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Review

Bioeconomy-Based Approaches for the Microbial Valorization of Citrus Processing Waste

by
Ioannis Stavrakakis
1,
Paraschos Melidis
1,
Nektarios Kavroulakis
2,
Michael Goliomytis
3,
Panagiotis Simitzis
3,* and
Spyridon Ntougias
1,*
1
Laboratory of Wastewater Management and Treatment Technologies, Department of Environmental Engineering, Democritus University of Thrace, Vas. Sofias 12, 67132 Xanthi, Greece
2
Institute for Olive Tree, Subtropical Plants and Viticulture, Hellenic Agricultural Organization—Dimitra (ELGO-DIMITRA), Agrokipio-Souda, 73164 Chania, Greece
3
Laboratory of Animal Breeding and Husbandry, Department of Animal Science, Agricultural University of Athens, 75 Iera Odos, 11855 Athens, Greece
*
Authors to whom correspondence should be addressed.
Microorganisms 2025, 13(8), 1891; https://doi.org/10.3390/microorganisms13081891
Submission received: 6 June 2025 / Revised: 9 August 2025 / Accepted: 12 August 2025 / Published: 13 August 2025
(This article belongs to the Special Issue Earth Systems: Shaped by Microbial Life)

Abstract

The citrus processing industry is an economically important agro-industrial sector worldwide; however, it produces significant amounts of waste annually. The biorefinery concept and the recovery of bio-based materials from agro-industrial residues, including citrus processing waste, are emphasized in the European Green Deal, reflecting the EU’s commitment to fostering circularity. Biotreatment of citrus processing waste, including bioconversion into biomethane, biohydrogen, bioethanol and biodiesel, has been applied to valorize biomass for energy recovery. It can also be composted into a valuable soil conditioners and fertilizers, while raw and fermented citrus residues may exhibit phytoprotective activity. Citrus-derived residues can be converted into materials such as nanoparticles with adsorptive capacity for heavy metals and recalcitrant organic pollutants, and materials with antimicrobial properties against various microbial pathogens, or the potential to remove antibiotic-resistance genes (ARGs) from wastewater. Indeed, citrus residues are an ideal source of industrial biomolecules, like pectin, and the recovery of bioactive compounds with added value in food processing industry. Citrus processing waste can also serve as a source for isolating specialized microbial starter cultures or as a substrate for the growth of bioplastic-producing microorganisms. Solid-state fermentation of citrus residues can enhance the production of hydrolytic enzymes, with applications in food and environmental technology, as well as in animal feed. Certain fermented products also exhibit antioxidant properties. Citrus processing waste may be used as alternative feedstuff that potentially improves the oxidative stability and quality of animal products.
Keywords: citrus processing waste; solid-state fermentation; cellulose degradation; antioxidant activity; biomass valorization; bioeconomy concept citrus processing waste; solid-state fermentation; cellulose degradation; antioxidant activity; biomass valorization; bioeconomy concept

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MDPI and ACS Style

Stavrakakis, I.; Melidis, P.; Kavroulakis, N.; Goliomytis, M.; Simitzis, P.; Ntougias, S. Bioeconomy-Based Approaches for the Microbial Valorization of Citrus Processing Waste. Microorganisms 2025, 13, 1891. https://doi.org/10.3390/microorganisms13081891

AMA Style

Stavrakakis I, Melidis P, Kavroulakis N, Goliomytis M, Simitzis P, Ntougias S. Bioeconomy-Based Approaches for the Microbial Valorization of Citrus Processing Waste. Microorganisms. 2025; 13(8):1891. https://doi.org/10.3390/microorganisms13081891

Chicago/Turabian Style

Stavrakakis, Ioannis, Paraschos Melidis, Nektarios Kavroulakis, Michael Goliomytis, Panagiotis Simitzis, and Spyridon Ntougias. 2025. "Bioeconomy-Based Approaches for the Microbial Valorization of Citrus Processing Waste" Microorganisms 13, no. 8: 1891. https://doi.org/10.3390/microorganisms13081891

APA Style

Stavrakakis, I., Melidis, P., Kavroulakis, N., Goliomytis, M., Simitzis, P., & Ntougias, S. (2025). Bioeconomy-Based Approaches for the Microbial Valorization of Citrus Processing Waste. Microorganisms, 13(8), 1891. https://doi.org/10.3390/microorganisms13081891

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