Next—Generation Diagnostic Technologies for Dengue Virus Detection: Microfluidics, Biosensing, CRISPR, and AI Approaches
Abstract
1. Introduction
2. Physiology
3. Dengue Detection Techniques and Recent Advances
3.1. Cell Culture Isolation
3.2. Genomic Detection
3.3. Serological Testing
3.4. Biosensors
3.4.1. Optical Biosensors
Colorimetric Biosensors
Plasmonic Biosensors
Raman–Based Biosensors
Photonic Biosensors
3.4.2. Electrochemical Biosensors
3.4.3. Microwave Based Sensors
3.4.4. Other Biosensors
Microfluidic Biosensors
CRISPR Based Assays
Artificial Intelligence
4. Future Outlooks and Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| TLA | Three letter acronyms |
| DENV | Dengue Virus |
| NS1 | Non–structural protein 1 |
| PCR | Polymerase chain reaction |
| RT–PCR | Reverse transcriptase–polymerase chain reaction |
| RT–qPCR | Real–time quantitative RT–PCR |
| LOD | Limit of Detection |
| ELISA | Enzyme–linked immunosorbent assays |
| LFA | Lateral Flow Assays |
| AuNPs | Gold nanoparticles |
| POC | Point–of–Care |
| IFA | Immunofluorescence based assays |
| SPR | Surface plasmon resonance |
| LSPR | Localized Surface plasmon resonance |
| SERS | Surface–enhanced Raman scattering |
| DPV | Differential pulse voltammetry |
| EIS | Electrochemical impedance spectroscopy |
| SRR | Split ring resonator |
| CSRR | Complementary split ring resonator |
| RT–LAMP | Reverse transcriptase—loop mediated isothermal amplification |
| CRISPR | Clustered regularly interspaced short palindromic repeats |
| SHERLOCK | Specific High–sensitivity Enzymatic Reporter un–LOCKing |
| DETECTR | DNA Endonuclease—Targeted CRISPR Trans Reporter |
| AI | Artificial Intelligence |
| ML | Machine Learning |
| DL | Deep learning |
| CBC | Complete Blood Count |
| SVM | Support Vector Machine |
| ETC | Extra Tree Classifier |
| ANN | Artificial Neural Network |
| AUC | Area Under Curve |
| DNN | Deep neural network |
| LR | Logistic regression |
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| Analyte | Detection Biofluids | Description | Concentration Range * |
|---|---|---|---|
| NS1 Antigen | Serum, plasma, whole blood | Viral Non-structural protein released during early infection | ~1–50 ng/mL |
| DENV–2 NS1 | Serum, plasma | Serotype—specific NS1 antigen | ~1–30 ng/mL |
| Viral RNA | Serum, plasma, whole blood | DENV Genomic RNA | ~102–106 copies/mL |
| Anti—DENV IgM | Serum, plasma | Host Antibody released following first infection | Detected after the 4th or 5th day after the onset of infection symptoms |
| Anti—DENV IgG | Serum, plasma | Host Anitbody release following second infection | Elevated after secondary infections |
| DENV RNA in Urine | Urine | Viral RNA detected at later stages of infection | ~101–104 copies/mL |
| Method of Detection | Advantages | Disadvantages | Example(s) |
|---|---|---|---|
| Cell Culture Isolation | Reliable and accurate. Different serotypes can be identified by combining them with molecular or immunological assays [36]. | It takes a long time to obtain results. Skilled personnel are required to perform the procedure. It should be coupled with other equipment to obtain meaningful readings. Cannot tell if the patient was previously infected with DENV or not [35,36]. | C6/36 cell culture [22]. |
| Genomic Detection (PCR) | Results can be obtained in less than 24 h [37]. It has a very high specificity and sensitivity [38,39]. It can be observed in real–time [40]. | Cross–contamination can result in false–positives. It may not be available in poor areas because it requires expensive equipment to perform tests [41]. Sensitivity may decrease over time [28]. | RT–PCR, RT–qPCR, and plasmonic PCR [30]. |
| Serological Testing | Easy to perform. Can tell if a patient has been infected before [42]. It is very accurate in confirming infection. Results are rapidly achieved [43]. | The type of flavivirus infection cannot be identified because of the same antibodies released. Low IgM levels may not properly indicate whether a patient was infected before and by which flavivirus [44]. | LFA, immunofluorescence assays, and ELISA [23,31,32,33]. |
| Biosensor Types | Advantages | Limitations | Example(s) |
|---|---|---|---|
| Optical Biosensors | Specific, sensitive, rapid, and can be performed in real–time [46]. | Not always portable, and may require complex equipment [47]. | Colorimetry, surface plasmon resonance, surface enhanced Raman spectroscopy, photonic crystals. |
| Electrochemical Biosensors | Requires a small sample volume, is inexpensive, easy to use, and has high sensitivity. | Those sensors suffer from surface fouling, signal drift, and susceptibility to interference [48]. | Cyclic Voltammetry, (DPV), chronoamperometry, amperometry, and EIS |
| Microwave–based Biosensors | High sensitivity, portable, lightweight, and has a wide range of operating frequencies. | Fabrication must be performed carefully and humidity, temperature, and the frequency range used can affect the results [49]. | SRRs. |
| Microfluidics | Uses a smaller sample quantity, is inexpensive, and has the potential to be applied in point–of–care diagnosis [50]. | Lab–on–chip modules can suffer from clogging due to their small tube and compartment sizes, and access to 3D printing and materials is needed [51]. | LFA, lab–on–chip. |
| CRISPR Based Biosensors | Fast, state–of–the–art technology with ultra–high sensitivity [52]. | Binding may occur at the wrong sites, leading to unwanted modifications [53]. | CRISPR/Cpf1, CRISPR/Cas9, CRISPR/Cas12a, CRISPR/Cas13a. |
| Method of Detection | Advantages | Disadvantages |
|---|---|---|
| Colorimetry | Simple to use, quick, and has acceptable specificity and sensitivity [91]. | May require large concentrations, has a limited wavelength measurement range, and cannot analyze colorless substances [92]. |
| SPR | Small sample size is required, real–time detection capability, and quick [93]. | Portability of components, low sensitivity, sophisticated setup, and wavelength of incident light should be considered [94]. |
| SERS | Provides highly specific signals with strong amplification and rapid detection capability | Substrate reuse is challenging, expensive, and poorly quantified [95]. |
| Photonic Crystals | Efficient, can precisely control wavelength, and are compact, and sensitive [96]. | Complex design, incomplete photonic bandgaps, and careful synthesis is needed to avoid incompatibility [97]. |
| DPV | Rapid, inexpensive, and has superior sensitivity [98]. | It is complex to set up and difficult to analyze the output. |
| Amperometry | High selectivity and sensitivity, is inexpensive, and has a low detection limit. | Long response time, sample preparation, and a continuous power supply is required [99]. |
| EIS | Cost–effective, highly sensitive, and requires a low sample volume [100]. | May damage samples, requires skilled personnel for preprocessing. |
| SRR | High sensitivity, portability, dielectric permittivity can be observed, and repeatability is possible. | Environmental changes may alter the output, a complex fabrication process is required, and losses may occur [76]. |
| Microfluidics | Fewer samples are needed, and it has high sensitivity, low cost, and fewer reagents can be applied in POC [101]. | Their fabrication may be expensive, suffer from clogging, and have limited sensitivity [49]. |
| LFA | Easy, user–friendly, cheap, and fast [102]. | The results are qualitative, with risk of cross–contamination and limited sensitivity to design. |
| CRISPR | Extremely sensitive, inexpensive, and rapid [52]. | Unintended modifications and ethical concerns [53]. |
| Reference | Algorithm(s) | Dataset Size | Dataset Type | Description | Precision | Recall | Accuracy |
|---|---|---|---|---|---|---|---|
| [103] | Stacking Ensemble | 320 | CBC | Stacking ensemble classifier (LightGBM, XGBoost, Logistic Regression, and Multilayer perceptron learners). | 0.9773 | 0.9545 | 0.9688 |
| [104] | SVM | 300 | Demographic information, Serological tests, and CBC |
Radial basis function kernel in Support Vector Machine
(RBF—SVM). | 0.7200 | 0.9700 | 0.7140 |
| [105] | ETC | 6694 | Clinically reported symptoms | Five different efficient machine learning techniques were implemented and ETC was the highest–performing in all metrics. | 0.9918 | 0.9912 | 0.9912 |
| [106] | LogitBoost | 75 | Clinically reported symptoms and blood tests | An Ensemble classifier was applied to LogitBoost. | 0.9500 | 0.9000 | 0.9200 |
| [107] | SVM, ANN | 21,157 | Clinically reported symptoms | SVM had the highest sensitivity but ANN overall had better metrics based on AUC. The metrics listed are for the ANN model. | 0.8647 | 0.9291 | 0.8647 |
| [108] | DNN, LR | 4894 | Clinically reported symptoms and CBC | DNN had the best overall AUC, whereas LR showed the highest sensitivity. | N/A * | N/A | N/A |
| [109] | XGBoost | 1148 | CBC | Data was collected daily until discharge or death. XGBoost had the highest AUC. The study focused in the need for blood transfusion. | 0.8210 | 0.6320 | 0.8720 |
| [110] | DENV–TLDNN | 2000 | Raman spectra of blood sera | Transfer–Learning Resnet101. | 0.9610 | N/A | 0.9600 |
| [111] | Random Forest | 400,202 | Meteorological data and binary dengue infection (yes, no) | The study focused on the regional spread of dengue and its misdiagnosis in epidemic regions. | 0.7306 | 0.9900 | 0.8500 |
| Reference | Year of Publication | Method of Detection | Target Analyte | Sample Matrix | Limit of Detection (LOD) | Novel Work | Performance Metrics |
|---|---|---|---|---|---|---|---|
| [63] | 2017 | SERS | NS1 | Serum | 7.67 ng/mL | Multiplexed lateral flow assay with SERS–encoded gold nanostars. | High sensitivity was reported. |
| [72] | 2017 | Amperometry | ssDNA | Synthetic DENV–2 DNA in buffered solutions | 17 nM | Cu2CdSnS4 quaternary alloy nanostructure biosensor deposited on O2/Si substrate. | Transduced current vs. DNA concentration: R2 = 0.5059 Calculated Sensitivity = 24.2 µA/nm cm−2 Standard deviation = 0.34 µA Limit of Quantification = 53.6 nM |
| [70] | 2018 | DPV | DNA | Synthetic DENV DNA in buffered solutions | 9.4 fM | gold nanoparticle nanocomposite (AuNP) and nitrogen, sulfur co–doped graphene quantum dots (N,S–GQDs) with fluorescence technique. | Concentration range = 10−14–10−6 M Can identify different serotypes |
| [62] | 2020 | SERS | NS1 | Blood serum | N/A | Surface–enhanced Raman spectroscopy was directly applied, and statistical analysis was performed using multivariate principal component analysis. | Variance and Cumulative percentages of the first and second principal components in PCA analysis. Enhancement Factor = 1.7 × 107 Reproducibility = 7.05% Acquisition time = 30 s |
| [71] | 2020 | Chronoamperometry | NS1 | NS1—Spiked serum samples | 0.38 ng/mL | Opto–electrochemical functionalization of a ruthenium bipyridine complex on the surface of graphene oxide immunoprobe. | Amperometric current percentage vs. NS1 concentration: Correlation coefficient = 0.9976 Sensitivity = 0.14 µA/ng mL−1 |
| [75] | 2020 | EIS | NS1 | buffer and NS1—Spiked serum | 0.33 ng/mL | A modified polyaniline–coated Glassy Carbon electrode was immobilized with DENV antibodies. | Concentration range = 1–100 ng/mL Calibration curve R2 = 0.997 Sensitivity (Slope) = 13.8% IPR/mL. ng−1 Stability < 5% Relative Standard Deviation = 1.9% (as a measure for reproducibility) |
| [60] | 2020 | LSPR | DENV E proteins | Diluted serum | 0.001 ng/mL | Localized surface plasmon resonance coupled with gold nanorods functionalized with DENV E proteins. | The sensitivity and specificity to ELISA were calculated for each DENV serotype; sensitivities of 80.2%, 59.5%, 71.6%, and 69.1% were achieved for DENV 1, DENV 2, DENV 3, and DENV 4, respectively. Calculated specificities of 93.7%, 93.0%, 85.5%, and 91.5% were obtained for DENV 1–4 serotypes. |
| [69] | 2021 | DPV | NS1 | Serum and urine | 6.8 ng/mL | Nanostructured thin film carbon nanotube–ethylenediamine label–free immunosensor. | Linear range = 20–800 ng/mL R2 = 0.9975 p < 0.01 Reproducibility = 3.0% |
| [88] | 2021 | CRISPR/Cpf1 | RNA | Synthetic dengue viral RNA in buffered solutions | 100 fM | Electrochemical CRISPR reaction–based biosensor conjugating methylene blue to amplify the signal with AuNPs. | Electrochemical signal vs. DNA concentration: R2 = 0.9848 at 95% confidence level Detection time = ~30 min |
| [90] | 2021 | CRISPR/Cas13a | RNA | Synthetic Dengue viral RNA in buffer | 0.78 fM | Electrochemical sensor with hairpin assembly on probe surface that activates a CRISPR reaction when target RNA is detected. | Linear Detection Range = 5fM–50 nM Peak current vs. DENV–1 concentration (Log): R2 = 0.9969 |
| [58] | 2022 | SPR | NS1 | Blood serum | 60 ng/mL | Alkanethiol–based self–assembled monolayer for anti–NSI antibody binding on the surface of unclad fiber coated with silver. | Sensitivity at lowest concentration is 54.7 nm/(µg/mL) |
| [61] | 2022 | SPR | NS1 mAb | Simulated sensing medium | N/A | SPR properties together with gold/EDC–NHS/IgG components. | N/A |
| [66] | 2022 | Photonic Crystals | Plasma, Platelets. and Hemoglobin | Blood refractive index variation representing dengue—infected blood | 9.3 × 10−3 RIU | 1D photonic crystals made of a [(Si/LiF)6D(LiF/Si)6] layer with Defect layer being a function of plasma, platelets and hemoglobin. | Q Factor = 1569 Sensitivity = 203.09 nm/RIU |
| [74] | 2022 | EIS | NS1 | Serum samples on a single chip | 1.17 ng/mL | Gold surface electrodes functionalized by a self–assembled biorecognition monolayer. | Concentration range = 15.62–500 ng/mL Percent change impedance vs. NS1concentration (Log): R2 = 0.990 |
| [84] | 2022 | SRR | Blood | Blood—mimicking samples with controlled dielectric properties | N/A | Double–layer metamaterial–based resonator with a replaceable top layer that can detect the dielectric properties of blood samples operating in the millimeter wave range. | Sensitivity = 0.325 GHz R2 = 0.9729 Substrate layer 1 thickness = 1.57 mm Substrate layer 2 thickness = 0.127 mm |
| [85] | 2022 | Microfluidics | RNA | Whole blood | N/A | Paper/polymer strip microfluidic biosensor utilizing nucleic acid isolation, isothermal amplification, and colorimetry. | Acquisition time of ~30 min A sensitivity and specificity of 95% and 100% were calculated for purified RNA and for blood serum, a sensitivity of 91% and a specificity of 100% was achieved. |
| [89] | 2022 | CRISPR/Cas12a | RNA | Synthetic viral DNA/RNA targets in buffer | 51 fM | Fluorescent detection of DENV RNA using CRISPR–based reaction to amplify the signal by target–triggered hybridization chain reaction. | Linear Detection Range = 1pM–10 nM Fluorescence intensity vs. DENV–1 RNA concentration (Log): R2 = 0.9962 Recovery test range = 92.4–106.7% Relative Standard Deviation = 3.1–6.8% |
| [55] | 2023 | Colorimetry | NS1 | Recombinant DENV–2 NS1–Spiked buffer and serum | 1.56 ng/mL | Thermochromic sheet temperature sensor coupled with a lateral flow assay. | Detection limit improved by up to 4 times compared to normal value of 6.25 ng/mL |
| [59] | 2023 | SPR | NS1 | Blood plasma, platelets, and hemoglobin | N/A | Sequential layering of the BK7 prism, silver, titanium disilicide, black phosphorus and sensing medium. | Maximum Sensitivity = 257.3 deg/RIU Quality Factor = 85.45 deg−1 Detection accuracy = 0.54RIU−1 |
| [78] | 2023 | SRR | Blood | Simulated dielectric environments | N/A | Metamaterial–based biosensor with four square split–ring resonators coupled with a graphene ring with absorption in the terahertz range. | Sensitivity = 1.7 THz/RIU Figure of Merit = 165.09 RIU−1 Q factor = 112.5 Substrate Thickness = 3 µm |
| [86] | 2023 | Microfluidics | IgG | Serum | 3.1 × 10−4 ng/mL | A surface–integrated microfluidic platform was fabricated using zinc oxide nanorods synthesized via a seed–assisted thermal technique. | Dynamic Detection Range = 3.1 × 103–3.1 × 10−4 ng/mL Detection time = ~15 min |
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El Kabbani, S.; Saleh, G. Next—Generation Diagnostic Technologies for Dengue Virus Detection: Microfluidics, Biosensing, CRISPR, and AI Approaches. Sensors 2026, 26, 145. https://doi.org/10.3390/s26010145
El Kabbani S, Saleh G. Next—Generation Diagnostic Technologies for Dengue Virus Detection: Microfluidics, Biosensing, CRISPR, and AI Approaches. Sensors. 2026; 26(1):145. https://doi.org/10.3390/s26010145
Chicago/Turabian StyleEl Kabbani, Salim, and Gameel Saleh. 2026. "Next—Generation Diagnostic Technologies for Dengue Virus Detection: Microfluidics, Biosensing, CRISPR, and AI Approaches" Sensors 26, no. 1: 145. https://doi.org/10.3390/s26010145
APA StyleEl Kabbani, S., & Saleh, G. (2026). Next—Generation Diagnostic Technologies for Dengue Virus Detection: Microfluidics, Biosensing, CRISPR, and AI Approaches. Sensors, 26(1), 145. https://doi.org/10.3390/s26010145

