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Article

Reproductive Genetic Carrier Screening in Romania: A Couple-Based Study of Pathogenic Molecular Variants

by
Miruna Gug
1,2,3,
Cristina Gug
2,3,*,
Aurora Alexandra Jurca
4,*,
Tudor-Alexandru Popoiu
1,5,
Raul Patrascu
6,
Paula Andreea Roman
7,
Larisa Olteanu
3 and
Nicoleta Andreescu
2,8
1
Doctoral School of Medicine, “Victor Babes” University of Medicine and Pharmacy, 300041 Timisoara, Romania
2
Medical Genetics, Department of Microscopic Morphology, Faculty of Medicine, “Victor Babes” University of Medicine and Pharmacy, 300041 Timisoara, Romania
3
Medical Genetics Office Doctor Gug, 300200 Timisoara, Romania
4
Doctoral School of Biological and Biomedical Sciences, University of Oradea, 410087 Oradea, Romania
5
Medical Informatics and Biostatistics, Department of Functional Sciences, Faculty of Medicine, “Victor Babes” University of Medicine and Pharmacy, 300041 Timisoara, Romania
6
Physiology, Department of Functional Sciences, Faculty of Medicine, “Victor Babes” University of Medicine and Pharmacy, 300041 Timisoara, Romania
7
General Medicine, Faculty of Medicine, “Victor Babes” University of Medicine and Pharmacy, 300041 Timisoara, Romania
8
Genomic Medicine Centre, “Victor Babes” University of Medicine and Pharmacy, 300041 Timisoara, Romania
*
Authors to whom correspondence should be addressed.
Int. J. Mol. Sci. 2026, 27(8), 3581; https://doi.org/10.3390/ijms27083581
Submission received: 17 March 2026 / Revised: 9 April 2026 / Accepted: 14 April 2026 / Published: 17 April 2026
(This article belongs to the Special Issue Genomics of Human Disease)

Abstract

Reproductive genetic carrier screening (RGCS) is recommended preconceptionally or early pregnancy to identify the risk of autosomal recessive (AR) disorders in healthy couples. Data on shared carrier status at the couple’s level remains limited in Eastern Europe. This study presents the first couple-based RGCS analysis in Western Romania. We retrospectively analyzed RGCS results from 247 couples with no known consanguinity at the time of evaluation (494 apparently unrelated individuals, aged 22–52 years), assessed at a single genetic center between 2020–2024. Next-generation sequencing was performed using an expanded panel targeting 302 genes, including 300 genes associated with AR onset disorders. This analysis was accompanied by both pre- and post-test genetic counseling. The prevalence of individual and shared carrier status and reproductive risk was assessed. Pathogenic or likely pathogenic (PLP) variants were identified in the study cohort, with an overall couple carrier frequency of 64.37%. Shared carrier status for PLP variants in the same gene was identified in 17.4%, including three couples carrying pathogenic variants in two shared genes. Additionally, 46.96% of couples carried pathogenic variants in different genes without overlapping. The most frequently shared genes with PLP variants were HFE, CFTR, SMN1, BTD, and COL7A1; 14 additional shared genes with PLP variants were associated with severe, early-onset disorders. Forty-three couples were deemed high risk for AR conditions. Their reproductive choices varied, including in vitro fertilization or proceeding with pregnancy with or without prenatal testing. Couple-based RGCS revealed a substantial burden of shared AR carrier status in Western Romania, supporting the implementation of population-level screening programs to improve reproductive risk assessment and informed decision-making.

1. Introduction

EURORDIS estimates that 6–8% of the population are affected by a rare disease [1], with autosomal recessive (AR) disorders accounting for a substantial proportion of this burden. Although individually rare, collectively these conditions represent a significant public health concern due to their cumulative prevalence and impact on morbidity and mortality. About 2–4% of couples are at risk of conceiving a child with an autosomal recessive genetic disorder [2]. RGCS has emerged as a key strategy for identifying couples at risk of having affected offspring and for supporting informed reproductive decision-making.
Professional societies have progressively expanded their recommendations regarding carrier screening. In 2017, the American College of Obstetricians and Gynecologists (ACOG) issued a committee opinion supporting expanded carrier screening panels, recommending testing for conditions with a carrier frequency above 1%, which, in the referenced study, corresponded to variants in 40 genes and enabled the identification of 76–97% of carrier couples [3]. Historically, carrier screening initiatives began in the 1970s within the Ashkenazi Jewish population, primarily targeting Tay–Sachs disease and enabling substantial reductions in disease incidence through informed reproductive choices [4].
Subsequently, carrier screening focused on specific disorders known to have a higher prevalence in certain ethnic populations [5]. Cyprus historically established one of the first national carrier screening programs for beta-thalassemia, with premarital screening reducing disease incidence dramatically [6]. The carrier screening program in Turkey is available as the Premarital Screening Program for Hemoglobinopathy and Spinal muscular atrophy (SMA). Encouragingly, in regions with a high prevalence of certain AR conditions (for example, beta-thalassemia and sickle cell disease), single-gene screening programs have demonstrated remarkable reductions in the frequency of affected births [7].
Currently, the scope of carrier screening varies considerably between countries, ranging from a limited number of conditions to extensive panels. However, in many settings, carrier screening is not publicly funded and access remains unequal [3]. The implementation of population-wide screening programs based on publicly funded whole-exome sequencing (WES) technologies has been proposed as a means to ensure equitable access, yet such initiatives remain limited [8].
In Romania, reproductive genetic carrier screening is not part of a national public health program, and available testing is largely opportunistic and privately funded. For couples who do not belong to high-risk ethnic groups, do not originate from genetically isolated regions, and have no known family history of AR disorders, expanded panel screening may represent a more appropriate strategy than ethnicity-based approaches. Nevertheless, data regarding the feasibility, detection rate, and clinical utility of couple-based carrier screening in the Romanian population are lacking.
Therefore, the primary aim of this study was to identify PLP variants and, specifically, to detect couples in which both partners are heterozygous carriers of PLP variants in the same gene. Through this identification process, the reproductive risk could be inferred, enabling the provision of targeted genetic counseling, including discussion of appropriate reproductive options.

2. Results

2.1. Indications for Genetic Screening

A total of 247 couples were included in the study. At the time of testing, 37.65% of the female partners were pregnant. All couples underwent an expanded carrier screening panel comprising 302 genes, including 300 genes associated with AR conditions and two genes (F2 and F5) linked to autosomal dominant (AD) disorders, which were not included in the present analysis. In all couples, both partners underwent carrier screening.
A history of reproductive complications represented another major indication for testing. Specifically, 37.25% of couples reported between one and four previous miscarriages. In addition, 10.12% of couples had a history of unsuccessful in vitro fertilization (IVF), with the number of failed procedures ranging from 1 to 15.
Genetic evaluation was also indicated for couples with a known family history of genetic disorders. Overall, 9.71% of couples were referred due to a previously affected child or a relative diagnosed with an autosomal recessive PLP-related disorder.
Among them, 21 couples had children affected by genetic diseases; in 19 families, the diagnosis corresponded to an autosomal recessive monogenic disorder. Six of these affected children were deceased at the time of parental testing. In this cohort, mortality was associated with pathogenic variants in genes including SMN1, CFTR, and COL7A1, as well as seven other genes (Table 1).
Additionally, 5.27% of couples underwent preconception carrier screening despite the absence of previous reproductive complications or a known family history of genetic disease.

2.2. Classification of Couples According to the Presence of PLP Variants

We classified couples into two main categories, Negative and Positive, based on the presence of PLP variants in their genotypic profile. Couples in which both partners were negative were identified in 4.86% of the cases (Figure 1).
A total of 95.14% of couples had at least one partner carrying a PLP variant. These couples were further classified as follows: 76 couples had only one partner identified as a carrier, 116 couples had both partners carrying PLP variants in different genes, and 43 couples had both partners carrying PLP variants in the same gene. The remaining 12 couples (4.86%) were negative in both partners.

2.3. Classification of Genes According to Reproductive Risk

Genes were classified according to the presence of PLP variants in couples in order to assess reproductive risk for autosomal recessive (AR) disorders. A total of 19 genes were identified in which PLP variants were present in both partners of 43 couples, placing them at increased reproductive risk (red zone). In contrast, 142 genes harbored PLP variants in only one partner across 192 couples, with no shared variants, indicating no reproductive risk (yellow zone). For the remaining 157 genes, no PLP variants were detected in any individual, suggesting that these disorders pose minimal risk in the studied population (green zone) (Figure 2).
The highest proportion of reproductive risk was attributable to three genes, namely HFE, CFTR, and SMN1, which together accounted for 65.12% of all at-risk couples, each case involving both partners carrying heterozygous PLP variants in the same gene. When analyzed individually, HFE was identified in 32.56% of cases, CFTR in 18.60%, and SMN1 in 13.95%, with all couples harboring concordant heterozygous PLP variants in the respective gene.
The intermediate-frequency category included BTD and COL7A1, each responsible for 4.65% of at-risk couples, all cases being explained by the presence of heterozygous PLP variants in both partners within the same gene.
The remaining genes, namely ALDOB, CYP21A2, DHCR7, EVC, EYS, GJB2, HSD17B4, LIFR, PAH, PKHD1, SERPINA1, SLC26A2, SMPD1, and TPP1, were each identified in 2.33% of at-risk couples, with reproductive risk determined by the detection of heterozygous PLP variants in both members of the couple in the corresponding gene. Collectively, this genetically heterogeneous group accounted for 32.56% of the total at-risk cohort (Figure 3).

2.4. Couples with PLP Variants in Shared Genes

A total of 43 couples carried pathogenic or likely pathogenic (PLP) variants in the same gene, indicating an increased reproductive risk for autosomal recessive disorders Most couples had variants in a single shared gene, while a few (couples 16, 23, and 27) presented with variants in two genes. Both partners carried identical variants in several cases (e.g., CFTR, GJB2, BTD, SMN1), whereas in others, different variants were identified within the same gene, consistent with potential compound heterozygosity. Recurrent findings included variants in HFE, CFTR, and SMN1, reflecting their known carrier frequency (Table 2).
For SMPD1 (couple 1), the notation c.[variant];[?] indicates that a variant was identified on one allele, while the second allele could not be characterized.

2.5. Gene Classification According to Disease Morbidity

We analyzed the at-risk couples by classifying the genes carrying PLP variants according to the morbidity of the associated genetic conditions, which were grouped into high, moderate, and low morbidity categories.
The first category of high morbidity diseases comprised nine genes, corresponding to 15 at-risk couples (Table 3). It should be noted that for six genes listed (PKHD1, SMN1, COL7A1, TPP1, HSD17B4, SMPD1), couples sought genetic testing because they already had an affected child, totaling 12 affected families (Table 1). These genes are associated with disorders characterized by severe clinical manifestations and high risk of morbidity and mortality.
The second category of moderate-morbidity diseases included six genes, corresponding to 11 at-risk couples. An affected child had already been born in six families due to variants in three genes: CFTR (4 cases), PAH (1 case), and ALDOB (1 case) (Table 3). These genes are associated with conditions of intermediate severity, with moderate morbidity that may require ongoing clinical management.
The third category of low-morbidity diseases comprised four genes, corresponding to 18 at-risk couples. Except for the LIFR gene, which was identified in one family with an affected child, the remaining variants in this category were detected incidentally through carrier screening in both partners, representing unexpected findings. These genes are associated with conditions that generally result in mild clinical manifestations and low morbidity (Table 3).

2.6. Medically Actionable Conditions

We classified genes according to their association with AR conditions for which interventions are available that may prevent disease occurrence or reduce disease severity through treatment, surveillance, or reproductive options (Table 4).
The clearly medically actionable category includes genes associated with disorders for which effective treatment, prevention, or disease management strategies are available. We identified 10 genes associated with conditions of high morbidity, for which interventions can significantly reduce clinical impact and improve patient outcomes.
The partially actionable or context-dependent category comprises for 4 genes for which interventions exist but are limited, supportive, or mutation-specific. Conditions associated with these genes generally result in moderate morbidity, requiring ongoing management or mutation-specific approaches rather than fully preventive or curative options.
The currently limited clinical actionability category includes genes for which no established therapy exists to modify disease progression or provide prevention. Management is primarily symptomatic or supportive, and gene-specific therapies remain experimental or unavailable. These 5 genes are generally associated with low morbidity conditions, although they may still have significant implications for affected families.

2.7. Regional Origins of the Study Cohort Across Romania

The study cohort comprised 494 individuals, who, at the time of evaluation, resided or worked in the western region of Romania, primarily in Timis County. Analysis of their self-reported geographical origin revealed a diverse representation from multiple counties (Table 5). Most participants (77.53%) reported originating from Timis County, while the remaining individuals were distributed across 20 other Romanian counties, with the largest contributions from Arad (5.47%), Caras-Severin (3.85%), and Hunedoara (2.63%). Additional counties contributed smaller proportions (≤1.82% each), and four participants (0.81%) reported a foreign origin (Table 5).

3. Discussion

Population-level carrier screening supported by governmental resources has not yet been implemented in Romania. To our knowledge, this study represents the first couple-based RGCS analysis performed in a single-center from a private practice in Western Romania and provides an overview of the potential implications of these findings. Given that the real prevalence of AR conditions remains largely unknown across specific geographical regions [28], our results contribute updated data for the western region of Romania.
The highest proportion of reproductive risk was attributable to three genes, namely HFE, CFTR, and SMN1, in which PLP variants were identified, accounting together for 65.12% of all at-risk couples. When analyzed individually, PLP variants in HFE were identified in 32.56% of cases, CFTR in 18.60%, and SMN1 in 13.95%. In all these situations, both partners were heterozygous carriers of PLP variants in the same gene. The intermediate-frequency category included PLP variants in BTD and COL7A1, each responsible for 4.65% of at-risk couples. The remaining 14 genes, namely ALDOB, CYP21A2, DHCR7, EVC, EYS, GJB2, HSD17B4, LIFR, PAH, PKHD1, SERPINA1, SLC26A2, SMPD1, and TPP1, harbored PLP variants that were each identified in 2.33% of at-risk couples. Collectively, this genetically heterogeneous group accounted for 32.56% of the total at-risk cohort, as illustrated in Figure 3.
A previous study of the western population in Romania had identified the risk associated with the most frequent genes and related autosomal recessive (AR) monogenic disorders [29]. Our current study, targeting non-consanguineous couples, highlights unexpected differences in reproductive risk. The most frequent PLP variants in our cohort were found in HFE (1:5), CFTR (1:9), BTD (1:16), GJB2 (1:17), and CYP21A2 (1:19). However, regarding RGCS, the most shared genes within couples were HFE, CFTR, and SMN1, cumulatively accounting for 65.12% of at-risk couples, followed by BTD and COL7A1 (9.3%). These results indicate that population-level carrier frequency provides an overview of potential risk, but accurate reproductive risk assessment requires identification of shared variants within specific couples.
Genes such as SMN1 and COL7A1 are associated with conditions characterized by high morbidity and mortality (Table 1 and Table 2). Although their carrier frequencies were not among the highest, eight affected families were identified, highlighting the considerable clinical impact of these disorders. Overall, the AR conditions already diagnosed in our cohort were linked to SMN1, COL7A1, TPP1, HSD17B4, SMPD1, LIFR, and PKHD1, underscoring the substantial burden these diseases impose on affected families and communities [30].
The discussion expands, arguing that the composition of genetic screening panels should not be limited to genes associated with high morbidity, nor should it be determined exclusively by clinicians. Instead, it should incorporate the perspectives of a broad range of relevant groups, including individuals who would use such testing (prospective parents) as well as patients with lived experience of the conditions under consideration [31].
Although PLP variants were identified in most individuals, fewer than 20% of couples were truly at reproductive risk. Among these at-risk couples, 42.85% had previously affected children (Table 1). These families sought genetic testing primarily to inform future reproductive decisions, as raising a child with a hereditary disorder can impose considerable emotional, social, and financial burdens [32].
Previous studies using smaller gene panels estimated that approximately 1–2% of reproductive couples are at increased risk for AR disorders [33]. In our cohort, the 300-gene panel identified 235 positive carrier couples (95.14%), while only 12 couples (4.85%) tested negative in both partners. Among couples carrying at least one PLP variant, 158 (64.23%) were identified as carriers, including 43 couples (17.4%) in which both partners carried PLP variants in the same gene. These findings closely resemble those reported in a study from Portland, USA, using a 728-gene panel, where approximately 17% of couples shared at least one carrier gene [5]. An Italian study conducted on 766 couples from an IVF clinic identified 173 couples (22.6%) in which one partner was a carrier, whereas 20 couples (2.6%) were found to be at increased reproductive risk, carrying pathogenic or likely pathogenic variants in the CFTR, FMR1 (FRAXA), SMN1, HBB, and DHCR7 genes [34].
Identical variants were detected in 60.46% of at-risk couples, whereas 39.53% carried different variants within the same gene (Figure 2). Even in non-consanguineous couples, such situations may result in unexpected reproductive risk. Some variants, including those in HFE, CFTR, SMN1, BTD, and GJB2, are relatively common in European populations due to shared ancestry [29]. In contrast, the rare variants identified in COL7A1, ALDOB, EVC, EYS, and HSD17B4 may reflect distant familial relationships or unknown and certainly unexpected founder effects, highlighting the importance of detailed pedigree analysis.
The exact list of identical variants, as detected in both the mother and the father, can be consulted in Table 2. The reproductive risk in non-consanguineous couples, although generally low [8], may be unpredictable. Increased reproductive risk was observed in several couples originating from geographically proximate areas who had previously delivered affected children. In all cases in which carrier status is identified, discussion with relatives and targeted genetic counseling are recommended in order to guide future reproductive planning.
When comparing the PLP variants identified in our cohort with those reported in a previous study on the Western Romanian population, we observed that the high-frequency gene group (<1:50 carriers) included PLP variants in HFE, CFTR, BTD, GJB2, CYP21A2, SERPINA1, PAH, and SMN1; the moderate-frequency group (1:51–1:100) included PLP variants in ALDOB, COL7A1, DHCR7, EVC, SLC26A2, and TPP1; the low-frequency group (1:101–1:150) included PLP variants in EYS; whereas the extremely rare gene group (>1:151) included PLP variants in HSD17B4, LIFR, PKHD1, and TPP1 [29]. Notably, rare conditions caused by genes belonging to the so-called “long tail,” often associated with high morbidity, still affected approximately 2% of the tested couples, emphasizing the importance of comprehensive RGCS.
High-morbidity genes identified in this cohort (PKHD1, SMN1, COL7A1, TPP1, HSD17B4, CYP21A2, DHCR7, SMPD1, and EYS) can be broadly categorized according to clinical actionability (Table 3). Some conditions are considered medically actionable when treatment is initiated immediately after birth (such as SMN1, CYP21A2, TPP1), others are partially actionable (PKHD1, HSD17B4, SMPD1, COL7A1), whereas several genes currently fall under the category of limited clinical actionability (DHCR7, EYS) (Table 4).
Couples in which only one partner is a carrier generally do not face an increased risk of having an affected child, although genetic counseling is still recommended. When both partners carry variants in the same gene, the risk of an affected child is typically 25% per pregnancy, with a 50% probability of carrier offspring and a 25% probability of unaffected offspring. In such cases, couples should be informed about the available reproductive options to enable informed decision-making. Possible reproductive strategies include:
(1)
Natural conception followed by prenatal diagnosis, typically through amniocentesis. If the fetus is affected, parents may prepare for the birth of a child with the condition, or consider pregnancy termination, depending on legal regulations and personal beliefs.
(2)
IVF with preimplantation genetic testing for monogenic disorders (PGT-M) prior to embryo transfer, allowing the selection and implantation of unaffected embryos. Although this approach prevents the establishment of an affected pregnancy, it involves substantial costs, maternal hormonal treatment, and potential ethical considerations.
(3)
Use of donor gametes (sperm or oocytes) from donors genetically screened for carrier status, thereby eliminating the risk for the specific condition.
(4)
Adoption as a non-biological parenting option.
(5)
Choosing not to pursue biological parenthood, an option selected by some couples.
After receiving the RGCS results, reproductive decisions may vary considerably, being influenced by the highly personal context of each couple, the presence of relatives affected by the respective condition, social norms regarding disability, the availability of treatment options, and the perspectives of clinicians managing individuals with the condition [35]. During post-test genetic counseling, patients were informed about diseases associated with the identified PLP variants and about available reproductive options; some couples who later pursued another pregnancy opted for prenatal diagnosis through amniocentesis followed by targeted genetic testing. Personalized genetic counseling should consider reproductive history, family background, existing genetic data, and the couple’s willingness to undergo preconceptional or prenatal testing [36]. In our cohort, a high proportion of women were already pregnant at the time of testing, highlighting the importance of pre-test counseling in providing accurate information and managing anxiety related to genetic testing [37]. Ideally, RGCS should be offered preconceptionally or early in pregnancy [38].
Reproductive-age couples who receive a result indicating an increased risk of having a child affected by a severe childhood-onset genetic disorder, are unlikely to have prior knowledge of, or experience with, that condition. For this reason, post-test counseling should be readily accessible and should provide clear information about the disorder and its expected clinical manifestations, so that prospective parents can make decisions aligned with their values and expectations. Face-to-face counseling is considerably more useful, and in many cases indispensable, compared with information available online, which often cannot convey a realistic understanding of what it means to raise a child with the condition or what life may be like for the affected individual [36,39].
In Romania, access to RGCS remains limited, as these tests are currently available mainly through private laboratories and are not reimbursed by the national health system. As in many other countries, limited awareness and financial constraints represent important barriers to wider implementation [37,40].
Recent public health initiatives suggest an increasing national interest in expanding genetic screening programs. In February 2026, during Rare Disease Day, the Romanian Minister of Health announced the expansion of the national neonatal screening program from three to twenty-two conditions and the establishment of a National Neonatal Screening Registry. The program introduces 19 additional metabolic and genetic biomarkers that allow early detection of severe and rare diseases before irreversible damage occurs. This measure represents an important step toward strengthening preventive healthcare policies and aligning national practices with European standards [41]. Within this context, our cohort, although consisting of participants established and tested in Western Romania, reflects geographic origins that extend across the country, providing initial insights into the genetic background of the Romanian population.
These developments highlight the growing recognition of the importance of early genetic diagnosis in Romania and support the need for broader implementation of carrier screening strategies, including RGCS, as part of comprehensive reproductive and preventive healthcare programs.
The 300 autosomal-recessive–associated genes can be conceptualized as a pyramid: 157 genes were not identified in any individual (forming the base), 143 genes were detected in at least one partner (middle level), and 19 genes were associated with reproductive risk (the apex of the pyramid) (Figure 2). Ensuring the inclusion of these 19 genes in screening panels may be particularly important for effective population screening and for the development of future public health strategies.
Globally, government-funded carrier screening programs vary substantially in scope and implementation. Australia has introduced publicly funded screening for three conditions starting in 2024 [38], while Cyprus and Greece have long-standing national prevention programs targeting beta-thalassemia. The United Kingdom offers universal antenatal screening for beta-thalassemia [42], and Israel has recently expanded its national carrier screening program to include 290 genes and approximately 650 pathogenic variants [3]. In parallel, pilot studies are currently being conducted worldwide to address the practical, psychosocial, and bioethical challenges associated with the implementation of RGCS programs [43]. As genomic technologies become increasingly accessible and public awareness continues to grow, RGCS is expected to become a routine component of reproductive planning, regardless of an individual’s genetic background, ethnicity, family history, or the availability of a government-funded screening program [39].
Based on the current level of evidence, and considering factors such as healthcare provider time, overall healthcare costs, the frequency of severely affected offspring, patient satisfaction, and, most importantly, the diagnostic yield in identifying at-risk couples or pregnancies, several authors recommend that RGCS should be offered to all couples who are planning a pregnancy or who already have an ongoing pregnancy [34,44]. Expanding access to comprehensive carrier screening may therefore represent an important step toward improving reproductive autonomy, enabling informed decision-making, and supporting future public health strategies aimed at reducing the burden of severe inherited disorders.

4. Materials and Methods

4.1. Participant Selection and Clinical Data

A retrospective study was conducted on data obtained from 494 apparently unrelated individuals (247 couples) of reproductive age (22–52 years). All participants were tested between 1 January 2020 and 30 December 2024 at a single private genetic center from Western Romania.
All couples underwent expanded carrier screening using a multigene panel that included 302 genes, of which 300 were associated with autosomal recessive inheritance. The present analysis included only PLP variants identified in autosomal recessive genes.
Carrier screening was performed for both partners in all couples.
The following clinical and demographic data were recorded for each participant: age at testing, county of origin, reproductive history, relevant family history of genetic disorders, and the gene and variant identified in each individual.

4.2. Genetic Counseling

All participants underwent two sessions of genetic counseling conducted by an experienced clinical geneticist. During the pre-test session, reproductive history, parental age, and any known or suspected personal or family hereditary conditions were documented, and detailed family pedigrees were constructed. After the carrier screening results became available, a post-test counseling session was held to communicate the identified reproductive risks and their potential clinical consequences. For couples classified as high risk, possible reproductive options were discussed, with the main recommendation being prenatal genetic diagnosis by amniocentesis in future pregnancies, followed by targeted confirmation of the pathogenic variants identified in the parents.

4.3. Carrier Screening and Gene Panel

Carrier screening was performed using the Invitae Comprehensive Carrier Screen (Invitae Corporation, San Francisco, CA, USA), comprising the analysis of 302 genes, including 300 associated with autosomal recessive conditions and two genes (F2 and F5) associated with autosomal dominant conditions. The complete gene list is available in Figure S1 (Supplementary Materials).
Peripheral blood samples were collected in EDTA tubes (BD Vacutainer®, Becton, Dickinson and Company, Franklin Lakes, NJ, USA) from all individuals at the Medical Genetics Office Doctor Gug (Timișoara, Romania) and shipped to Invitae Corporation (San Francisco, CA, USA), where all genetic analyses were performed under a contractual agreement.
Genomic DNA extraction, library preparation, and target enrichment were performed by Invitae Corporation using a hybridization-based capture protocol. Next-generation sequencing (NGS) was carried out on Illumina sequencing platforms (Illumina, Inc., San Diego, CA, USA), according to the laboratory’s clinically validated protocols.
Sequencing reads were aligned to the human reference genome (GRCh37) using a proprietary bioinformatics pipeline developed and validated by Invitae Corporation. Variant calling, annotation, and interpretation were performed using the same validated internal pipeline, in accordance with the standards implemented in the laboratory at the time of testing.
As detailed information regarding specific software tools, versions, and algorithms is proprietary, these data are provided and validated by Invitae Corporation (San Francisco, CA, USA). For further technical details, the laboratory can be contacted at clientservices@invitae.com.
The analysis targeted coding regions, ±10 base pairs of flanking intronic sequences, and selected clinically relevant non-coding regions included at the time of panel design [45].
Copy number variants (CNVs) were detected using read-depth–based algorithms implemented within the validated pipeline of Invitae Corporation. Genes with complex genomic architecture were further analyzed using gene-specific approaches, including long-range PCR and/or long-read sequencing when required. Repeat expansions were assessed using PCR-based methods followed by capillary electrophoresis, as specified by the testing laboratory [45].
Only clinically significant variants (pathogenic or likely pathogenic) were included in the analysis, while variants of uncertain significance (VUS) were not reported unless subsequently reclassified. Variant classification and interpretation were conducted according to the joint guidelines of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology (ACMG/AMP), as previously described [45].
A negative result does not exclude carrier status; therefore, residual risk was estimated by Invitae Corporation based on detection rates and population-specific carrier frequencies, as specified in the laboratory report.

4.4. Assay Limitations

Based on validation data provided by Invitae Corporation (San Francisco, CA, USA), the assay demonstrates >99% analytical sensitivity and specificity for single nucleotide variants and small insertions/deletions (<15 bp), as well as exon-level copy number variants.
Larger insertions/deletions and certain copy number changes are also detectable; however, sensitivity may be reduced depending on variant size, genomic context, and sequence complexity. Copy number analysis is performed at single-exon resolution, although rare events affecting individual exons may not be reliably detected due to sequence-specific or technical limitations [45].
Certain classes of variants, including structural rearrangements (e.g., inversions, translocations, or gene conversion events), as well as variants located in regions with complex genomic architecture (e.g., segmental duplications or short tandem repeats), may not be detected. In addition, limitations inherent to short-read sequencing technologies (Illumina platforms, Illumina, Inc., San Diego, CA, USA) may prevent accurate determination of variant phasing, low-level mosaicism, or mapping in highly homologous regions.
Unless specifically targeted, promoter regions and other non-coding sequences are not systematically analyzed. Furthermore, the use of the GRCh37 reference genome instead of newer assemblies (e.g., GRCh38) may limit the representation of certain genomic regions.
This assay analyzes genomic DNA extracted from peripheral blood; in rare situations, the analyzed DNA may not fully reflect the individual’s constitutional genome (e.g., in cases of chimerism, prior transplantation, or recent transfusion) [45].
All performance metrics and technical specifications are based on internal validation studies conducted by Invitae Corporation and reported in the official laboratory documentation.

4.5. Statistical Analysis and Cohort Characteristics

The study cohort comprised 494 individuals, representing 247 couples who underwent RGCS upon request, outside of a national screening program. The age of participants ranged between 22 and 52 years, with a mean age of 33.93 ± 5.48 years and a median of 34 years, reflecting a population within the typical reproductive age range.
Reproductive history data were recorded for descriptive purposes. A proportion of couples reported previous pregnancy losses (range: 0–4), while a smaller subset had a history of unsuccessful IVF attempts (range: 0–15 procedures).
These variables were collected to provide clinical context regarding the study population but were not used for inferential statistical analysis, as they are not directly related to the genetic outcomes assessed in this study.

5. Conclusions

This study represents the first couple-based RGCS analysis in Western Romania, highlighting its utility in identifying reproductive risk even among non-consanguineous couples without a known family history of monogenic disorders. Among 247 couples, 17.4% carried shared PLP variants in the same gene, with HFE, CFTR, and SMN1 accounting for the majority of at-risk couples, while rare high-morbidity variants in genes such as COL7A1, ALDOB, and TPP1 also contributed to reproductive risk. These findings underscore the importance of assessing couple-level shared variants, not just individual carrier status, for accurate reproductive risk evaluation.
RGCS enables informed reproductive decision-making by providing prospective parents with actionable information regarding autosomal recessive condition. Comprehensive pre- and post-test counseling is essential to explain potential clinical outcomes, available interventions, and reproductive options, even extremely rare variants, often overlooked in smaller panels, affected approximately 2% of couples, emphasizing the value of comprehensive gene panels.
At the population level, these results support integrating RGCS into routine reproductive care in Romania, where national programs are currently limited. As genomic technologies become more accessible and public awareness increases, RGCS is expected to become a standard component of reproductive planning. Broad implementation could enhance reproductive autonomy, reduce the incidence of severe autosomal recessive disorders, and inform future public health strategies.
In conclusion, this study demonstrates that even in a relatively small and genetically heterogeneous population, RGCS effectively identifies at-risk couples, providing actionable data to guide reproductive decisions and laying the groundwork for national-level screening initiatives and further research in Eastern Europe.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/ijms27083581/s1.

Author Contributions

Conceptualization, M.G. and C.G.; methodology, C.G.; software, T.-A.P.; validation, N.A.; formal analysis, M.G. and T.-A.P.; investigation, L.O. and P.A.R.; resources, R.P.; data curation, A.A.J. and L.O.; writing—original draft preparation, M.G.; writing—review and editing, C.G. and N.A.; visualization, R.P.; supervision, N.A.; Correspondence, C.G. and A.A.J. All authors have read and agreed to the published version of the manuscript.

Funding

We would like to acknowledge Victor Babeș University of Medicine and Pharmacy of Timisoara, Romania, for their support in covering the costs of publication for this paper.

Institutional Review Board Statement

The study was conducted in accordance with the Declaration of Helsinki. Ethical approval was obtained from the Ethics Committee of Scientific Research at Victor Babeș University of Medicine and Pharmacy, Timișoara, România (No. 35, 3 June 2024).

Informed Consent Statement

Written informed consent was obtained from all subjects involved in the study.

Data Availability Statement

The data presented in this study are available on request from the corresponding authors.

Acknowledgments

The authors gratefully acknowledge Victor Babeș University of Medicine and Pharmacy Timișoara for its support in covering the publication costs of this research. We also extend our sincere appreciation to all patients who participated in this study. Furthermore, we thank our collaborators from the partner laboratory Invitae Corporation for their valuable contribution. The authors have reviewed and edited the manuscript and take full responsibility for its content.

Conflicts of Interest

The authors declare no conflicts of interest.

Abbreviations

The following abbreviations are used in this manuscript:
ACOGAmerican College of Obstetricians and Gynecologists
ADAutosomal Dominant
AMPAssociation for Molecular Pathology
ARAutosomal Recessive
bpBase pairs
CACalifornia
CFCystic fibrosis
CFTR modulatorCystic Fibrosis Transmembrane Conductance Regulator modulator
CLN2Classic late-infantile neuronal ceroid lipofuscinosis
CNVCopy Number Variant
COPDChronic Obstructive Pulmonary Disease
DNADeoxyribonucleic acid
ESHGEuropean Society of Human Genetics
ESHREEuropean Society of Human Reproduction and Embryology
EURORDISRare Diseases Europe
GRCh37Genome Reference Consortium Human build 37
IVFIn Vitro Fertilization
NGSNext-Generation Sequencing
PGT-MPreimplantation genetic testing for monogenic disorders
PLPPathogenic or likely pathogenic
PCRPolymerase Chain Reaction
RGCSReproductive genetic carrier screening
SMASpinal muscular atrophy
USAUnited States of America
VUSVariant of Uncertain Significance
WESWhole-exome sequencing

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Figure 1. Couples categorized according to reproductive genetic risk, with color coding reflecting the presence of pathogenic or likely pathogenic (PLP) AR variants in each partner of the couple.
Figure 1. Couples categorized according to reproductive genetic risk, with color coding reflecting the presence of pathogenic or likely pathogenic (PLP) AR variants in each partner of the couple.
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Figure 2. Gene classification according to the reproductive risk.
Figure 2. Gene classification according to the reproductive risk.
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Figure 3. Risk categories according to the number of couples identified with shared genes.
Figure 3. Risk categories according to the number of couples identified with shared genes.
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Table 1. Families with an affected child at the time of carrier testing.
Table 1. Families with an affected child at the time of carrier testing.
GeneDiseaseNumber of
Affected Families
Number of
Deceased Children
SMN1Spinal muscular atrophy (SMA)61
CFTRCystic fibrosis (CF)40
COL7A1Dystrophic epidermolysis bullosa21
TPP1Neuronal ceroid lipofuscinosis type 211
HSD17B4Peroxisomal metabolic conditions11
SMPD1Niemann–Pick disease type A11
LIFRStüve–Wiedemann syndrome11
PKHD1AR polycystic kidney disease11
PAHPhenylketonuria10
ALDOBHereditary fructose intolerance10
Table 2. Common genes and PLP gene variants identified in at-risk couples.
Table 2. Common genes and PLP gene variants identified in at-risk couples.
Couple No.Shared GenesGene PLP Variant
1SMPD1c.[1268A>G];[?] (p.[His423Arg];[?])
SMPD1c.[1685T>A];[?] (p.[Met562Lys];[?])
2SMN1Heterozygous Deletion of Exons 7 + 8
SMN1Heterozygous Deletion of Exons 7 + 8
3LIFRc.1789C>T (p.Arg597*1)
LIFRc.1418del (p.Ser473Leufs*15)
4HFEc.845G>A (p.Cys282Tyr) § 2
HFEc.187C>G (p.His63Asp) §
5CFTRc.1210-34TG[11]T[5] §
CFTRc.1210-34TG[11]T[5] §
6HFEc.187C>G (p.His63Asp) §
HFEc.187C>G (p.His63Asp) §
7SLC26A2c.1957T>A (p.Cys653Ser)
SLC26A2c.1724del (p.Lys575Serfs*10)
8HFEc.187C>G (p.His63Asp) §
HFEc.187C>G (p.His63Asp) §
9HFEc.187C>G (p.His63Asp) §
HFEc.187C>G (p.His63Asp) §
10HFEc.845G>A (p.Cys282Tyr) §
HFEc.187C>G (p.His63Asp) §
11GJB2c.35del (p.Gly12Valfs*2)
GJB2c.35del (p.Gly12Valfs*2)
12EYSc.9036del (p.Leu3013Serfs*6)
EYSc.9036del (p.Leu3013Serfs*6)
13HFEc.187C>G (p.His63Asp) §
HFEc.845G>A (p.Cys282Tyr) §
14EVCc.919T>C (p.Ser307Pro)
EVCc.919T>C (p.Ser307Pro)
15HFEc.187C>G (p.His63Asp) §
HFEc.187C>G (p.His63Asp) § homozygous
16CFTR and HFEc.1210-34TG[11]T[5] (Intronic) § and c.187C>G (p.His63Asp) §
CFTR and HFEc.1210-34TG[11]T[5] (Intronic) § and c.187C>G (p.His63Asp) §
17HFEc.187C>G (p.His63Asp) §
HFEc.187C>G (p.His63Asp) §
18DHCR7c.91C>T (p.Arg31Cys)
DHCR7c.452G>A (p.Trp151*)
19BTDc.1330G>C (p.Asp444His)
BTDc.1330G>C (p.Asp444His)
20CFTRc.3909C>G (p.Asn1303Lys)
CFTRc.1521_1523del (p.508del)
21HFEc.187C>G (p.His63Asp) §
HFEc.187C>G (p.His63Asp) §
22SMN1Heterozygous Deletion of Exons 7 + 8
SMN1Heterozygous Deletion of Exons 7 + 8
23CYP21A2 and HFEc.955C>T (p.Gln319*) and c.187C>G (p.His63Asp) §
CYP21A2 and HFEc.844G>T (p.Val282Leu) and c.187C>G (p.His63Asp) §
24HFEc.187C>G (p.His63Asp) §
HFEc.187C>G (p.His63Asp) §
25HFEc.187C>G (p.His63Asp) §
HFEc.187C>G (p.His63Asp) §
26HFEc.187C>G (p.His63Asp) §
HFEc.845G>A (p.Cys282Tyr) §
27BTD and SERPINA1c.1330G>C (p.Asp444His) and c.863A>T (p.Glu288Val) §
BTD and SERPINA1c.1595C>T (p.Thr532Met) and c.1177C>T (p.Pro393Ser)
28SMN1Heterozygous Deletion of Exons 7 + 8
SMN1Heterozygous Deletion of Exons 7 + 8
29CFTRc.1521_1523del (p.508del)
CFTRc.1521_1523del (p.508del)
30SMN1Heterozygous Deletion of Exons 7 + 8 in SMN1 and Duplication of SMN2
SMN1Heterozygous Deletion of Exons 7 + 8 in SMN1 and Duplication of SMN2
31HSD17B4c.788del p.(Pro263Glnfs*2)
HSD17B4c.788del p.(Pro263Glnfs*2)
32ALDOBc.448G>C (p.Ala150Pro)
ALDOBc.448G>C (p.Ala150Pro)
33CFTRc.1521_1523del (p.508del)
CFTRc.1521_1523del (p.508del)
34TPP1c.622C>T, p.(Arg208*)
TPP1c.1678_1679delCT
35CFTRc.1521_1523del (p.508del)
CFTRc.3472 C>G (Arg1158*)
36PAHc.1066-11G>A
PAHc.1222C>T p.Arg408Trp
37CFTRc.1521_1523del (p.508del)
CFTR7T + 7T
38CFTRc.1521_1523del (p.508del)
CFTRc.3909C>G (p.Asn1303Lys)
39SMN1Heterozygous Deletion of Exons 7 + 8
SMN1Heterozygous Deletion of Exons 7 + 8
40SMN1Heterozygous Deletion of Exon 7
SMN1Heterozygous Deletion of Exons 7 + 8
41COL7A1c.425A>G (p.Lys142Arg) (Exon 3)
COL7A1c.2308_c.2314 + 1delAGGACTGG (Intron 17)
42COL7A1c.3140-2A>G
COL7A1c.3140-2A>G
43PKHD1Exon 3 (c.107C>T) p.Thr36Met
PKHD1Exon 64 (c.11439C>G) p.Phe3813Leu
*1 Premature stop codon; § 2 This variant is known to have low penetrance.
Table 3. Genetic conditions by morbidity level.
Table 3. Genetic conditions by morbidity level.
Morbidity LevelGeneDiseaseClinical Picture
High
morbidity
CYP21A2Congenital adrenal hyperplasia
due to 21-hydroxylase deficiency
Life-threatening adrenal crises in infancy
if untreated (Classic salt-wasting type)
PKHD1AR polycystic kidney diseaseSevere renal and hepatic involvement, pulmonary hypoplasia, and high neonatal mortality
SMN1Spinal muscular atrophySevere neuromuscular disease
COL7A1Dystrophic epidermolysis bullosaSevere skin and mucosal involvement
TPP1Neuronal ceroid lipofuscinosis type 2Fatal childhood neurodegenerative disease
HSD17B4Peroxisomal disorderSevere encephalopathy and liver failure
DHCR7Smith–Lemli–Opitz syndromeMultiple malformations and severe
intellectual disability
SMPD1Niemann–Pick disease type A/BLysosomal storage disorder (type A often lethal)
EYSRetinitis pigmentosaProgressive retinal degeneration leading to blindness
Moderate morbidityCFTRCystic fibrosisAffects lungs, pancreas, and reproductive system
PAHPhenylketonuriaCognitive impairment if untreated; diet-controlled
EVCEllis–van Creveld syndromeChondrodysplastic dwarfism with
possible cardiac defects
ALDOBHereditary fructose intolerancePotentially severe but reversible with diet
SERPINA1Alpha-1 antitrypsin deficiencyChronic condition affecting lungs and/or liver
SLC26A2Skeletal dysplasiasVariable severity (from lethal to moderate forms)
Low
morbidity
HFEHereditary hemochromatosisLow morbidity; manageable with
phlebotomy and monitoring
BTDBiotinidase deficiencyCompletely reversible
GJB2Nonsyndromic congenital
hearing loss
Classically severe, but milder
variants exist
LIFRStüve–Wiedemann syndromeVariable severity depending on mutation
Table 4. Genetic conditions by actionability.
Table 4. Genetic conditions by actionability.
ActionabilityGeneDiseaseActionable Measures
Medically
actionable
HFEHereditary
hemochromatosis
Preventable organ damage with
phlebotomy and monitoring [9]
CFTRCystic fibrosisTargeted therapies (CFTR modulators), early
pulmonary & nutritional management [10]
SMN1Spinal muscular
atrophy
Disease-modifying therapies available
(Nusinersen, Onasemnogene, Risdiplam) [11]
BTDBiotinidase deficiencyCompletely preventable with
biotin supplementation [12]
ALDOBHereditary fructose intoleranceDisease prevented by dietary exclusion
of fructose and KHK inhibition [13]
PAHPhenylketonuriaDiet ± pharmacologic therapy [14]
CYP21A2Congenital adrenal hyperplasia
due to 21-hydroxylase deficiency
Glucocorticoid and mineralocorticoid
replacement immediately after birth and
lifelong for prevention of adrenal crisis [15]
GJB2Nonsyndromic congenital
hearing loss
Early intervention (hearing aids,
cochlear implants, speech therapy) [16]
SERPINA1Alpha-1 antitrypsin deficiencyIntravenous alpha-1 antitrypsin, COPD 1
therapies, Liver transplant [17]
TPP1CLN2 2 diseaseEnzyme replacement therapy slows neurodegeneration (Cerliponase alfa) [18]
Partially
actionable
SMPD1Niemann–Pick
disease A/B
Enzyme replacement for type B [19] but
type A largely non-actionable
HSD17B4Peroxisomal
disorders
Supportive management only
(no curative therapy) [20]
PKHD1AR polycystic
kidney disease
Treatment of congenital hepatic
fibrosis and portal hypertension,
(dialysis) and kidney transplant [21]
SLC26A2Skeletal dysplasiaOrthopedic and supportive interventions(no molecular cure) [22]
COL7A1Dystrophic epidermolysis bullosaSurgical pseudosyndactyly release, emerging gene therapies and novel skin grafts [23]
Limited
clinical
actionability
DHCR7Smith–Lemli–Opitz syndromeManagement is
Symptomatic/supportive
[24,25,26,27]
EVCEllis–van Creveld syndrome
EYSRetinitis pigmentosa
LIFRStüve–Wiedemann syndrome
1 Chronic Obstructive Pulmonary Disease; 2 Classic late-infantile neuronal ceroid lipofuscinosis.
Table 5. Origins and regional distribution of study participants in Romania.
Table 5. Origins and regional distribution of study participants in Romania.
Romanian CountyFrequencyPercentValid PercentCumulative Percent
Arad275.475.475.47
Bihor20.410.415.87
Bistria-Nasaud20.410.416.28
Caras-Severin193.853.8510.12
Dolj20.410.4110.53
Foreign40.810.8111.34
Gorj91.821.8213.16
Galati10.200.2013.36
Hunedoara132.632.6315.99
Ilfov20.410.4116.40
Iasi51.011.0117.41
Mehedinti40.810.8118.22
Maramures20.410.4118.62
Mures30.610.6119.23
Neamt20.410.4119.64
Not specified20.410.4120.04
Olt20.410.4120.45
Prahova40.810.8121.26
Sibiu20.410.4121.66
Satu Mare20.410.4122.07
Tulcea10.200.2022.27
Timis38377.5377.5399.80
Valcea10.200.20100.00
Missing00.00
Total494100.00
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MDPI and ACS Style

Gug, M.; Gug, C.; Jurca, A.A.; Popoiu, T.-A.; Patrascu, R.; Roman, P.A.; Olteanu, L.; Andreescu, N. Reproductive Genetic Carrier Screening in Romania: A Couple-Based Study of Pathogenic Molecular Variants. Int. J. Mol. Sci. 2026, 27, 3581. https://doi.org/10.3390/ijms27083581

AMA Style

Gug M, Gug C, Jurca AA, Popoiu T-A, Patrascu R, Roman PA, Olteanu L, Andreescu N. Reproductive Genetic Carrier Screening in Romania: A Couple-Based Study of Pathogenic Molecular Variants. International Journal of Molecular Sciences. 2026; 27(8):3581. https://doi.org/10.3390/ijms27083581

Chicago/Turabian Style

Gug, Miruna, Cristina Gug, Aurora Alexandra Jurca, Tudor-Alexandru Popoiu, Raul Patrascu, Paula Andreea Roman, Larisa Olteanu, and Nicoleta Andreescu. 2026. "Reproductive Genetic Carrier Screening in Romania: A Couple-Based Study of Pathogenic Molecular Variants" International Journal of Molecular Sciences 27, no. 8: 3581. https://doi.org/10.3390/ijms27083581

APA Style

Gug, M., Gug, C., Jurca, A. A., Popoiu, T.-A., Patrascu, R., Roman, P. A., Olteanu, L., & Andreescu, N. (2026). Reproductive Genetic Carrier Screening in Romania: A Couple-Based Study of Pathogenic Molecular Variants. International Journal of Molecular Sciences, 27(8), 3581. https://doi.org/10.3390/ijms27083581

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