Phylogenomic Insights of Mesentotoma Salmon, 1942 (Collembola: Entomobryidae: Entomobryinae): First Mitogenome and Phylogenetic Hypothesis, Taxonomic Notes, and Description of Two New Brazilian Species †
Abstract
1. Introduction
2. Materials and Methods
2.1. Sampling, DNA Extraction, and Sequencing
2.2. Mitogenome Assembly and Annotation
2.3. Phylogenetic Analyses
| Species | Subfamily | Country | A.N. | Source | |
|---|---|---|---|---|---|
| 1 | Lepidocyrtus fimetarius Gisin, 1964 [48] | Lepidocyrtinae | China | NC047189.1 | [55] |
| 2 | Seira atrolutea (Arlé, 1939) [49] | Seirinae | Brazil | MF716602.1 | [32] |
| 3 | 1 Coecobrya sp. | Entomobryinae | China | OK037064.1 | [33] |
| 4 | 1 Entomobrya cf. arborea | Entomobryinae | Germany | SRR22681213 | [35] |
| 5 | 1 Entomobrya corticalis (Nicolet, 1842) [56] | Entomobryinae | Germany | SRR17308025 | [57] |
| 6 | 1 Entomobrya sp. | Entomobryinae | Brazil | MF716608.1 | [32] |
| 7 | 1 Entomobrya multifasciata (Tullberg, 1871) [58] | Entomobryinae | Germany | SRR17308065 | [35] |
| 8 | 1 Entomobrya muscorum (Nicolet, 1842) [56] | Entomobryinae | Germany | SRR22586361 | [35] |
| 9 | 1 Entomobrya nicoleti (Lubbock, 1870) [59] | Entomobryinae | Germany | SRR22681196 | [35] |
| 10 | 1 Entomobrya nivalis (Linnæus, 1758) [60] | Entomobryinae | Germany | SRR21208386 | [35] |
| 11 | 1 Entomobrya proxima Folsom, 1924 [61] | Entomobryinae | China | SRR15910091 | [62] |
| 12 | 1 Homidia koreana Lee & Lee, 1981 [63] | Entomobryinae | South Korea | MZ934725.1 | [64] |
| 13 | 1 Homidia pseudokoreana Lee & Park, 2024 [65] | Entomobryinae | South Korea | OQ852481.1 | [35] |
| 14 | 1 Homidia socia Denis, 1924 [11] | Entomobryinae | China | MN480464.1 | [66] |
| 15 | 2 Lepidocyrtoides caeruleomaculatus Cipola & Bellini, 2017 [16] | Entomobryinae | Brazil | MF716618.1 | [32] |
| 16 | 2 Lepidocyrtoides sp. | Entomobryinae | Brazil | MF716598.1 | [32] |
| 17 | 2 Lepidosira neotropicalis Nunes & Bellini, 2019 [67] | Entomobryinae | Brazil | MF716603.1 | [67] |
| 18 | 1 Mesentotoma multicirculata sp. nov. | Entomobryinae | Brazil | PX395442 | This study |
| 19 | 1 Sinella curviseta Brook, 1882 [68] | Entomobryinae | China | NC042755.1 | [69] |
| 20 | 2 Sinhomidia bicolor (Yosii, 1965) [70] | Entomobryinae | China | OK037065.1 | [34] |
| 21 | 2 Willowsia buski (Lubbock, 1870) [59] | Entomobryinae | Germany | SRR22681191 | [57] |
| 22 | 2 Willowsia jacobsoni (Börner, 1913) [71] | Entomobryinae | China | OQ434880.1 | [20] |
| 23 | 2 Willowsia japonica (Folsom, 1898) [72] | Entomobryinae | China | MT906654.1 | [33] |
| 24 | 2 Willowsia nigromaculata (Lubbock, 1873) [73] | Entomobryinae | Germany | SRR22681218 | [57] |
2.4. Morphological Description
3. Results
3.1. Mitochondrial Genome Features
3.2. Phylogenetic Placement of Mesentotoma
3.3. Taxonomy
Type Species
3.4. Diagnosis of Genus
3.5. Remarks
3.6. Nomenclatural Acts for Tropical Species of Mesentotoma
3.6.1. Mesentotoma depressa (Marlier, 1945) [36] comb. nov.
3.6.2. Mesentotoma grassei (Delamare, 1952) [94] comb. nov.
3.6.3. Mesentotoma philippinica (Gapud, 1971) [95] comb. nov.
3.6.4. Mesentotoma pseudocoeruleopicta (Delamare, 1952) [94] comb. nov.
3.6.5. Mesentotoma tranvercyana Viana & Cipola nom. nov., comb. nov.
Nomenclatural Act
Etymology
3.7. New Species from Brazil
3.7.1. Mesentotoma multicirculata sp. nov. Viana & Cipola










3.7.2. Mesentotoma noronhaensis sp. nov. Viana & Cipola






3.7.3. Remarks
3.8. Key to Tropical Species of Mesentotoma
- Unguis ai tooth present (Figure 12H) … 2
- -
- Unguis ai tooth absent (Figure 18E) … 5
- 2.
- Mucro proximal tooth subequal (Figure 13E) … 3
- -
- Mucro proximal tooth shorter than the distal one (Figure 19F); Ivory Coast (Figure 20) … M. grassei (Delamare, 1952) [94] comb. nov.
- 3.
- Th II to Abd VI only with normal mac or with some slightly wider mic (Figures 4, 10, 11, and 17); unguiculus III ai lamella acuminate (Figures 12H and 18E) … 4
- -
- 4.
- Unguiculus III pe lamella serrated (Figure 12H); Brazil (Figure 20) … M. multicirculata sp. nov.
- -
- Unguiculus III pe lamella smooth (Figure 18E); Ivory Coast (Figure 20) … M. pseudocoeruleopicta comb. nov.
- 5.
- Head dorsally without central pigments; body depigmented or only bd III–IV with thin transversal bands (Figure 14); unguiculus slim as “knife” (Figure 18E) … 6.
- -
- Head with diffuse pigments; Th II all pigmented, distal half of Th II to Abd IV pigmented; unguiculus normal (see Marlier [36] p. 254); Congo (Figure 20) … M. tranvercyana nom. nov., comb. nov.
- 6.
- -
- Abd II–VI, respectively, with one, one, two, one, and one transversal band (Figure 14); unguis b.t. larger than m.t. in length (Figure 18E); mucro proximal tooth smaller than the distal one (Figure 19F); Fernando de Noronha Island (Figure 20) … M. noronhaensis sp. nov.
3.9. Distribution and Habitat of Tropical Species of Mesentotoma

| Species | ||||||||
|---|---|---|---|---|---|---|---|---|
| M. depressa | M. grassei | M. multicirculata | M. noronhaensis | M. philippinica | M. pseudocoeruleopicta | M. tranvercyana | ||
| comb. nov. | comb. nov. | sp. nov. | sp. nov. | comb. nov. | comb. nov. | nom. nov., comb. nov. | ||
| [36] | [94] | [95] | [94] | [36] | ||||
| Characteristics | Congo | Ivory Coast | Brazil | Brazil | Philippines | Ivory Coast | Congo | |
| Body color pattern | dorsal head | – | irregular spots | irregular spot | lateral band | lateral band | irregular spots | diffuse pigments |
| Th II–Abd I | – | irregular spots | depigmented areas | lateral band | lateral band | completely | diffuse pigments | |
| Abd II | – | irregular spots | depigmented areas | one transversal band (+/–) | one transversal band | completely | diffuse pigments | |
| Abd III | – | irregular spots | depigmented areas | one transversal band | one transversal band | completely | diffuse pigments | |
| Abd IV | – | irregular spots | anteriorly depigmented | two transversal bands | anteriorly depigmented | anteriorly depigmented | anteriorly depigmented | |
| Ant IV apical bulb | ? | ? | bilobed | unilobed | bilobed | ? | ? | |
| Ant I subdivide | ? | ? | + (–) | – | ? | ? | ? | |
| Prelabral chaetae | ? | ? | S | C gently | S | ? | ? | |
| Head dorsal mac | ‘M’ | ? | ? | 1 | 2 | ? | ? | ? |
| ‘S’ | ? | ? | 1 | 2 | ? | ? | ? | |
| ‘Ps–Pe’ | ? | ? | 8 | 11 | ? | ? | ? | |
| Labral papillae projections | inner | ? | ? | 3 | 3 | 3–4 | ? | ? |
| outer | ? | ? | 3 | 2–3 | 3–4 | ? | ? | |
| Head postlabial chaetotaxy | X, X2 | ? | ? | – | + | ? | ? | ? |
| Th II mac | a1?, m5 | ? | ? | – | + | ? | ? | ? |
| p2–4 | ? | ? | – | + | ? | ? | ? | |
| Th III mac | p2, p5 | ? | ? | – | + | ? | ? | ? |
| Abd I mac | p5 | ? | ? | + | – | ? | ? | ? |
| Abd III mac | am6 | ? | ? | + | – | ? | ? | ? |
| Abd IV outer mac | outer | ? | ? | 13 | 16 | ? | ? | ? |
| Th II-Abd VI foliate-type chaetae in males | ? | ? | – | – | + | ? | ? | |
| Ratio unguis: tenent hairs | u = t | ? | u = t | t > u | t >/= u | t > u | t > u | |
| Unguis III inner tooth | ratio | b.t. = m.t. | b.t. = m.t. > a.t. | b.t. = m.t. > a.t. | b.t. > m.t. | b.t. > m.t. > a.t. | b.t. > m.t. > a.t. | b.t. > m.t. |
| b.t. | 1/2 | 1/3 | 1/2 | 1/3 | 1/2 | 1/2< | 1/2 | |
| m.t. | 3/4 | 3/4 | 3/4 | 2/3 | ¾ | 3/4 | 4/5 | |
| a.t. | – | 6/7 | 7/8 | – | 9/10 | 7/8 | – | |
| Unguiculus III lamellae | inner (ai) | acuminate | acuminate | acuminate | acuminate | slightly truncate | acuminate | acuminate |
| outer (pe) | smooth | ? | serrated | smooth | smooth | smooth | smooth | |
| Collophore mac | anterior | ? | ? | 3–4 | 2 | ? | ? | ? |
| Number of male genital papillae | ? | ? | 7 | 6 | 8 | ? | ? | |
| Circumgenital chaetae | number | ? | ? | 8 + 1 (3 blunt) | 7 + 1 (3 blunt) | 8 + 1 (2 blunt) | ? | ? |
| shaped | ? | ? | 3 lanceolate, 1 pin, | 3 conical and | 7 + 1 truncate and | ? | ? | |
| ? | ? | 4 club, 1 finger | 4 + 1 finger-shape | 1 finger-shape | ? | ? | ||
| Mucro teeth size | subequal | distal tooth larger | subequal | distal tooth larger | subequal | subequal | subequal | |
4. Discussion
4.1. Diversity and Morphological Variations Among Tropical Species
4.2. Morphological Patterns and Atypical Characters
4.3. Phylogenetic Evidence, Homoplasies, and Perspectives
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| Abd | abdominal segment(s) |
| Ant | antennal segment(s) |
| mac | macrochaeta(e) |
| psp | pseudopore(s) |
| sens | specialized ordinary chaeta(e) |
| Th | thoracic segment(s) |
| IO | interocular chaetae |
| f | frontal |
| pf | prefrontal |
| l | lateral |
| a.a. | apical appendage of labial papillae |
| b.c. | basal chaeta of maxillary palp |
| bs | basal appendages of sublobal plate |
| l.p. | lateral process of papilla E |
| lpc | labial proximal chaetae |
| t.a. | terminal appendage of the maxillary palp |
| b.t. | paired basal teeth |
| m.t. | unpaired median tooth |
| a.t. | unpaired apical tooth |
| ai | antero-internal lamella |
| ae | antero-external lamella |
| pi | postero-internal lamella |
| pe | postero-external lamella |
References
- Salmon, J.T. New genera and species of New Zealand Collembola. Rec. Dominion Mus. Wellingt. 1942, 1, 55–60. [Google Scholar]
- Zhang, F.; Deharveng, L. Systematic revision of Entomobryidae (Collembola) by integrating molecular and new morphological evidence. Zool. Scr. 2015, 44, 298–311. [Google Scholar] [CrossRef] [Scilit]
- Rondani, C. Entomobrya pro Degeeria Nic. In Dipterologiae Italicae Prodromus; Stocchi, A., Ed.; Parma, Italy, 1861; p. 40. [Google Scholar]
- Christiansen, K. The genus Mesentotoma (Collembola: Entomobryidae). Psyche 1956, 63, 14–20. [Google Scholar] [CrossRef] [Scilit]
- Christiansen, K.A.; Bellinger, P.F. Insects of Hawaii. Vol. 15. Collembola; University of Hawaii Press: Honolulu, HI, USA, 1992; p. 445. [Google Scholar]
- Christiansen, K.; Bellinger, P. The Collembola of North America North of the Rio Grande. Part 3: Entomobryidae; Grinnell College: Grinnell, IA, USA, 1998. [Google Scholar] [CrossRef] [Scilit]
- Jordana, R. Synopses of Palaearctic Collembola: Capbryinae & Entomobryini. Soil Org. 2012, 84, 1–390. [Google Scholar]
- Bacon, G.A. A new species of Collembola from Laguna Beach. J. Entomol. Zool. 1913, 5, 202–204. [Google Scholar]
- Denis, J.R. Report on Collembola. Mem. Conn. Acad. Arts Sci. 1936, 10, 261–282. [Google Scholar]
- Jacquemart, S. Collemboles nouveaux du Sahara. Bull. Inst. R. Sci. Nat. Belg. 1974, 49, 1–16. [Google Scholar]
- Denis, J.R. Sur les Collemboles du Muséum de Paris. Ann. Soc. Entomol. Fr. 1924, 93, 211–260. [Google Scholar] [CrossRef] [Scilit]
- Baquero, E.; Arbea, J.; Jordana, R. New species of Entomobryini from the Mediterranean Palaearctic. Soil Org. 2010, 82, 285–300. [Google Scholar]
- Checklist of the Collembola of the World. Available online: http://www.collembola.org (accessed on 30 September 2025).
- Cipola, N.G.; Oliveira, F.G.L. A new species of Campylothorax from the Brazilian Amazon. Zootaxa 2016, 4109, 487–495. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Cipola, N.G.; Morais, J.W.; Bellini, B.C. A new genus of Entomobryinae from the Brazilian Amazon. Zootaxa 2016, 4105, 261–273. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Morais, J.W.; Bellini, B.C. Discovery of Lepidocyrtoides from the New World. Zootaxa 2017, 4324, 201–248. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Morais, J.W.; Bellini, B.C. New subgenus and species of Lepidocyrtus from Amazon. Insect Syst. Evol. 2018, 50, 189–234. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Morais, J.W.; Bellini, B.C. Survey of Trogolaphysa of the Brazilian Amazon. Zootaxa 2022, 5093, 251–295. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Bellini, B.C.; Godeiro, N.N. Two new species of Seira from South America. Zootaxa 2025, 5620, 175–195. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Katz, A.D.; Bu, Y.; Godeiro, N.N. Systematics of Willowsia jacobsoni. Zootaxa 2025, 5604, 201–233. [Google Scholar] [CrossRef] [Scilit]
- Oliveira, F.G.L.; Cipola, N.G.; Almeida, E.A.B. Systematics and biogeography of Salina. Insect Syst. Evol. 2018, 51, 81–138. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Viana, S.S. Two new species of Lepidocyrtus (Fractocyrtus). Zootaxa 2023, 5369, 369–399. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Viana, S.S.; Morais, J.W.; Cipola, N.G. A new species of Entomobrya from Brazil. Zootaxa 2022, 5155, 261–279. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Viana, S.S.; Morais, J.W.; Cipola, N.G. Taxonomic revision of Entomobrya from the Brazilian Amazon. Zootaxa 2024, 5452, 1–110. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Zeppelini, D.; Queiroz, G.C.; Bellini, B.C.; Brito, R.A.; Oliveira, J.V.L.C.; Lopes, B.C.H.; Lima, E.C.A.; Ferreira, A.S.; Brito, N.P. Entomobryidae in Catálogo Taxonômico da Fauna do Brasil. Available online: http://fauna.jbrj.gov.br (accessed on 30 September 2025).
- Ridley, H.N. Thysanura and Collembola. Notes on the Zoology of Fernando de Noronha. Zool. J. Linn. Soc. 1890, 20, 473–570. [Google Scholar] [CrossRef] [Scilit]
- Palácios-Vargas, J.G.; Lima, E.C.A.; Zeppelini, D. A new species of Isotogastrura. Fla. Entomol. 2013, 96, 1579–1587. [Google Scholar] [CrossRef] [Scilit]
- Lima, E.C.A.; Zeppelini, D. First survey of Collembola in Fernando de Noronha. Fla. Entomol. 2015, 98, 368–369. [Google Scholar] [CrossRef] [Scilit]
- Rafael, J.A.; Limeira-De-Oliveira, F.; Hutchings, R.W.; Miranda, G.F.G.; Neto, A.M.d.S.; Somavilla, A.; Camargo, A.; Asenjo, A.; Pinto, Â.P.; Bello, A.d.M.; et al. Insect diversity in Fernando de Noronha. Rev. Bras. Entomol. 2020, 64, 2–26. [Google Scholar] [CrossRef] [Scilit]
- De Lima, E.C.A.; Lopes, B.C.H.; Oliveira-Neto, M.A.; de Mendonça, M.C.; Zeppelini, D. Synthesis of Brazilian Poduromorpha. Insects 2021, 12, 268. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- De Lima, E.C.A.; Lopes, B.C.H.; Oliveira-Neto, M.A.; de Mendonça, M.C.; Zeppelini, D. Synthesis of Brazilian Entomobryomorpha. Diversity 2022, 14, 553. [Google Scholar] [CrossRef] [Scilit]
- Godeiro, N.N.; Pacheco, G.; Liu, S.; Cipola, N.G.; Berbel-Filho, W.M.; Zhang, F.; Gilbert, M.T.P.; Bellini, B.C. Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes. Zool. Scr. 2020, 49, 329–339. [Google Scholar] [CrossRef] [Scilit]
- Godeiro, N.N.; Bellini, B.C.; Ding, N.; Xu, C.; Ding, Y.; Zhang, F. A mitogenomic phylogeny of the Entomobryoidea (Collembola): A comparative perspective. Zool. Scr. 2021, 50, 658–666. [Google Scholar] [CrossRef] [Scilit]
- Godeiro, N.N.; Xu, C.; Zhang, G.; Zhang, F. Mitogenomic features of three species of Entomobryoidea (Collembola) from China. Zootaxa 2022, 5120, 283–288. [Google Scholar] [CrossRef] [Scilit]
- Godeiro, N.N.; Ding, Y.; Cipola, N.G.; Jantarit, S.; Bellini, B.C.; Zhang, F. Phylogenomics and systematics of Entomobryoidea (Collembola): Marker design, phylogeny and classification. Cladistics 2023, 38, 101–115. [Google Scholar] [CrossRef] [Scilit]
- Marlier, G. Collemboles du Congo belge. Rev. Zool. Bot. Afr. 1945, 38, 252–264. [Google Scholar]
- Meng, G.; Li, Y.; Yang, C.; Liu, S. MitoZ: A toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic Acids Res. 2019, 47, e63. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Li, D.; Liu, C.M.; Luo, R.; Sadakane, K.; Lam, T.W. MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly. Bioinformatics 2015, 31, 1674–1676. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Karlicki, M.; Antonowicz, S.; Karnkowska, A. Tiara: Deep learning-based classification system for eukaryotic sequences. Bioinformatics 2022, 38, 344–350. [Google Scholar] [CrossRef] [Scilit]
- Wheeler, T.J.; Eddy, S.R. nhmmer: DNA homology search with profile HMMs. Bioinformatics 2013, 29, 2487–2489. [Google Scholar] [CrossRef] [Scilit]
- Gertz, E.M.; Yu, Y.K.; Agarwala, R.; Schäffer, A.A.; Altschul, S.F. Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST. BMC Biol. 2006, 4, 41. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Birney, E.; Clamp, M.; Durbin, R. GeneWise and Genomewise. Genome Res. 2004, 14, 988–995. [Google Scholar] [CrossRef] [Scilit]
- Nawrocki, E.P.; Eddy, S.R. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics 2013, 29, 2933–2935. [Google Scholar] [CrossRef] [Scilit]
- Jühling, F.; Putz, J.; Bernt, M.; Donath, A.; Middendorf, M.; Florentz, C.; Stadler, P.F. Improved systematic tRNA gene annotation allows new insights into mitochondrial genome evolution. Nucleic Acids Res. 2012, 40, 2833–2845. [Google Scholar] [CrossRef] [Scilit]
- Krzywinski, M.; Schein, J.; Birol, I.; Connors, J.; Gascoyne, R.; Horsman, D.; Jones, S.J.; Marra, M.A. Circos: An information aesthetic for comparative genomics. Genome Res. 2009, 19, 1639–1645. [Google Scholar] [CrossRef] [Scilit]
- Li, H.; Durbin, R. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics 2009, 25, 1754–1760. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Li, H.; Handsaker, B.; Wysoker, A.; Fennell, T.; Ruan, J.; Homer, N.; Marth, G.; Abecasis, G.; Durbin, R. The sequence alignment/map format and SAMtools. Bioinformatics 2009, 25, 2078–2079. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Gisin, H. Collemboles d’Europe VI. Rev. Suisse Zool. 1964, 71, 383–400. [Google Scholar] [CrossRef] [Scilit]
- Arlé, R. Relatório da excursão científica do Instituto Osvaldo Cruz realizada na zona da E.F. N.O.B. em outubro de 1938. Bol. Biol. 1939, 4, 295–300. [Google Scholar]
- Zhang, F.; Chen, Z.; Dong, R.-R.; Deharveng, L.; Stevens, M.I.; Huang, Y.-H.; Zhu, C.-D. Molecular phylogeny reveals independent origins of body scales in Entomobryidae. Mol. Phylogenet. Evol. 2014, 70, 231–239. [Google Scholar] [CrossRef] [Scilit]
- Capella-Gutiérrez, S.; Silla-Martínez, J.M.; Gabaldón, T. trimAl: A tool for automated alignment trimming in phylogenetic analyses. Bioinformatics 2009, 25, 1972–1973. [Google Scholar] [CrossRef] [Scilit]
- Kück, P.; Longo, G.C. FASconCAT-G: Extensive functions for multiple sequence alignment preparations. Front. Zool. 2014, 11, 81. [Google Scholar] [CrossRef] [Scilit]
- Minh, B.Q.; Schmidt, H.A.; Chernomor, O.; Schrempf, D.; Woodhams, M.D.; von Haeseler, A.; Lanfear, R. IQ-TREE 2: New models and efficient methods for phylogenetic inference. Mol. Biol. Evol. 2020, 37, 1530–1534. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Kalyaanamoorthy, S.; Minh, B.Q.; Wong, T.K.; von Haeseler, A.; Jermiin, L.S. ModelFinder: Fast model selection for accurate phylogenetic estimates. Nat. Methods 2017, 14, 587–589. [Google Scholar] [CrossRef] [Scilit]
- Sun, X.; Yu, D.; Xie, Z.; Dong, J.; Ding, Y.; Yao, H. Phylomitogenomic analyses on collembolan higher taxa. PLoS ONE 2020, 15, e0230827. [Google Scholar] [CrossRef] [Scilit]
- Nicolet, H. Recherches pour servir à l’histoire des Podurelles. Nouv. Mém. Soc. Helv. Sci. Nat. 1842, 6, 1–88. [Google Scholar]
- Collins, G.; Schneider, C.; Boštjančić, L.L.; Burkhardt, U.; Christian, A.; Decker, P.; Ebersberger, I.; Hohberg, K.; Lecompte, O.; Merges, D.; et al. The MetaInvert soil invertebrate genome resource. Commun. Biol. 2023, 6, 1241. [Google Scholar] [CrossRef] [Scilit]
- Tullberg, T. Förteckning över svenska Podurider. Öfvers. K. Vetensk.-Akad. Förh. 1871, 28, 143–145. [Google Scholar]
- Lubbock, J. Notes on the Thysanura. Part III. Trans. Linn. Soc. Lond. 1870, 26, 295–304. [Google Scholar] [CrossRef] [Scilit]
- Linnæus, C. Systema Naturæ, 10th ed.; Laurentii Salvii: Holmiæ, Sweden, 1758; pp. 608–609. [Google Scholar] [CrossRef] [Scilit]
- Folsom, J.M. East Indian Collembola. Bull. Mus. Comp. Zool. Harv. 1924, 65, 505–517. [Google Scholar]
- Jin, J.; Zhao, Y.; Zhang, G.; Pan, Z.; Zhang, F. Chromosome-level genome assembly of Entomobrya proxima. Sci. Data 2023, 10, 541. [Google Scholar] [CrossRef] [Scilit]
- Lee, B.H.; Lee, W.K. A taxonomic study of soil microarthropods. Annu. Rep. Biol. Res. 1981, 2, 129–140. [Google Scholar]
- Lee, I.; Koo, J.; Park, K.H. Complete mitochondrial genome of Homidia koreana. Mitochondrial DNA B 2022, 7, 135–137. [Google Scholar] [CrossRef] [Scilit]
- Lee, I.; Park, K.H. A new species of Homidia from Korea. Zootaxa 2024, 5463, 262–272. [Google Scholar] [CrossRef] [Scilit]
- Wu, J.; Chen, K. Complete mitochondrial genome of Homidia socia. Mitochondrial DNA B 2019, 4, 3941–3942. [Google Scholar] [CrossRef] [Scilit]
- Nunes, R.C.; Godeiro, N.N.; Pacheco, G.; Liu, S.; Gilbert, M.T.P.; Alvarez-Valin, F.; Zhang, F.; Bellini, B.C. The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position. Zool. Scr. 2019, 48, 783–800. [Google Scholar] [CrossRef] [Scilit]
- Brook, G. On a new genus of Collembola (Sinella). J. Linn. Soc. Zool. 1882, 16, 541–545. [Google Scholar] [CrossRef] [Scilit]
- Zhang, F.; Bellini, B.C.; Soto-Adames, F.N. New insights into the systematics of Entomobryoidea (Collembola: Entomobryomorpha): First instar chaetotaxy, homology and classification. Zool. Syst. 2019, 44, 249–278. [Google Scholar] [CrossRef]
- Yosii, R. On some Collembola of Japan and adjacent countries. Contrib. Biol. Lab. Kyoto Univ. 1965, 19, 1–71. [Google Scholar]
- Börner, C. Zur Collembolenfauna Javas. Tijdschr. Entomol. 1913, 56, 44–61. [Google Scholar]
- Folsom, J.W. Japanese Collembola. Part I. Bull. Essex Inst. 1898, 29, 51–58. [Google Scholar] [CrossRef] [Scilit]
- Lubbock, J. Monograph of the Collembola and Thysanura; Ray Society: London, UK, 1873; p. 276. [Google Scholar] [CrossRef] [Scilit]
- Guindon, S.; Dufayard, J.F.; Lefort, V.; Anisimova, M.; Hordijk, W.; Gascuel, O. New algorithms to estimate maximum-likelihood phylogenies: PhyML 3.0. Syst. Biol. 2010, 59, 307–321. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Hoang, D.T.; Chernomor, O.; von Haeseler, A.; Minh, B.Q.; Vinh, L.S. UFBoot2: Improving the ultrafast bootstrap approximation. Mol. Biol. Evol. 2018, 35, 518–522. [Google Scholar] [CrossRef] [Scilit]
- Huelsenbeck, J.P.; Ronquist, F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17, 754–755. [Google Scholar] [CrossRef] [Scilit]
- Jordana, R.; Arbea, J.I.; Simón, C.; Luciáñez, M.J. Fauna Iberica; Collembola Poduromorpha; Museo Nacional de Ciencias Naturales: Madrid, Spain, 1997; Volume 8, p. 807. [Google Scholar]
- Kawada, R.; Buffington, M.L. A scalable and modular dome illumination system for scientific microphotography. PLoS ONE 2016, 11, e0153426. [Google Scholar] [CrossRef] [Scilit]
- Shorthouse, D. SimpleMappr. Available online: https://www.simplemappr.net/ (accessed on 15 May 2025).
- Fjellberg, A. The labial palp in Collembola. Zool. Anz. 1999, 237, 309–330. [Google Scholar]
- Cipola, N.G.; Morais, J.W.; Bellini, B.C. A new species of Seira from northern Brazil. Zoologia 2014, 31, 489–495. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Katz, A.D. Morphological and molecular analysis of Willowsia nigromaculata. Eur. J. Taxon. 2021, 739, 92–116. [Google Scholar] [CrossRef] [Scilit]
- Chen, J.-X.; Christiansen, K.A. The genus Sinella of China. Orient. Insects 1993, 27, 1–54. [Google Scholar] [CrossRef] [Scilit]
- Yosii, R. Studies on the collembolan fauna of Malay and Singapore. Contrib. Biol. Lab. Kyoto Univ. 1959, 10, 1–65. [Google Scholar]
- Christiansen, K. The Nearctic members of Entomobrya. Bull. Mus. Comp. Zool. 1958, 118, 440–545. [Google Scholar]
- South, A. The taxonomy of British species of Entomobrya. Trans. R. Entomol. Soc. Lond. 1961, 113, 387–416. [Google Scholar] [CrossRef] [Scilit]
- Hüther, W. New aspects in taxonomy of Lepidocyrtus. In Proceedings of the 2nd International Seminar on Apterygota; Dallai, R., Ed.; University of Siena: Siena, Italy, 1986; pp. 61–65. [Google Scholar]
- Christiansen, K. The Entomobryiform male genital plate. Proc. Iowa Acad. Sci. 1958, 65, 474–476. [Google Scholar]
- Mari Mutt, J.A. A revision of the genus Dicranocentrus. Agric. Exp. Stn. Bull. 1979, 259, 1–79. [Google Scholar]
- Soto-Adames, F.N. Postembryonic development of dorsal chaetotaxy in Seira dowlingi. Zootaxa 2008, 1683, 1–31. [Google Scholar] [CrossRef] [Scilit]
- Pan, Z.-X.; Shi, S.; Zhang, F. New species of Homidia from eastern China. ZooKeys 2011, 152, 21–42. [Google Scholar] [CrossRef] [Scilit]
- Szeptycki, A. Chaetotaxy of the Entomobryidae and Its Phylogenetical Significance; Polish Academy of Sciences: Warsaw, Poland, 1979; p. 219. [Google Scholar]
- Tömösvary, Ö. Adatok hazánk Thysanura-faunájához. Math. Természettud. Közlem. 1882, 18, 119–131. [Google Scholar]
- Delamare-Deboutteville, C. Étude systématique. I. Collemboles. In Faune de Nids et des Terriers en Basse Côte-d’Ivoire; Delamare-Deboutteville, C., Paulian, R., Eds.; Lechevalier: Paris, France, 1952; pp. 62–77. [Google Scholar]
- Gapud, V.G. Studies on the Philippine Collembola, III. Suborder Arthropleona: Entomobryidae. Philipp. Entomol. 1971, 2, 1–50. [Google Scholar]
- Schött, H. Results of Dr. E. Mjöberg’s Swedish Scientific Expeditions to Australia, 1910–1913. No. 15, Collembola. Ark. Zool. 1917, 11, 1–60. [Google Scholar]
- International Commission on Zoological Nomenclature (ICZN). International Code of Zoological Nomenclature, 4th ed.; International Trust for Zoological Nomenclature: London, UK, 2000; p. 306. [Google Scholar]
- Kottek, M.; Grieser, J.; Beck, C.; Rudolf, B.; Rubel, F. World map of the Köppen–Geiger climate classification updated. Meteorol. Z. 2006, 15, 259–263. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Good, R. The Geography of Flowering Plants, 4th ed.; Longman Group: Harlow, UK, 1974; p. 574. [Google Scholar]
- Batistella, M. Espécies vegetais dominantes do Arquipélago de Fernando de Noronha. Acta Bot. Bras. 1996, 10, 223–235. [Google Scholar] [CrossRef] [Scilit]
- Darwin, C. Journal of Researches into the Natural History and Geology of the Countries Visited during the Voyage of H.M.S. Beagle; Murray: London, UK, 1845. [Google Scholar]
- Almeida, F.F.M. Arquipélago de Fernando de Noronha—Registro de monte vulcânico do Atlântico Sul. In Sítios Geológicos e Paleontológicos do Brasil; Schobbenhaus, C., Campos, D.A., Queiroz, E.T., Winge, M., Berbert-Born, M.L.C., Eds.; DNPM/CPRM–SIGEP: Brasília, Brazil, 2002; pp. 361–368. [Google Scholar]
- Mari Mutt, J.A. Redescription of Willowsia jacobsoni (Börner). J. Agric. Univ. P. R. 1981, 65, 361–373. [Google Scholar] [CrossRef] [Scilit]
- Mari Mutt, J.A.; Palacios-Vargas, J.G. Americabrya, a new genus of Entomobryidae. J. N. Y. Entomol. Soc. 1987, 95, 99–108. [Google Scholar]
- Katz, A.D.; Giordano, R.; Soto-Adames, F. Taxonomic review and phylogenetic analysis of North American Entomobrya. ZooKeys 2015, 525, 1–75. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Arbea, J.; Baquero, E.; Jordana, R.; Morais, J.W.; Bellini, B.C. Survey of Seira from Iberian Peninsula and Canary Islands. Zootaxa 2018, 4458, 1–66. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Morais, J.W.; Godeiro, N.N.; Bellini, B.C. Taxonomic revision of Tyrannoseira. Zootaxa 2019, 4586, 201–248. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Morais, J.W.; Bellini, B.C. Review of Lepidocyrtinus (African species). Zootaxa 2020, 4898, 1–110. [Google Scholar] [CrossRef] [Scilit]
- Cipola, N.G.; Oliveira, J.V.L.C.; Bellini, B.C.; Ferreira, A.S.; Lima, E.C.A.; Brito, R.A.; Stievano, L.C.; Souza, P.G.; Zeppelini, D. Review of eyeless Pseudosinella from Brazilian caves. Insects 2020, 11, 194. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Jantarit, S.; Satasook, C.; Deharveng, L. Coecobrya sirindhornae sp. n., the most highly troglomorphic Collembola in Southeast Asia. ZooKeys 2019, 824, 21–44. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Nilsai, A.; Detcharoen, M.; Godeiro, N.N.; Jantarit, S. Four new species of troglomorphic Coecobrya from Thailand. Subterr. Biol. 2021, 41, 1–42. [Google Scholar] [CrossRef] [Scilit]
- Martynova, E.F.; Chelnokov, V.G.; Kaplin, V.G. Fauna and ecology of Collembola of the Eastern Karakum. Izv. Akad. Nauk Kazakhskoi SSR Biol. 1979, 1, 35–44. [Google Scholar]
- Womersley, H. On some Collembola from South Africa and Southern Rhodesia. Ann. S. Afr. Mus. 1934, 30, 441–475. [Google Scholar]
- Zhang, F.; Sun, D.D.; Yu, D.Y.; Wang, B.X. Molecular phylogeny supports S-chaetae as a key character better than jumping organs and body scales in classification of Entomobryoidea (Collembola). Sci. Rep. 2015, 5, 12471. [Google Scholar] [CrossRef] [Scilit]
- Zhang, F.; Pan, Z.; Wu, J.; Ding, Y.; Yu, D.; Wang, B. Dental scales in Entomobryidae and new definition of Entomobryinae. Invert. Syst. 2016, 30, 598–615. [Google Scholar] [CrossRef] [Scilit]
- Ding, Y.-H.; Yu, D.-H.; Guo, W.-B.; Li, J.-N.; Zhang, F. Molecular phylogeny of Entomobrya from China. Insect Sci. 2018, 26, 587–597. [Google Scholar] [CrossRef] [Scilit]



| Gene Name | Gene Name | Type | Direction | Length | End | Start |
|---|---|---|---|---|---|---|
| 16S ribosomal RNA | l-rRNA | rRNA | - | 921 | 921 | 1 |
| tRNA-Val | trnV(uac) | tRNA | - | 68 | 820 | 753 |
| 12S ribosomal RNA | s-rRNA | rRNA | - | 760 | 1574 | 815 |
| Control region | 367 | 1941 | 1575 | |||
| tRNA-Ile | trnI(gau) | tRNA | + | 64 | 2005 | 1942 |
| tRNA-Gln | trnQ(uug) | tRNA | - | 69 | 2073 | 2005 |
| tRNA-Met | trnM(cau) | tRNA | + | 69 | 2138 | 2070 |
| NADH dehydrogenase subunit 2 | ND2 | CDS | + | 985 | 3128 | 2144 |
| tRNA-Trp | trnW(uca) | tRNA | + | 68 | 3193 | 3126 |
| tRNA-Cys | trnC(gca) | tRNA | - | 62 | 3253 | 3192 |
| tRNA-Tyr | trnY(gua) | tRNA | - | 65 | 3317 | 3253 |
| cytochrome c oxidase subunit I | COX1 | CDS | + | 1535 | 4852 | 3318 |
| tRNA-Leu | trnL(uaa) | tRNA | + | 65 | 4916 | 4852 |
| cytochrome c oxidase subunit II | COX2 | CDS | + | 682 | 5597 | 4916 |
| tRNA-Lys | trnK(cuu) | tRNA | + | 72 | 5667 | 5596 |
| tRNA-Asp | trnD(guc) | tRNA | + | 68 | 5733 | 5666 |
| ATP synthase F0 subunit 8 | ATP8 | CDS | + | 169 | 5901 | 5733 |
| ATP synthase F0 subunit 6 | ATP6 | CDS | + | 682 | 6575 | 5894 |
| cytochrome c oxidase subunit III | COX3 | CDS | + | 789 | 7362 | 6574 |
| tRNA-Gly | trnG(ucc) | tRNA | + | 62 | 7422 | 7361 |
| NADH dehydrogenase subunit 3 | ND3 | CDS | + | 346 | 7767 | 7422 |
| tRNA-Ala | trnA(ugc) | tRNA | + | 65 | 7829 | 7765 |
| tRNA-Arg | trnR(ucg) | tRNA | + | 66 | 7893 | 7828 |
| tRNA-Asn | trnN(guu) | tRNA | + | 66 | 7957 | 7892 |
| tRNA-Ser | trnS(gcu) | tRNA | + | 68 | 8024 | 7957 |
| tRNA-Glu | trnE(uuc) | tRNA | + | 64 | 8087 | 8024 |
| tRNA-Phe | trnF(gaa) | tRNA | - | 65 | 8151 | 8087 |
| NADH dehydrogenase subunit 5 | ND5 | CDS | - | 1717 | 9866 | 8150 |
| tRNA-His | trnH(gug) | tRNA | - | 64 | 9917 | 9854 |
| NADH dehydrogenase subunit 4 | ND4 | CDS | - | 1350 | 11,265 | 9916 |
| NADH dehydrogenase subunit 4L | ND4L | CDS | - | 283 | 11,546 | 11,264 |
| tRNA-Thr | trnT(ugu) | tRNA | + | 64 | 11,611 | 11,548 |
| tRNA-Pro | trnP(ugg) | tRNA | - | 64 | 11,674 | 11,611 |
| NADH dehydrogenase subunit 6 | ND6 | CDS | + | 484 | 12,159 | 11,676 |
| cytochrome b | CYTB | CDS | + | 1135 | 13,292 | 12,158 |
| tRNA-Ser | trnS(uga) | tRNA | + | 72 | 13,361 | 13,290 |
| NADH dehydrogenase subunit 1 | ND1 | CDS | - | 937 | 14,312 | 13,376 |
| tRNA-Leu | trnL(uag) | tRNA | - | 66 | 14,383 | 14,318 |
| 16S ribosomal RNA | l-rRNA | rRNA | - | 486 | 14,817 | 14,333 |
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Viana, S.d.S.; Godeiro, N.N.; de Morais, J.W.; Cipola, N.G. Phylogenomic Insights of Mesentotoma Salmon, 1942 (Collembola: Entomobryidae: Entomobryinae): First Mitogenome and Phylogenetic Hypothesis, Taxonomic Notes, and Description of Two New Brazilian Species. Diversity 2026, 18, 89. https://doi.org/10.3390/d18020089
Viana SdS, Godeiro NN, de Morais JW, Cipola NG. Phylogenomic Insights of Mesentotoma Salmon, 1942 (Collembola: Entomobryidae: Entomobryinae): First Mitogenome and Phylogenetic Hypothesis, Taxonomic Notes, and Description of Two New Brazilian Species. Diversity. 2026; 18(2):89. https://doi.org/10.3390/d18020089
Chicago/Turabian StyleViana, Stéphanie dos Santos, Nerivania Nunes Godeiro, José Wellington de Morais, and Nikolas Gioia Cipola. 2026. "Phylogenomic Insights of Mesentotoma Salmon, 1942 (Collembola: Entomobryidae: Entomobryinae): First Mitogenome and Phylogenetic Hypothesis, Taxonomic Notes, and Description of Two New Brazilian Species" Diversity 18, no. 2: 89. https://doi.org/10.3390/d18020089
APA StyleViana, S. d. S., Godeiro, N. N., de Morais, J. W., & Cipola, N. G. (2026). Phylogenomic Insights of Mesentotoma Salmon, 1942 (Collembola: Entomobryidae: Entomobryinae): First Mitogenome and Phylogenetic Hypothesis, Taxonomic Notes, and Description of Two New Brazilian Species. Diversity, 18(2), 89. https://doi.org/10.3390/d18020089

