The Origin of Organic Matter Pore Destruction in Post-Mature Shales of the Qiongzhusi Formation, Southwestern Upper Yangtze, China: Evidence from Scanning Electron Microscopy
Abstract
1. Introduction
2. Geological Background
3. Materials and Methods
4. Results
4.1. Petrology
4.2. OM Pores
4.2.1. OM Pores Within Sedimentary Organic Matter
4.2.2. OM Pores Within Migrated Organic Matter
- OM pores are poorly developed and exhibit highly irregular morphologies. Compared with commercially productive shales, the migrated organic matter in the Qiongzhusi shales has far fewer OM pores [6,8,9,10,13,47,48]. Most of the OM pores are isolated and of varying sizes, with pore sizes ranging from a few nanometers to several hundred nanometers. The plane porosity of organic matter generally does not exceed 5% (Figure 5). Unlike the OM pores in commercially developed shales—which are of predominantly nearly circular or elliptical in shape—the OM pores in the Qiongzhusi shales are highly irregular in shape (Figure 5h,i).
- OM pores are relatively less developed in the shales with TOC > ~4 wt.%. For samples with TOC > ~4 wt.%, most of the organic matter is dense, with no pores that can be observed under SEM (Figure 5a–f), except for locally developed, coalesced, sheet-like pores (Table 2). The organic matter within the framboidal pyrite is also dense in shales with TOC > ~4 wt.% (Figure 6a,b).
- OM pores are relatively well developed in samples with TOC < ~2.5 wt.%. Samples with TOC < 2.5 wt.% exhibit less developed OM pores; however, the OM pores are nonetheless common and—locally—relatively well developed (Figure 7). These pores are predominantly isolated and irregular in shape (Table 2, Figure 5g–i). In some compaction shadows, the OM pores are well-developed and exhibit nearly circular or elliptical morphologies (Figure 7d–f), resembling those observed in commercially exploited shales of relatively low thermal maturity. Some organic matter appears to have been subjected to unidirectional compaction, with internal pores arranged in a direction (Figure 7c). In these shales, the organic matter within the framboidal pyrite has well-developed OM pores—either homogeneous or complex sponge-like in morphology (with a maximum plane porosity of 15%) (Table 2, Figure 6c–f).
4.3. Other Pores in the Shales
4.4. Porosity of the Shales
5. Discussion
5.1. Reservoir Quality of the Qiongzhusi Shales
5.2. Origin of the Destruction of OM Pores in the Qiongzhusi Shales
5.2.1. Graphitization and OM Pore Destruction
5.2.2. Compaction and OM Pore Destruction
- Formation of OM pores provides essential space for compaction. Prior to thermal maturity, kerogen in source rocks typically generates substantial quantities of bitumen, which infiltrates and fills pores—thereby significantly reducing shale porosity [4]. In shales with high TOC, pore space may be nearly exhausted following bitumen saturation [2], severely constraining compaction due to the absence of pore space. However, during and after the wet-gas window (Ro ≤ 3.0%), abundant OM pores develop [21,64], creating additional pore volume that accommodates further compaction as burial depth increases. This mechanism is theoretically applicable to the Qiongzhusi shales in the study area.
- A substantial increase in shale burial depth provided the driving force for compaction. Between the onset of the wet-gas window and the maximum paleo-burial depth, the burial depth of the Qiongzhusi shales in the study area increased by 3000–4500 m [40]. This substantial increase in overburden pressure provided the requisite energy to sustain ongoing compaction.
- Absence of Overpressure Favors Compaction: Carbonate karst reservoirs developed at the top of the underlying Dengying Formation likely enhanced the efficiency of hydrocarbon expulsion—particularly from the basal intervals of the Qiongzhusi shales—during hydrocarbon generation [42,65]. As a result, the development of overpressure was inhibited, thereby establishing favorable geomechanical conditions for compaction.
- The relatively low mechanical strength of organic-rich shales rendered them particularly susceptible to compaction. Elevated organic matter and clay mineral content can collectively reduce shale strength and diminish its resistance to compaction [63,66]. Shales rich in organic matter or clay minerals—owing to their relatively low mechanical strength—are particularly susceptible to compaction, which may have significantly impacted pore evolution even during the early stage of extensive organic matter pore development [9,67]. Milliken et al. (2013) observed that in the Marcellus shale (Ro ranging from 1.0% to 2.1%), porosity exhibited a strong positive correlation with TOC only up to TOC ≈ 5.5 wt.%; beyond this threshold, porosity plateaued or even declined—a trend attributed by the authors to compaction [9]. Similarly, Lis et al. (2025) noted that although OM pores are theoretically expected to develop during the wet-gas to dry-gas stage, they remain poorly developed in Silurian shales of the Baltic Basin [67]. This anomaly was ascribed to an exceptionally high clay mineral content (~50 vol.%), which compromises the development of a rigid mineral framework and eliminates pressure-shadow protection essential for preserving OM pores. In the basal Qiongzhusi Formation shales—characterized by exceptionally high TOC (up to 13.7 wt.%)—such pronounced organic enrichment would inevitably lead to substantial reductions in rock strength, thereby strongly compacting.
5.3. Implications for Hydrocarbon Exploration
6. Conclusions
- (1)
- The Qiongzhusi shales exhibit low porosity and poorly developed OM pores. However, this poor development of the OM pores is the result of post-formation destruction rather than an original feature. Despite the generally poor OM pore development, highly porous spongy-like migrated OM is still observable under SEM, indicating that the widespread destruction of OM pores was not caused by graphitization. This finding negates the traditional view that graphitization leads to the massive destruction of OM pores in post-mature shales and improves our understanding of pore evolution in post-mature shales.
- (2)
- Compaction likely played a major role in the destruction of OM pores. Consequently, anti-compaction mechanisms (e.g., overpressure) are critical for pore preservation in post-mature shales. In the presence of overpressure, post-mature shales may still serve as high-quality shale-gas reservoirs (e.g., the Marcellus Shale).
- (3)
- The continuous compaction-induced destruction of OM pores after their formation results in a “depth window” for the development of high-quality shale gas reservoirs: Beyond a certain depth, OM pores are largely destroyed, leading to a significant decline in reservoir quality, potentially to the extent of becoming non-reservoir. Therefore, in shale-gas exploration, priority should be given to areas where the maximum paleoburial depth falls within this window.
- (4)
- It should be noted that the mechanisms, controlling factors, and extent of compaction-driven OM pore destruction require further investigation. Moreover, the conclusions of this study are primarily based on the Qiongzhusi shales and need to be validated by studies of shales from more basins.
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Abbreviations
| BSE | Backscattered electron; |
| GPa | Giga Pascal; |
| OM | Organic matter; |
| RO | Vitrinite reflectance; |
| SOM | Sedimentary organic matter; |
| SEM | Scanning electron microscopy; |
| TOC | Total organic carbon. |
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| Sample Number | Section/Well | Sample | Lithology | TOC/wt.% | Porosity/% |
|---|---|---|---|---|---|
| 1 | Majinzi | M-1 | argillaceous siltstone | 3.6 | / |
| 2 | Z1 | Z1-1 | argillaceous siltstone | 4.77 | 2.4 |
| 3 | Z1 | Z1-2 | argillaceous siltstone | 4.24 | 1.8 |
| 4 | Z1 | Z1-3 | argillaceous siltstone | 1.84 | 3.4 |
| 5 | Z1 | Z1-4 | argillaceous siltstone | 1.8 | / |
| 6 | Z1 | Z1-5 | argillaceous siltstone | 1.77 | 2.6 |
| 7 | Z1 | Z1-5 | argillaceous siltstone | 1.68 | 3.3 |
| 8 | Z1 | Z1-7 | argillaceous siltstone | 1.68 | 4.5 |
| 9 | Z1 | Z1-8 | argillaceous siltstone | 4.0 | / |
| 10 | Z1 | Z1-9 | silty mudstone | 2.1 | / |
| 11 | Songlin | ZNC-1 | argillaceous siltstone | 6.95 | 1.6 |
| 12 | Songlin | ZNC-2 | argillaceous siltstone | 6.96 | / |
| 13 | Songlin | ZNC-3 | argillaceous siltstone | 6.61 | / |
| 14 | Songlin | ZNC-4 | mudstone | 13.7 | 1.3 |
| 15 | Songlin | ZNC-5 | mudstone | 10.9 | 2.1 |
| 16 | Songlin | ZNC-6 | mudstone | 1.6 | / |
| 17 | Songlin | ZNC-7 | mudstone | 1.7 | / |
| 18 | Jingkou | JK-1 | marl | 1.33 | 2.3 |
| 19 | Jingkou | JK-2 | marl | 1.77 | 1.6 |
| 20 | Zhao 1 | Zhao-1 | mudstone | / | / |
| 21 | YS6 | YS-1 | argillaceous siltstone | / | / |
| 22 | YS6 | YS-2 | mudstone | 0.6 | / |
| 23 | Jinzhu1 | JZ-1 | mudstone | 1.15 | / |
| Pore Types | Pore Pattern | Typical Image | Description |
|---|---|---|---|
| Isolated irregular pores | ![]() | ![]() | The pores formed in isolation, exhibiting heterogeneous sizes, irregular morphologies, and poor interconnectivity. |
| Isolated regular pores | ![]() | ![]() | The pores formed in isolation, exhibiting relatively uniform morphologies and poor interconnectivity. |
| Homogeneous sponge-like pores | ![]() | ![]() | The pores are extensively and uniformly developed and exhibit excellent interconnectivity. Morphology of the pores is nearly ellipsoidal. |
| Complex sponge-like pores | ![]() | ![]() | The pore network is highly developed, exhibiting significant heterogeneity in pore size and excellent interconnectivity. Morphology of the pores is nearly ellipsoidal. |
| Coalesced sheet-like pores | ![]() | ![]() | The sheet-like pores are concentrated and aligned along a single direction. |
| Dense organic matter | ![]() | ![]() | Organic matter has no pore development inside and closely adheres to minerals. |
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© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
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Min, H.; Xu, J.; Liang, S.; Liu, C.; Zhao, L. The Origin of Organic Matter Pore Destruction in Post-Mature Shales of the Qiongzhusi Formation, Southwestern Upper Yangtze, China: Evidence from Scanning Electron Microscopy. Minerals 2026, 16, 529. https://doi.org/10.3390/min16050529
Min H, Xu J, Liang S, Liu C, Zhao L. The Origin of Organic Matter Pore Destruction in Post-Mature Shales of the Qiongzhusi Formation, Southwestern Upper Yangtze, China: Evidence from Scanning Electron Microscopy. Minerals. 2026; 16(5):529. https://doi.org/10.3390/min16050529
Chicago/Turabian StyleMin, Huajun, Jinhui Xu, Shuangqing Liang, Chunyan Liu, and Limin Zhao. 2026. "The Origin of Organic Matter Pore Destruction in Post-Mature Shales of the Qiongzhusi Formation, Southwestern Upper Yangtze, China: Evidence from Scanning Electron Microscopy" Minerals 16, no. 5: 529. https://doi.org/10.3390/min16050529
APA StyleMin, H., Xu, J., Liang, S., Liu, C., & Zhao, L. (2026). The Origin of Organic Matter Pore Destruction in Post-Mature Shales of the Qiongzhusi Formation, Southwestern Upper Yangtze, China: Evidence from Scanning Electron Microscopy. Minerals, 16(5), 529. https://doi.org/10.3390/min16050529













