Impact of Food Processing Industry Wastewater on Root Growth and DNA Damage in Allium cepa L. as Assessed by the Comet Assay
Abstract
1. Introduction
2. Materials and Methods
2.1. Sample Collection
2.2. Physicochemical and HPLC Analysis of Wastewater
2.3. Preparation of Dilution
2.4. Plant Growth Assessment
2.5. DNA Extraction
2.6. Comet Assay and DNA Damage Analysis
3. Results
3.1. Physicochemical Analysis of Wastewater
3.2. Chemical Analysis of Wastewater
3.3. Plant Growth Analysis
3.3.1. Observation of Root Color
3.3.2. Root Length
3.4. DNA Quantification and Comet Assay
3.4.1. Quantitative and Qualitative Analysis of DNA
3.4.2. Damaged DNA Analysis by Comet Assay
4. Discussion
5. Conclusions
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Abbreviations
| HPLC | High-performance liquid chromatography |
| COD | Chemical oxygen demand |
| BOD | Biological oxygen demand |
| BHA | Butylated hydroxyanisole |
| BHT | Butylated Hydroxytoluene |
| EC | Electrical conductivity |
| TDS | Total dissolved solids |
| CTAB | Cetyltrimethylammonium bromide |
References
- Mishra, H. Environmental degradation and impacts on agricultural production: A challenge to urban sustainability. In Sustainable Urban Environment and Waste Management: Theory and Practice; Springer Nature: Singapore, 2025; pp. 53–92. [Google Scholar]
- Dhopte, D.N. Assessment of quality of water through physicochemical parameters—A review. Int. Res. J. Eng. Technol. 2021, 8, 945–951. [Google Scholar]
- Gezahegn, A.; Merga, L.B.; Mammo, S. Industrial effluents caused environmental pollution and its potential ecological and human health impacts in Ethiopia: A review. Waste Manag. Bull. 2025, 3, 100240. [Google Scholar] [CrossRef]
- Turkoglu, S. Genotoxicity of five food preservatives tested on root tips of Allium cepa L. Mutat. Res./Genet. Toxicol. Environ. Mutagen. 2007, 626, 4–14. [Google Scholar] [CrossRef]
- Mortula, M.; Shabani, S. Removal of TDS and BOD from synthetic industrial wastewater via adsorption. Int. Proc. Chem. Biol. Environ. Eng. 2012, 41, 166–170. [Google Scholar]
- John, A.; Luqman, M.; Muhammad, S.; Hanif, U.; Sardar, A.A.; Ali, S.; Hasnain, A.; Tufail, M.; Khan, Z.I.; Hussain, M.I. Genotoxicity of synthetic food colors on nitrogen-fixing bacteria in agricultural lands irrigated with wastewater of corresponding industries. Sustainability 2023, 15, 2897. [Google Scholar] [CrossRef]
- Kalsoom, S.; Abbas, W.; Luqman, M.; Mehmood, Z.; Iqbal, M.; Shah, H.; Amjad, N.S.; Hasnain, A.; Yameen, B.; Tufail, M.; et al. Analysis of Synthetic Food Colors and Food Preservatives Inducing Genotoxicity in Garlic (Allium sativum L.) Root Tip Cells. Pol. J. Environ. Stud. 2025. [Google Scholar] [CrossRef] [PubMed]
- Tianli, Y.; Jiangbo, Z.; Yahong, Y. Spoilage by Alicyclobacillus bacteria in juice and beverage products: Chemical, physical, and combined control methods. Compr. Rev. Food Sci. Food Saf. 2014, 13, 771–797. [Google Scholar] [CrossRef]
- Bajpai, V.K.; Shukla, S.; Kang, S.C. Chemical composition and antifungal activity of essential oil and various extracts of Silene armeria L. Bioresour. Technol. 2008, 99, 8903–8908. [Google Scholar]
- Cigerci, I.H.; Cenkci, S.; Kargıoglu, M.; Konuk, M. Genotoxicity of Thermopsis turcica on Allium cepa L. roots revealed by alkaline comet and random amplified polymorphic DNA assays. Cytotechnology 2016, 68, 829–838. [Google Scholar] [CrossRef] [PubMed]
- World Health Organization (WHO); Food and Agriculture Organization (FAO). Global Situation of Pesticide Management in Agriculture and Public Health: Report of a 2018 WHO–FAO Survey; FAO: Rome, Italy, 2019. [Google Scholar]
- Liu, J.; Li, X.; Jia, Z.; Zhang, T.; Wang, X. Effect of benzoic acid on soil microbial communities associated with soilborne peanut diseases. Appl. Soil Ecol. 2017, 110, 34–42. [Google Scholar] [CrossRef]
- Ren, J.; Li, Z.; Li, X.; Yang, L.; Bu, Z.; Wu, Y.; Li, Y.; Zhang, S.; Meng, X. Exploring the mechanisms of the antioxidants BHA, BHT, and TBHQ in hepatotoxicity, nephrotoxicity, and neurotoxicity from the perspective of network toxicology. Foods 2025, 14, 1095. [Google Scholar] [CrossRef] [PubMed]
- Bekir, S.; Zoghlami, R.I.; Boudabbous, K.; Khelil, M.N.; Moussa, M.; Ghrib, R.; Nahdi, O.; Trabelsi, E.; Bousnina, H. Soil physicochemical changes as modulated by treated wastewater after medium- and long-term irrigations: A case study from Tunisia. Agriculture 2022, 12, 2139. [Google Scholar] [CrossRef]
- Ashie, W.B.; Awewomom, J.; Ettey, E.N.Y.O.; Opoku, F.; Akoto, O. Assessment of irrigation water quality for vegetable farming in peri-urban Kumasi. Heliyon 2024, 10, e24913. [Google Scholar] [CrossRef]
- Vymazal, J. Constructed wetlands for treatment of industrial wastewaters: A review. Ecol. Eng. 2014, 73, 724–751. [Google Scholar] [CrossRef]
- Pandey, R.M.; Upadhyay, S.K. Food Additive; Division of Genetics, Plant Breeding & Agrotechnology, National Botanical Research Institute: Lucknow, India, 2012; p. 34455. [Google Scholar]
- Farheen, J.; Mansoor, S.; Abid, M. Genotoxic appraisal of widely used food colour additives on model plant Allium cepa root tip cells. Int. J. Innov. Sci. 2021, 7, 174. [Google Scholar]
- Pandey, H.; Kumar, V.; Roy, B.K. Assessment of genotoxicity of some common food preservatives using Allium cepa L. as a test plant. Toxicol. Rep. 2014, 1, 300–308. [Google Scholar] [CrossRef]
- Kumar, G.; Pandey, S.; Tiwari, N.K.; Pandey, P. Analysis of genotoxicity induced by food dyes in root meristem of Salvia hispanica L. Open J. Genet. 2022, 12, 1–10. [Google Scholar] [CrossRef]
- Dey, S.; Nagababu, B.H. Applications of food color and bio-preservatives in food and their effects on human health. Food Chem. Adv. 2022, 1, 100019. [Google Scholar] [CrossRef]
- Dutta, J.; Ahmad, A.; Singh, J. Study of industrial effluents–induced genotoxicity on Allium cepa L. Caryologia 2018, 71, 139–145. [Google Scholar] [CrossRef]
- Fetaw, A.S.; Haile, M.Z.; Washe, A.P. Assessing the Chemical Composition of Wastewater Released from Hawassa Castel Brewery Plant and its Impact on Groundwater. J. Waste Manag. Xenobiot. 2021, 4, 1–15. [Google Scholar]
- Yameen, B.; Abbas, W.; Awan, M.U.F.; Tahir, A.; Mohammad, S.; Shoib, M. rbcL marker-based identification and phylogenetic analysis of Kasuri methi (Trigonella foenum-graecum L.): A native plant of Kasur District, Punjab, Pakistan. Genet. Resour. Crop Evol. 2025, 72, 1663–1673. [Google Scholar] [CrossRef]
- Ungureanu, N.; Vlăduț, V.; Voicu, G. Water scarcity and wastewater reuse in crop irrigation. Sustainability 2020, 12, 9055. [Google Scholar] [CrossRef]
- Ensink, J.; Mahmood, T.; van der Hoek, W.; Raschid-Sally, L.; Amerasinghe, F. A nationwide assessment of wastewater use in Pakistan: An obscure activity or a vitally important one? Water Policy 2004, 6, 197–206. [Google Scholar] [CrossRef]
- Smagin, A.V.; Smagina, M.V.; Sadovnikova, N.B. Biological oxygen demand in soils and litters. Eurasian Soil Sci. 2018, 51, 296–308. [Google Scholar] [CrossRef]
- Ditzler, C.A.; Tugel, A.J. Soil quality field tools: Experiences of USDA-NRCS Soil Quality Institute. Agron. J. 2002, 94, 33–38. [Google Scholar] [CrossRef]
- Ohimain, E.I.; Izah, S.C.; Jenakumo, N. Physicochemical and microbial screening of palm oil mill effluents for amylase production. Greener J. Biol. Sci. 2013, 3, 307–318. [Google Scholar] [CrossRef]
- Ibrahim, E.A. Effect of citric acid on phytoextraction potential of Cucurbita pepo, Lagenaria siceraria, and Raphanus sativus plants exposed to multi-metal stress. Sci. Rep. 2023, 13, 13070. [Google Scholar] [CrossRef]
- Samuel, O.B.; Osuala, F.I.; Odeigah, P.G. Cytogenotoxicity evaluation of two industrial effluents using Allium cepa assay. Afr. J. Environ. Sci. Technol. 2010, 4, 021–027. [Google Scholar]
- Alias, C.; Zerbini, I.; Zani, C.; Feretti, D. The Allium cepa comet assay for environmental sample assessment: A scoping review. Mutagenesis 2024, 39, 219–237. [Google Scholar] [CrossRef] [PubMed]
- Yildiz, M.; Ciğerci, I.H.; Konuk, M.; Fidan, A.F.; Terzi, H. Determination of genotoxic effects of copper sulphate and cobalt chloride in Allium cepa root cells by chromosome aberration and comet assays. Chemosphere 2009, 75, 934–938. [Google Scholar] [CrossRef]
- Amit, S.K.; Uddin, M.M.; Rahman, R.; Islam, S.M.R. A review on mechanisms and commercial aspects of food preservation and processing. Agric. Food Secur. 2017, 6, 51. [Google Scholar] [CrossRef]
- Costea, M.A.; Rosan, C.A.; Laslo, V.; Agud, E.; Purcarea, C.; Vicas, S.I. The comet assay as a sustainable method for evaluating the genotoxicity caused by the soluble fraction derived from sewage sludge on diverse cell types, including lymphocytes, coelomocytes, and Allium cepa L. cells. Sustainability 2024, 16, 457. [Google Scholar] [CrossRef]





| Parameters | Average |
|---|---|
| Temperature (°C) | 27.97 ± 0.61 |
| pH | 5.20 ± 0.50 |
| COD (mg/L) | 499 ± 305.03 |
| BOD (mg/L) | 350.00 ± 224.76 |
| EC (µS/cm) | 1170.02 ± 706.75 |
| TDS (mg/L) | 575.53 ± 347.97 |
| 3rd Day | Control | 20% | 40% | 60% | 80% | 100% |
|---|---|---|---|---|---|---|
| Head DNA (%) | 99.93 ± 0.07 | 2 ± 0.28 | 0 ± 0 | 17.67 ± 0.44 | 25.27 ± 0.38 | 3.30 ± 0.23 |
| Tail DNA (%) | 0.06 ± 0.05 | 97.99 ± 0.34 | 100 ± 0.23 | 82.32 ± 0.47 | 74.72 ± 0.47 | 96.69 ± 0.34 |
| Olive movement (a.u.) | 0.006 ± 0.001 | 7.83 ± 0.30 | 15 ± 0.46 | 37.87 ± 0.56 | 29.88 ± 0.45 | 58.01 ± 0.64 |
| Tail moment (a.u.) | 0 ±0 | 13.71 ± 0.46 | 29 ± 0.51 | 60.09 ± 0.56 | 59.77 ± 0.56 | 108.3 ± 0.80 |
| Tail length (µm) | 0 ± 0 | 14 ± 0.57 | 29 ± 0.57 | 73 ± 1.15 | 80 ± 1.15 | 112 ± 1.13 |
| Comet length (µm) | 31 ± 1.13 | 24 ± 1.14 | 37 ± 1.25 | 103 ± 1.73 | 104 ± 1.19 | 136 ± 1.12 |
| 5th Day | Control | 20% | 40% | 60% | 80% | 100% |
|---|---|---|---|---|---|---|
| Head DNA (%) | 96.54 ± 0.28 | 67.37 ± 0.57 | 1.57 ± 0.17 | 8.35 ± 0.40 | 12.83 ± 0.40 | 2.61 ± 0.17 |
| Tail DNA (%) | 3.45 ± 0.28 | 32.62 ± 0.59 | 98.42 ± 0.23 | 91.64 ± 0.46 | 87.16 ± 0.51 | 97.38 ± 0.23 |
| Olive movement (a.u.) | 0.13 ± 0.01 | 5.87 ± 0.23 | 14.76 ± 0.34 | 41.76 ± 0.57 | 42.71 ± 0.57 | 65.24 ± 0.69 |
| Tail moment (a.u.) | 0 ± 0 | 4.24 ± 0.28 | 29.52 ± 0.57 | 74.23 ± 0.86 | 72.34 ± 0.80 | 121.72 ± 1.15 |
| Tail length (µm) | 0 ± 0 | 13 ± 0.57 | 30 ± 0.57 | 81 ± 1.15 | 83 ± 1.15 | 125 ± 1.73 |
| Comet length (µm) | 30 ± 1.15 | 45 ± 1.73 | 34 ± 1.15 | 115 ± 2.30 | 127 ± 2.30 | 149 ± 2.88 |
| 7th Day | Control | 20% | 40% | 60% | 80% | 100% |
|---|---|---|---|---|---|---|
| Head DNA (%) | 92.52 ± 0.34 | 0.13 ± 0.01 | 5.26 ± 0.23 | 10.81 ± 0.34 | 2.89 ± 0.17 | 2.28 ± 0.17 |
| Tail DNA (%) | 7.47 ± 0.34 | 99.86 ± 0.28 | 94.73 ± 0.34 | 89.18 ± 0.46 | 97.10 ± 0.34 | 97.71 ± 0.28 |
| Olive movement (a.u.) | 0.37 ± 0.02 | 8.98 ± 0.25 | 12.31 ± 0.34 | 46.37 ± 0.92 | 54.37 ± 0.63 | 74.26 ± 0.69 |
| Tail movement (a.u.) | 0 ± 0 | 19.9 ± 0.57 | 38.8 ± 0.57 | 77.59 ± 0.82 | 88.36 ± 0.92 | 150.48 ± 1.15 |
| Tail length (µm) | 0 ± 0 | 20 ± 0.57 | 41 ± 0.54 | 87 ± 1.15 | 91 ± 1.15 | 154 ± 1.73 |
| Comet length (µm) | 29 ± 0.57 | 24 ± 0.56 | 47 ± 1.15 | 133 ± 1.72 | 111 ± 1.73 | 182 ± 2.30 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Tufail, M.; Luqman, M.; Mehmood, Z.; Abbas, W.; Iqbal, M.; Shah, H.; Awan, I.F.; Sana, N.; John, A.; Rafiq, S.; et al. Impact of Food Processing Industry Wastewater on Root Growth and DNA Damage in Allium cepa L. as Assessed by the Comet Assay. Water 2026, 18, 435. https://doi.org/10.3390/w18030435
Tufail M, Luqman M, Mehmood Z, Abbas W, Iqbal M, Shah H, Awan IF, Sana N, John A, Rafiq S, et al. Impact of Food Processing Industry Wastewater on Root Growth and DNA Damage in Allium cepa L. as Assessed by the Comet Assay. Water. 2026; 18(3):435. https://doi.org/10.3390/w18030435
Chicago/Turabian StyleTufail, Matiba, Muhammad Luqman, Zahid Mehmood, Wasim Abbas, Maryam Iqbal, Harma Shah, Imran Farooq Awan, Noor Sana, Arooba John, Samra Rafiq, and et al. 2026. "Impact of Food Processing Industry Wastewater on Root Growth and DNA Damage in Allium cepa L. as Assessed by the Comet Assay" Water 18, no. 3: 435. https://doi.org/10.3390/w18030435
APA StyleTufail, M., Luqman, M., Mehmood, Z., Abbas, W., Iqbal, M., Shah, H., Awan, I. F., Sana, N., John, A., Rafiq, S., Riaz, A., Ahmad, A., Tahir, A., & Awan, M. U. F. (2026). Impact of Food Processing Industry Wastewater on Root Growth and DNA Damage in Allium cepa L. as Assessed by the Comet Assay. Water, 18(3), 435. https://doi.org/10.3390/w18030435

