Enhancing the Agronomic Value of Anaerobic Digestate: A Review of Current vs. Emerging Technologies, Challenges and Future Directions
Abstract
1. Introduction
2. Agronomic Value of Anaerobic Digestate
2.1. Fertiliser Potential of Anaerobic Digestate
2.2. Factors Affecting Digestate Quality
2.2.1. AD Process Conditions
2.2.2. Feedstocks for AD
| Feedstock Source | Digestate Characteristics | Reference | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| pH | VS/TS Ratio | Moisture Content (w/w%) | COD | EC (mS/cm) | Total C | Total N | C/N Ratio | NH4-N | Total P | Total K | ||
| Food waste | 7.83–8.20 | 70 | 59.27–75 | 1394 (mg/g) | 1.38–11.5 | 0.92–48.86 (w/w%) | 0.33–3.08 (w/w%) | 2.79–15.86 | 5.90–6.55 (g/kg) | 11.69 (g/kg) | 1.78 (g/kg) | [74,78,79] |
| Distillery stillage | - | - | 90.03 | 6749 (mg/L) | - | - | 1.96 (g/L) | - | - | 0.18 (g/L) | - | [72,80] |
| Cattle manure | 7.50–8.77 | 50 | 91.2–99 | 3660 (mg/L) | 4.6–5.54 | 36.0 (w/w%) | 8.4 (w/w%) | 4.2–12 | 4.4 (w/w%) | 4.3 (w/w%) | 10.7 (w/w%) | [75,81] |
| Pig waste and crop residues | 7.90–8.88 | - | 96.25 | - | 21.70 | 25.21 (w/w%) | 12.13 (w/w%) | 2.08 | 214.46–2932.74 (mg/kg) | 8.62–32.34 (g/kg) | 104.8 (g/kg) | [73,77] |
| Agricultural waste | 7.80–7.90 | 86.79 | 93.02–94.70 | - | - | 44.0 (w/w%) | 2.1 (w/w%) | 21.1 | 610 (mg/L) | 0.23–12.1 (g/kg) | 1.71–11.3 (g/kg) | [76,82] |
| Municipal sewage sludge | 6.80–8.20 | 53–54 | 93–97.7 | - | - | 120 (g/kg) | 20.8 (g/kg) | 5.8 | 290–420 (mg/L) | 10.0 (g/kg) | - | [83,84] |
3. Digestate Quality Concerns for Agricultural Utilisation
3.1. Risks of Unprocessed Digestate Application
3.1.1. Pathogens
3.1.2. Chemical Pollutants
3.1.3. Phytotoxicity
3.1.4. Effects on Soil Physiology
3.1.5. Ecotoxicity
3.1.6. Leaching and GHG Emissions
4. Guidelines for the Safe Use of Digestate: Global Scenario
5. Digestate Treatment for Direct Land Application
5.1. Pathogen Reduction
5.2. Stabilisation and Conditioning
6. Conventional Digestate Processing Technologies
6.1. Digestate Phase Separation
6.2. Production of Organo-Mineral Fertilisers from Digestate
6.2.1. Nutrient Recovery from the Liquid Digestate
6.2.2. Char from the Solid Digestate
7. Emerging Technologies for Digestate Quality Enhancement
7.1. Bioaugmentation for Biofertiliser Production
7.1.1. Plant Growth-Promoting Rhizobacteria
7.1.2. Bioaugmentation of Anaerobic Digestate
7.1.3. Bioaugmentation of Biogas Reactors
7.2. Enrichment of Phytostimulant Compounds in Digestate
7.2.1. Humic Substances
7.2.2. Co-Production of Biogas and Humic Fertilisers
7.2.3. Potential Synergistic Interactions of HS and PGPR
7.3. Production of Slow-Release Fertilisers (SRFs)
7.3.1. Digestate-Based Biochar
7.3.2. Digestate-Based Sustainable SRF Formulation
8. Current vs. Emerging Digestate Processing Technologies—Summary
9. Valorisation and Commercialisation of Anaerobic Digestate as Fertiliser for a Circular Bioeconomy: Challenges and Future Directions
10. Conclusions
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| AD Stage | Microbial Group | Role | Examples of Identified Species |
|---|---|---|---|
| Hydrolysis | Hydrolytic bacteria | Breakdown of carbohydrates, proteins, and lipids into simple sugars, amino acids, and fatty acids | Bacillus subtilis, Pseudomonas putida, Proteus vulgaris, Staphylococcushaemolyticus, Bacteroides ruminicola |
| Cellulolytic bacteria and fungi | Breakdown of cellulose, hemicellulose, and lignin | Clostridiumthermocellum, Aspergillus niger, Trichoderma reesei | |
| Acidogenesis | Fermentative acidogenic bacteria | Conversion of monomers into organic acids, alcohols, and gases | Clostridiumacetobutylicum, Bacteroides fragilis, Enterobcater aerogenes |
| Acetogenesis | Obligate hydrogen- producing acetogens | Oxidation of organic acids and higher VFAs into H2, CO2, and acetate | Syntrophomonas wolfei, Anaerovoraxodorimutans, Hydrogenisporaethanolica, Hydrogenophagacarboriunda |
| Autotrophic homoacetogens | Conversion of H2 and CO2 into acetate | Moorella thermoacetica, Clostridium aceticum, Clostridium thermoautotrophicum, Acetobacterium woodie, Syntrophobacter wolinii | |
| Heterotrophic homoacetogens | Conversion of alcohols and other intermediates into acetate | ||
| Methanogenesis | Hydrogenotrophic methanogens | Reduction of CO2 into CH4 byincorporating H2 | Methanobacterium formicium, Methanobrevibacter smithii, Methanoculleus thermophilicus, Methanosphaera stadtmanae, Methanococcus maripaludis |
| Acetoclastic methanogens | Oxidation of acetate into CH4 and CO2 | Methanosarcina thermophila, Methanosaeta concilii |
| Region/Country | EU | EU | EU | EU | UK | China | US | Canada | Australia (VIC) | Australia (QLD) | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Type of standard | FPR | EWC-WFD | ECN-QAS | Ecolabel | BSI PAS 110-WRAP | Code of China GB38400 | EPA CFR 503 | CFIA TM T-4-93 | EPA Victoria | EOWC 010001054 | |
| Reference | [126] | [127] | [128] | [129] | [130] | [131] | [132] | [133] | [134] | [135] | |
| Nature of the digestate | S/L | S | S | S | S | S | S | S | S | S | L/W |
| General properties | |||||||||||
| Dry matter (dm) (w/w%) | - | - | - | - | 15 | - | - | - | - | - | - |
| Moisture content (w/w%) | - | - | - | - | - | 60 | - | - | - | - | - |
| Organic C (w/w%) | 15 (S) 5 (L) | 15 | 15 | - | - | - | - | - | - | - | - |
| Macronutrients | |||||||||||
| Total N (w/w%) | ≥1 a–2.5 b (S) ≥1 a–2 b (L) | - | - | - | - | - | - | - | - | - | |
| Total P2O5 (w/w%) | ≥1 a–2 b (S) ≥1 a/b (L) | - | - | - | - | - | - | - | - | - | |
| Total K2O (w/w%) | ≥1 a–2 b (S/L) | - | - | - | - | - | - | - | - | - | |
| Heavy metals/TEs | |||||||||||
| As (mg/kg of dm) | 40 | - | - | 10 | - | 15 | 41 | 13 | 20 | 20 | 1 (mg/L) |
| Cd (mg/kg of dm) | 1.5 | 1.2 | 1.5 | 1.3 | 1.2 | 3 | 39 | 3 | 1 | 10 | 0.2 (mg/L) |
| Cr (mg/kg of dm) | 2 (Cr(VI)) | 100 | 60 | 2 (Cr(VI)) | 80 | 150 | 1200 | 210 | 100 | 100 | 1 (mg/L) |
| Cu (mg/kg of dm) | 300 | 200 | 300 | 200 | 160 | - | 1500 | 400 | 150 | 150 | 10 (mg/L) |
| Pb (mg/kg of dm) | 120 | 120 | 130 | 100 | 160 | 50 | 300 | 150 | 150 | 100 | 2 (mg/L) |
| Hg (mg/kg of dm) | 1 | 1 | 0.45 | 0.45 | 0.8 | 2 | 17 | 0.8 | 1 | 5 | 0.02 (mg/L) |
| Ni (mg/kg of dm) | 50 | 50 | 40 | 50 | 40 | 600 | 420 | 62 | 60 | 60 | 1 (mg/L) |
| Zn (mg/kg of dm) | 800 | 400 | 600 | 300 | 320 | - | 2800 | 700 | 300 | 300 | 20 (mg/L) |
| Se (mg/kg of dm) | - | - | - | - | - | - | 36 | 2 | 5 | 5 | 0.5 (mg/L) |
| B (mg/kg of dm) | - | - | - | - | - | - | - | - | 100 | - | - |
| Mo (mg/kg of dm) | - | - | - | - | - | - | - | 5 | |||
| Co (mg/kg of dm) | - | - | - | - | - | 100 | - | - | - | - | - |
| Tl (mg/kg of dm) | - | - | - | - | - | 2.5 | - | - | - | - | |
| V (mg/kg of dm) | - | - | - | - | - | 325 | - | - | - | - | - |
| Sb (mg/kg of dm) | - | - | - | - | - | 25 | - | - | - | - | - |
| Organic pollutants | |||||||||||
| Total petroleum hydrocarbons c (w/w%) | - | - | - | - | - | 0.25 | - | - | - | - | - |
| Total phthalate esters d (mg/kg of dm) | - | - | - | - | - | 25 | - | - | - | - | - |
| PAH16 ** (mg/kg of dm) | 5 | 6 | - | - | - | 0.55 # | - | - | 6 | - | - |
| PCB7 *** (mg/kg of dm) | 0.15 | - | - | - | - | - | - | 0.0001–0.1 e 0.00003 f (TEF) g | <0.2 * | <0.1 * | <0.04 * (mg/L) |
| PFAS (mg/kg of dm) | - | - | - | - | - | - | - | - | - | <0.002 * (μg/L) | <0.002 * (μg/L) |
| DDT/DDD/DDE **** (mg/kg of dm) | - | - | - | - | - | - | - | - | 0.5 | 0.5 | <0.04 * (mg/L) |
| Aldrin/dieldrin (mg/kg of dm) | - | - | - | - | - | - | - | - | 0.02 | 0.02 | <0.04 * (mg/L) |
| Chlordane/hepatachlor/ hexachlorobenzene/ lindane (benzene hexachloride) (mg/kg of dm) | - | - | - | - | - | - | - | - | 0.02 | - | - |
| Physical contaminants | |||||||||||
| Total physical contaminants (g/kg of dm) | 5 | - | - | - | 0.04–0.36 (kg/t) | - | - | - | - | 0.36 | 0.14 |
| Impurities > 2 mm (w/w%) | 3 (g/kg of dm) | 0.5 | 0.5 | - | - | - | - | - | 0.5 | - | - |
| Total plastics (% m/m of dm) | - | - | - | - | - | - | - | - | - | 0.5 | 0.5 |
| Total stones (g/kg) | - | - | - | - | 3.2–32 (kg/t) | - | - | - | - | 32 | 12.8 |
| Pathogens | |||||||||||
| Faecal coliforms (MPN/g) h | - | - | - | - | - | 100 | 1000 | - | 1000 | 1000 | 1000 (MPN/mL) |
| Escherichia coli | 1000 (CFU/g) | 1000 (CFU/g) | - | 100 (CFU/g) | 1000 (CFU/g) | - | - | 1000 (MPN/g) | 100 (MPN/g) | 100 (MPN/g) | 100 (MPN/mL) |
| Salmonella spp. | absent in 25 g | absent in 25 g | absent in 25 g | - | absent in 25 g | - | 3 MPN/ 4 g | absent in 25 g | absent in 50 g | not detected | not detected |
| Clostridium perfringens (CFU/g) i | - | - | - | - | - | - | - | - | 10 | - | - |
| Enteric virus (PFU/g) j | - | - | - | - | - | - | - | - | - | 1 | 1 |
| Helminth ova (in 4 g) | - | - | - | - | - | - | - | - | - | 1 | 1 |
| Stability/maturity | |||||||||||
| Oxygen uptake rate (mmol O2/kg of organic matter/h) | 25 | 25 | - | - | - | - | - | - | 25 | - | - |
| Residual biogas potential (L/g VS) | 0.25 | - | - | - | 0.45 | - | - | - | - | - | - |
| Phytotoxicity | |||||||||||
| Seedling emergence and germination rate (%) | 70–90 | - | - | - | - | - | - | - | - | - | - |
| EC k for toxic effects (compared to the control) (%) | - | - | - | - | - | <25 | - | - | - | - | - |
| PGPR Species Used for the Bioaugmentation | Effects on Biogas Production/Fertiliser Value of Digestate | References |
|---|---|---|
| Bacillus subtilis, B. clausii, and Pseudomonas putida | Enhanced CH4 and H2 yields. Increased relative abundance of syntrophic microbes during methanogenesis. | [68,213,214] |
| Alcaligenes spp., Enterobacter hormaechei, Bacillus cereus, B. licheniformis, and B. circulans | Reduced lignocellulosic content and reduced abundance of antibiotic-resistance genes in compost. Increased xylanase activity and ATP hydrolysis during composting. | [67] |
| Bacillus velezensis and Azospirillum brasilense | Improved soil properties-available P, organic matter, and enzyme activities. Inhibition of plant pathogens and stimulation of beneficial soil microbes. | [215,217] |
| Bacillus subtilis, Serratia ficaria, Pseudomonas putida, and P. fluorescens | Alleviation of salt stress and increased plant growth and yield at high salinity levels. Enhanced plant antioxidant enzyme activities. | [218,219,220] |
| N2-fixing PGPR | Amelioration of Cr-induced adverse effects on crop growth and yield. A significant decline in Cr uptake by plants. | [221] |
| Pseudomonas moraviensis, Bacillus amyloliquefaciens, and Alcaligenes faecalis | Improved plant growth and yield, antioxidant enzymatic activities, and soil water retention under drought stress. | [16] |
| Type of HS Used/Generated | Effect on Biogas Production/Fertiliser Value of Digestate | References |
|---|---|---|
| Commercial HAs | Dual effects on enzyme activities during AD: inhibition of hydrolytic enzymes and stimulation of acidogenic enzymes. Enhanced abundance of microorganisms with mediated interspecies electron transfer ability. HAs with too high or too low redox potentials: not conducive to methanogenesis. | [242,245] |
| HA and FA derived from thermal hydrolysis of sludge followed by alkaline-resin extraction | HAs influenced intracellular enzymes. Macromolecular HAs promoted sludge solubilisation and acidification but hindered hydrolysis and methanogenesis. Micromolecular HAs promoted acidification but inhibited methanogenesis. FAs exhibited a more positive influence on sludge AD than HAs, due to its weak net trapping effect on extracellular enzymes, resulting from the smaller molecular weight. | [244,247] |
| Digestate-derived HS and HA produced by hydrothermal humification of the substrate | Increased plant growth and yields. Enhanced slow release of nutrients and water retention capabilities. | [120,246] |
| HA produced by solid-state AD and subsequent aerobic composting | Improved biogas production by adjusting C/N ratio. Increased cellulose degradation rate. Enriched syntrophic consortia. Aerobic composting promoted humification. Enhanced microbially mediated N retention, resulting in reduced N loss. | [231,248] |
| HA production by alkaline hydrothermal treatment of the substrate with hemicellulose and lignin | Improved digestate dewaterability. Higher total C content and thermal stability in the humic extract than the commercially available HA and FA. Enhanced CH4 yield by the lignocellulosic material addition. | [241,243] |
| Method of Biochar-Based SRF Production | SRF Effect | Reference |
|---|---|---|
| Pyrolysis of digestate blended with Ca-bentonite and biochar mixed with the liquid fraction of the digestate. | Slow-release performance synchronised with plant growth and yield. | [262] |
| Digestate entrapped into biochar in different particle sizes. | Biochar with low particle sizes immobilised the highest volume of digestate and allowed faster infiltration of irrigation water. The digestate-encapsulated biochar (DEB) had the best effectiveness on plant growth. The DEB leached the least N compared to the compost, raw digestate, and mineral fertilisers. The DEB boosted the soil nitrification process and inhibited the denitrification process. | [263] |
| Impregnation of raw biochar derived from lignocellulosic crop residues with biogas slurry. | Demonstrated properties linked to the capability of the fertiliser to release nutrients in a controlled manner. Positive impact on the mineral nutrition of plants, resulting in an average increase in N, P, and K concentrations. | [119] |
| MAP@BRC fertiliser—developed by magnesite powder (Mg source) and biogas residue char (P source). | Increased crop yield and water productivity. Improved soil nutrient levels and microbial populations. Reduced soil acidification and heavy metal pollution risk. | [264] |
| Technology | Nutrient Recovery Efficiency (N, P, K) | Contaminant Reduction (Pathogens, Heavy Metals, Organics) | Trends in Digestate Quality Improvements | TRL (Approx.) | Typical CAPEX/OPEX (Qualitative) |
|---|---|---|---|---|---|
| Ammonia stripping | N: 60–90% TAN recovery; P/K mostly unaffected | Pathogens: minimal unless thermal stripping; metals/organics unchanged | Produces concentrated ammonium salts; reduces ammonia emissions; N-stabilised liquor | 7–9 | CAPEX: Moderate–High; OPEX: Moderate (energy, alkali, absorption costs) |
| Struvite precipitation (Mg–NH4–PO4) | P: 50–90% recovered as struvite; N: 10–30%; K not recovered | Pathogens: no effect; some metal co-precipitation possible | Produces slow-release P fertiliser; reduces soluble P in liquor | 7–9 | CAPEX: Low–Moderate; OPEX: Low–Moderate (Mg source, pH control) |
| Pyrolysis (digestate → biochar/syngas/ bio-oil) | P & K concentrated in char; N partially retained (lower plant availability at high T) | Pathogens: complete kill; metals immobilised in char but still present; organics cracked | Produces stable, carbon-rich soil amendment; easier transport/storage | 5–8 | CAPEX: High; OPEX: Moderate–High (drying energy, maintenance) |
| Amendments with biostimulants: HS and PGPR | No direct recovery; improves crop uptake efficiency of NPK | Pathogens: no direct effect; metals/organics bioavailability may shift | Improves plant growth, root traits, nutrient uptake; complements digestate fertilisation | 4–7 | CAPEX: Low; OPEX: Low (product cost, mixing) |
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Senevirathne, N.; Kaparaju, P. Enhancing the Agronomic Value of Anaerobic Digestate: A Review of Current vs. Emerging Technologies, Challenges and Future Directions. Agriculture 2025, 15, 2108. https://doi.org/10.3390/agriculture15202108
Senevirathne N, Kaparaju P. Enhancing the Agronomic Value of Anaerobic Digestate: A Review of Current vs. Emerging Technologies, Challenges and Future Directions. Agriculture. 2025; 15(20):2108. https://doi.org/10.3390/agriculture15202108
Chicago/Turabian StyleSenevirathne, Nimesha, and Prasad Kaparaju. 2025. "Enhancing the Agronomic Value of Anaerobic Digestate: A Review of Current vs. Emerging Technologies, Challenges and Future Directions" Agriculture 15, no. 20: 2108. https://doi.org/10.3390/agriculture15202108
APA StyleSenevirathne, N., & Kaparaju, P. (2025). Enhancing the Agronomic Value of Anaerobic Digestate: A Review of Current vs. Emerging Technologies, Challenges and Future Directions. Agriculture, 15(20), 2108. https://doi.org/10.3390/agriculture15202108

