074OQ190519OQ241453OQ338163
Diplodia acerigenaUESTCC 22.0075OQ190520OQ241454OQ338164
Diplodia africanaCBS 120835 *KF766155KF766397KF766129
Diplodia africanaSTE-U 5946EF445344EF445383NA
Diplodia afrocarpiCBS 131681 *MT587333MT592035MT592471
Diplodia agrifoliaCBS 124.30KX464087KX464557KX464783
Diplodia alanphillipsiiIRAN 1508CKF890208KF890190NA
Diplodia alanphillipsiiIRAN 1509CKF890209KF890191NA
Diplodia alanphillipsiiIRAN 1574CMT258875MT270153NA
Diplodia allocellulaCBS 130408 *JQ239397JQ239384JQ239378
Diplodia allocellulaCMW 36470JQ239399JQ239386JQ239380
Diplodia arengaeMFLU 17-2769 *MG762771MG762774MG783039
Diplodia bulgaricaCBS 124254 GQ923853GQ923821NA
Diplodia bulgaricaCBS 124135 *GQ923852GQ923820NA
Diplodia citricarpaCBS 124715 *KF890207KF890189KX464784
Diplodia corticolaCBS 112549 *AY259100AY573227DQ458853
Diplodia corticolaCBS 112546AY259090EU673310EU673117
Diplodia corticolaCFCC 71193PV264850NAPV339814
Diplodia corticolaN183PV264851NAPV339815
Diplodia crataegicolaMFLU 15-1311 *KT290244KT290248KT290246
Diplodia cupressiCBS 168.87 *DQ458893DQ458878DQ458861
Diplodia cupressiCBS 261.85DQ458894DQ458879DQ458862
Diplodia eriobotryicolaCBS 140851 *KT240355KT240193MG015806
Diplodia estuarinaCMW 41363KP860829KP860674KP860752
Diplodia estuarinaCMW 41230KP860830KP860675KP860753
Diplodia fici-septicaeMFLUCC 20-0037MW063180MW183802NA
Diplodia fici-septicaeNCYUCC 19-0007MW063181MW183803NA
Diplodia fraxiniCBS 136010 *KF307700KF318747MG015807
Diplodia fraxiniCBS 136011KF307711KF318748MG015808
Diplodia galiicolaMFLU15-1310 *KT290245KT290249MT592471
Diplodia gallaeCBS 211.25KX464090KX464564KX464795
Diplodia gallaeCBS 212.25KX464091KX464565KX464796
Diplodia malorumCBS 124130 *GQ923865GQ923833NA
Diplodia malorumBN-37KT240360KT240198NA
Diplodia mutilaCBS 112553 *AY259093AY573219KY554743
Diplodia mutilaUESTCC 22.0064OQ190521OQ241455OQ338165
Diplodia mutilaUESTCC 22.0065OQ190522OQ241456OQ338166
Diplodia mutilaUESTCC 22.0069OQ190523OQ241457OQ338167
Diplodia mutilaUESTCC 22.0068OQ190524OQ241458OQ338168
Diplodia mutilaUESTCC 22.0067OQ190525OQ241459OQ338169
Diplodia mutilaUESTCC 22.0063OQ190526OQ241460OQ338170
Diplodia mutilaCFCC 71473PV264852PV268109PV339816
Diplodia neojuniperiCPC 22753 *KM006431KM006462NA
Diplodia neojuniperiCPC 22754KM006432KM006463NA
Diplodia olivarumCBS 121887 *EU392302EU392279HQ660079
Diplodia olivarumIMI 390972HM028640HQ660078HQ660080
Diplodia parvaKNU16-007 *LC417238LC435495LC522938
Diplodia pipaCGMCC 3.27062 *PP192032PP197939PP197952
Diplodia pistaciicolaCGMCC 3.24156OQ190527OQ241461OQ338171
Diplodia pistaciicolaUESTCC 22.0071OQ190528OQ241462OQ275062
Diplodia pseudoseriataCBS 124906 *EU080927EU863181MG015820
Diplodia quercivoraCBS 133852 *JX894205JX894229MG015821
Diplodia quercivoraMEAN 1017KU311198KU311201NA
Diplodia rosulataCBS 116470 *EU430265EU430267EU673132
Diplodia rosulataCBS 116472EU430266EU430268EU673131
Diplodia salicicola sp. nov.CFCC 71412 *PV264853PV268110PV339817
Diplodia salicicola sp. nov.LZ100 *PV264854PV268111PV339818
Diplodia sapineaCBS 393.84 *DQ458895DQ458880DQ458863
Diplodia sapineaCBS 109726KX464094KX464568KX464800
Diplodia scrobiculataCBS 118110 *AY253292AY624253AY624258
Diplodia seriataCBS 112555 *AY259094AY573220DQ458856
Diplodia subglobosaCBS 124133 *GQ923856GQ923824MT592576
Diplodia subglobosaCBS 124132DQ458887DQ458871DQ458852
Diplodia tsugaeCBS 418.64 *DQ458888DQ458873DQ458855
Dothiorella dulcispinaeCBS 130413JQ239400JQ239387JQ239373
Dothiorella dulcispinaeCMW 36462JQ239402JQ239389JQ239375
Note: NA, not applicable. Ex-type strains are marked with *, and strains from present study are in black bold.
Table 2. Isolates and GenBank accession numbers used in the genus Dothiorella.
Table 2. Isolates and GenBank accession numbers used in the genus Dothiorella.
SpeciesIsolatesGenBank Accession Number
ITStef1tub2
Dothiorella acacicolaCPC 26349 *NR_145255KX228376NA
Dothiorella acericolaKUMCC 18-0137MK359449MK361182NA
Dothiorella acericolaCFCC 71537PV264855PV268112PV339819
Dothiorella acericolaN593PV264856PV268113PV339820
Dothiorella albiziaeMFLUCC 22-0057 *ON751762ON799588ON799590
Dothiorella albiziaeMFLU 22-0093ON707683NAON677453
Dothiorella alpinaCGMCC 3.18001KX499645KX499651NA
Dothiorella americanaUCD2272MO *HQ288219HQ288263HQ288298
Dothiorella americanaUCD2252MOHQ288218HQ288262HQ288297
Dothiorella brevicollisCMW 36463 *NR_111703JQ239390JQ239371
Dothiorella camelliaeUESTCC 22.0080OQ190530NAOQ275063
Dothiorella camelliaeUESTCC 22.0079OQ190532OQ241465OQ275065
Dothiorella camelliaeUESTCC 22.0078OQ190533OQ241466OQ275066
Dothiorella camelliaeCGMCC 3.24158OQ190531OQ241464OQ275064
Dothiorella capri-amissCBS 121763EU101323EU101368KX464850
Dothiorella casuariniCBS 120688DQ846773DQ875331NA
Dothiorella chiangmaiensisYW177NANANA
Dothiorella citricolaICMP16828EU673323EU673290EU673145
Dothiorella diospyricolaCBS 145972MT587398MT592110MT592581
Dothiorella dulcispinaeCMW 36460JQ239400JQ239387JQ239373
Dothiorella dulcispinaeCMW 25407 *EU101300MT592120KX464862
Dothiorella guttulataMFLUCC 17-0242 *KY797637NANA
Dothiorella heterophyllaeCMW 46458 *MN103794MH548348MH548324
Dothiorella ibericaCBS 115041 *AY573202AY573222EU673096
Dothiorella ibericaCBS 113189AY573199AY573230KX464855
Dothiorella iranicaIRAN1587CKC898231KC898214NA
Dothiorella italicaMFLUCC 17-0951 *MG828897MG829267MT592592
Dothiorella juglandisCBS 188.87EU673316EU673283EU673119
Dothiorella koaeCMW 48017 *MH447652MH548338MH548327
Dothiorella lampangensisMFLUCC 18-0232MK347758MK340869MK412874
Dothiorella longicollisCBS 122068EU144054EU144069NA
Dothiorella magnoliaeCFCC 51563 *KY111247KY213686NA
Dothiorella magnoliaeCFCC 71215PV264857NAPV339821
Dothiorella mangifericolaCBS 121760 *EU101290EU101335KX464877
Dothiorella mangifericolaIRAN1584CKC898221KC898204NA
Dothiorella monetiMUCC505 *EF591920EF591971EF591954
Dothiorella obovataMFLUCC 22-0058 *ON751763ON799589ON799591
Dothiorella obovataMFLU 22-0094ON707682NAON677452
Dothiorella omnivoraCBS 140349 *KP205497KP205470NA
Dothiorella parvaCBS 124720 *KC898234KC898217KX464866
Dothiorella parvaCBS 124721KX464123KX464615KX464867
Dothiorella plurivoraIRAN1557CKC898225KC898208NA
Dothiorella pretoriensisCMW 36480 *JQ239405JQ239392JQ239376
Dothiorella prunicolaCAP187EU673313EU673280EU673100
Dothiorella rhamniMFLUCC 14-0902 *KT240287MT592111MT592582
Dothiorella santaliMUCC 509 *EF591924EF591975EF591958
Dothiorella sarmentorumCBS 115038AY573206AY573223EU673101
Dothiorella sarmentorumIMI 63581b *AY573212AY573235NA
Dothiorella sarmentorumUESTCC 22.0076OQ190534NAOQ275067
Dothiorella sarmentorumUESTCC 22.0077OQ190535OQ241467OQ275068
Dothiorella sempervirentisIRAN1581CKC898237KC898219KX464885
Dothiorella sempervirentisIRAN1583CKC898236KC898220KX464884
Dothiorella striataICMP 16819EU673320EU673287EU673142
Dothiorella striataDAR80992 *KJ573643KJ573640NA
Dothiorella symphoricarposicolaMFLUCC 13-0498KJ742379KJ742382NA
Dothiorella symphoricarposicolaMFLUCC 13-0497 *KJ742378KJ742381NA
Dothiorella tectonaeMFLUCC12-0382KM396899KM409637KM510357
Dothiorella thailandicaMFLUCC 11-0438 *NR_111794JX646861JX646844
Dothiorella thripsitaBRIP 51876KJ573642KJ573639KJ577550
Dothiorella uruguayensisCBS 124908 *NR_156208 KX464886
Dothiorella vidmaderaDAR 78992 *EU768874EU768881HM800522
Dothiorella vidmaderaCBS 621.74KX464129KX464621KX464887
Dothiorella vidmaderaCBS 725.79KX464130KX464622KX464888
Dothiorella vidmaderaCFCC 71191PV264858PV268114PV339822
Dothiorella vidmaderaN282PV264859PV268115PV339823
Dothiorella vinea-gemmaeB116-3 *KJ573644KJ573641KJ577552
Dothiorella viticolaWA10NO01 *HM009376HM800511HM800519
Dothiorella viticolaWA10NO02HM009377HM800512HM800520
Dothiorella viticolaIRNBS28MN634039MN633993NA
Dothiorella viticolaMFLUCC 22-0059ON707685ON720571ON677455
Dothiorella yunnana comb. nov.CGMCC 3.18000 *KX499644KX499650NA
Dothiorella yunnana comb. nov.CFCC 71177PV264860NAPV339824
Dothiorella zanthoxyliUESTCC 22.0083OQ190537OQ241469OQ275070
Dothiorella zanthoxyliUESTCC 22.0084OQ190538OQ241470OQ275071
Dothiorella zanthoxyliCGMCC 3.24159 *OQ190536OQ241468OQ275069
Dothiorella zanthoxyliN280PV264861NAPV339825
Dothiorella zanthoxyliN280BPV264862NAPV339826
Neofusicoccum luteumCBS 562.92 *KX464170KX464690KX464968
Neofusicoccum luteumCMW 41365NR_147360KP860702KP860779
Note: NA, not applicable. Ex-type strains are marked with *, and strains from present study are in black bold.
Table 3. Isolates and GenBank accession numbers used in the genus Phaeobotryon.
Table 3. Isolates and GenBank accession numbers used in the genus Phaeobotryon.
SpeciesIsolatesGenBank Accession Number
LSUITStef1
Alanphillipsia euphorbiaCBS 136411 *KF777196KF777140MT592029
Phaeobotryon aplosporaCFCC 53774MN215871 MN215836MN205996
Phaeobotryon aplosporaCFCC 53775 *MN215872 MN215837NA
Phaeobotryon aplosporaCFCC 53776MN215873 MN215838MN205997
Phaeobotryon caraganaeNEFU817NAMH014076MH036714
Phaeobotryon caraganaeNEFU816NAMF193891MF509765
Phaeobotryon cupressiIRAN 1455C *KX464539FJ919672FJ919661
Phaeobotryon cupressiIRAN 1454CKX464538FJ919673FJ919662
Phaeobotryon cupressiIRAN 1445CNAKF766208KF766428
Phaeobotryon fraxiniCFCC 70762 *PP177348PP188527NA
Phaeobotryon fraxiniCFCC 70763PP177349PP188528NA
Phaeobotryon juniperiJU 001 *OP941644OP941637OP948218
Phaeobotryon juniperiJU 005OP941645OP941638OP948219
Phaeobotryon laricinumCFCC 70804PP960198PP960188PQ046941
Phaeobotryon laricinumCFCC 70805 *PP960199PP960189PQ046942
Phaeobotryon laricinumCFCC 70806PP960200PP960190PQ046943
Phaeobotryon longiparaphysiumCFCC 70807 *PP960203PP960193PQ046946
Phaeobotryon longiparaphysiumCFCC 70808PP960204PP960194PQ046947
Phaeobotryon maliXJAU 293001MW367101MW326854MW509519
Phaeobotryon maliXJAU 277201MW367094MW326853MW509520
Phaeobotryon maliXJAU 278201MW367092MW326852MW509516
Phaeobotryon maliXJAU 309401MW367100MW326858MW509517
Phaeobotryon maliXJAU 310001MW367093MW326878MW509518
Phaeobotryon mamaneCPC 12442DQ377899EU673333EU673299
Phaeobotryon mamaneCPC 12440 *EU673248KF766209EU673298
Phaeobotryon mamaneCPC 12443EU673249EU673334EU673300
Phaeobotryon negundinisCAA 797KU820971KX061513KX061507
Phaeobotryon negundinisCAA 798NG_069332KX061514KX061508
Phaeobotryon platycladiCFCC 58799 *OQ652543OQ651172OQ692930
Phaeobotryon platycladiCFCC 58800OQ652544OQ651173OQ692931
Phaeobotryon rhoinumCFCC 52449 MH133940MH133923MH133957
Phaeobotryon rhoinumCFCC 52450 *MH133941MH133924MH133958
Phaeobotryon rhoinumCFCC 52451MH133942MH133925MH133959
Phaeobotryon rhoinumXJAU 146801MW367102MW326857MW509522
Phaeobotryon rhoinumXJAU 276401MW367095MW326855MW509524
Phaeobotryon rhoinumXJAU 304901MW367096MW326856MW509523
Phaeobotryon rhoinumXJAU 316801MW367097MW326877MW509521
Phaeobotryon rhoisCFCC 89662 *KM030591KM030584KM030598
Phaeobotryon rhoisCFCC 89663KM030592KM030585KM030599
Phaeobotryon spiraeaeCFCC 53925 *OM049432OM049420NA
Phaeobotryon spiraeaeCFCC 53926OM049433OM049421NA
Phaeobotryon ulmiCBS 138854 *MT587321MT587540MT592274
Phaeobotryon ulmiCBS 123.30DQ377861KX464232KX464766
Phaeobotryon xizangense sp. nov.CFCC 71501 *PV264865PV264863PV268116
Phaeobotryon xizangense sp. nov.LZ204 *PV264866PV264864PV268117
Oblongocollomyces variabilisCBS 121774 *KX464536 NR_136994EU101357
Note: NA, not applicable. Ex-type strains are marked with *, and strains from present study are in black bold.
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MDPI and ACS Style

Zhou, J.; Li, A.; Jiang, N. Morphology and Phylogeny Reveal New Species and Records of Diplodia, Dothiorella, and Phaeobotryon Associated with Tree Cankers in Xizang, China. J. Fungi 2025, 11, 331. https://doi.org/10.3390/jof11050331

AMA Style

Zhou J, Li A, Jiang N. Morphology and Phylogeny Reveal New Species and Records of Diplodia, Dothiorella, and Phaeobotryon Associated with Tree Cankers in Xizang, China. Journal of Fungi. 2025; 11(5):331. https://doi.org/10.3390/jof11050331

Chicago/Turabian Style

Zhou, Jia, Aining Li, and Ning Jiang. 2025. "Morphology and Phylogeny Reveal New Species and Records of Diplodia, Dothiorella, and Phaeobotryon Associated with Tree Cankers in Xizang, China" Journal of Fungi 11, no. 5: 331. https://doi.org/10.3390/jof11050331

APA Style

Zhou, J., Li, A., & Jiang, N. (2025). Morphology and Phylogeny Reveal New Species and Records of Diplodia, Dothiorella, and Phaeobotryon Associated with Tree Cankers in Xizang, China. Journal of Fungi, 11(5), 331. https://doi.org/10.3390/jof11050331

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