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The Multiple Dimensions of Networks in Cancer: A Perspective

A 3D Agent-Based Model of Lung Fibrosis

Institute for Condensed Matter Physics, Technische Universität Darmstadt, 64289 Darmstadt, Germany
Department of Computer Science, University of Surrey, Guildford GU2 7XH, UK
Biophysics Department, GSI Helmholtzzentrum für Schwerionenforschung GmbH, 64291 Darmstadt, Germany
Author to whom correspondence should be addressed.
Academic Editor: Dumitru Baleanu
Symmetry 2022, 14(1), 90;
Received: 29 November 2021 / Revised: 30 December 2021 / Accepted: 3 January 2022 / Published: 6 January 2022
(This article belongs to the Special Issue Networks in Cancer: From Symmetry Breaking to Targeted Therapy)
Understanding the pathophysiology of lung fibrosis is of paramount importance to elaborate targeted and effective therapies. As it onsets, the randomly accumulating extracellular matrix (ECM) breaks the symmetry of the branching lung structure. Interestingly, similar pathways have been reported for both idiopathic pulmonary fibrosis and radiation-induced lung fibrosis (RILF). Individuals suffering from the disease, the worldwide incidence of which is growing, have poor prognosis and a short mean survival time. In this context, mathematical and computational models have the potential to shed light on key underlying pathological mechanisms, shorten the time needed for clinical trials, parallelize hypotheses testing, and improve personalized drug development. Agent-based modeling (ABM) has proven to be a reliable and versatile simulation tool, whose features make it a good candidate for recapitulating emergent behaviors in heterogeneous systems, such as those found at multiple scales in the human body. In this paper, we detail the implementation of a 3D agent-based model of lung fibrosis using a novel simulation platform, namely, BioDynaMo, and prove that it can qualitatively and quantitatively reproduce published results. Furthermore, we provide additional insights on late-fibrosis patterns through ECM density distribution histograms. The model recapitulates key intercellular mechanisms, while cell numbers and types are embodied by alveolar segments that act as agents and are spatially arranged by a custom algorithm. Finally, our model may hold potential for future applications in the context of lung disorders, ranging from RILF (by implementing radiation-induced cell damage mechanisms) to COVID-19 and inflammatory diseases (such as asthma or chronic obstructive pulmonary disease). View Full-Text
Keywords: agent-based modeling; lung fibrosis; alveolar ducts; 3D modeling agent-based modeling; lung fibrosis; alveolar ducts; 3D modeling
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MDPI and ACS Style

Cogno, N.; Bauer, R.; Durante, M. A 3D Agent-Based Model of Lung Fibrosis. Symmetry 2022, 14, 90.

AMA Style

Cogno N, Bauer R, Durante M. A 3D Agent-Based Model of Lung Fibrosis. Symmetry. 2022; 14(1):90.

Chicago/Turabian Style

Cogno, Nicolò, Roman Bauer, and Marco Durante. 2022. "A 3D Agent-Based Model of Lung Fibrosis" Symmetry 14, no. 1: 90.

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