Diversity and Taxonomic Distribution of Endophytic Bacterial Community in the Rice Plant and Its Prospective
Abstract
:1. Introduction
2. Endophytic Bacterial Diversity in the Rice Plant
3. Factors Involving in Endophytic Bacterial Communities’ Variations
4. Method for Isolation and Identification of Endophytic Bacteria
5. Mechanism of Plant-Growth Promotion by Endophytes
5.1. Direct Plant-Growth Promotion by Endophytes
Biological Nitrogen Fixation
5.2. Availability of Phosphate
5.3. Phytohormones
5.3.1. Auxins
5.3.2. Cytokinins
5.3.3. Gibberellins
5.3.4. Ethylene and 1-Aminocyclopropane-1-Carboxylate Deaminase
5.3.5. Abscisic Acid
6. Indirect Plant-Growth Promotion by Endophytes
6.1. Biocontrol of Plant Pathogens by Endophytic Bacteria
6.2. Antibiosis
6.3. Signal Interference
6.4. Predation and Parasitism
6.5. Induced Systemic Resistance
7. Implementation of Bioinformatics in Endophytes Diversity Analysis
8. Endophytes-Induced Bioactive Compounds
9. Conclusions and Prospects
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Endophytes | Host | Antagonistic Activity | References |
---|---|---|---|
Bacillus wiedmannii strain C-1CL-2 | Japonica Rice (Oryza sativa L.) cultivar Xiushui 48 | Fusarium graminearum and Rhizoctonia solani | [25] |
Bacillus wiedmannii strain C-1CL-4 | Fusarium graminearum and Rhizoctonia solani | ||
Bacillus altitudinis strain C-1W-5 | Magnaporthe oryzae | ||
Lysinibacillus fusiformis strain C-1WF-3 | Fusarium moniliforme | ||
Fictibacillus phosphorivorans strain C-1Y-9 | Fusarium graminearum and Rhizoctonia solani | ||
Fictibacillus phosphorivorans strain C-1Y-10 | Magnaporthe oryzae | ||
Fictibacillus phosphorivorans strain C-1Y-13 | Fusarium moniliforme | ||
Fictibacillus phosphorivorans strain C-1Y-16 | Fusarium moniliforme | ||
Fictibacillus phosphorivorans strain C-1Y-17 | Fusarium graminearum, Fusarium moniliforme and Rhizoctonia solani | ||
Bacillus altitudinis strain C-2B-2 1 | Rice (Oryza sativa L.) cultivar Y-003 | Rhizoctonia solani | |
Bacillus altitudinis strain C-2D-1 1 | Rhizoctonia solani | ||
Bacillus aryabhattai strain C-2HW-1 | Fusarium graminearum and Rhizoctonia solani | ||
Lysinibacillus mangiferihumi strain C-2HW-3 | Fusarium moniliforme | ||
Bacillus marisflavi strain C-2LY-2 | Fusarium graminearum and Rhizoctonia solani | ||
Bacillus marisflavi strain C-2LY-5 | Fusarium graminearum and Rhizoctonia solani | ||
Bacillus aryabhattai strain C-2LY-6 | Fusarium graminearum, Fusarium moniliforme and Rhizoctonia solani | ||
Bacillus altitudinis strain C-2RO-1 | Fusarium graminearum, Rhizoctonia solani and Magnaporthe oryzae | ||
Bacillus altitudinis strain C-2RO-3 | Fusarium graminearum, Rhizoctonia solani and Magnaporthe oryzae | ||
Bacillus altitudinis strain C-2RO-4 | Rhizoctonia solani | ||
Bacillus altitudinis strain C-2S-1 | Rhizoctonia solani | ||
Bacillus altitudinis strain C-2SN-3 | Fusarium moniliforme | ||
Bacillus cereus strain C-2W-1 | Fusarium moniliforme | ||
Bacillus tequilensis strain C-2W-3 | Rhizoctonia solani | ||
Bacillus indicus strain C-2Y-1 | Fusarium graminearum and Rhizoctonia solani | ||
Bacillus marisflavi strain C-2Y-2 | Fusarium graminearum, Fusarium moniliforme and Rhizoctonia solani | ||
Bacillus marisflavi strain C-2Y-6 | Fusarium graminearum and Rhizoctonia solani | ||
Bacillus cereus strain C-3CL-6 | Rice (Oryza sativa L.) cultivar CO-39 | Fusarium moniliforme | |
Bacillus toyonensis strain C-3CL-7 | Rhizoctonia solani | ||
Bacillus wiedmannii strain C-3CL-8 | Fusarium graminearum and Rhizoctonia solani | ||
Lysinibacillus mangiferihumi strain C-3F-5 | Fusarium moniliforme | ||
Bacillus altitudinis strain C-3R-1 | Fusarium graminearum and Rhizoctonia solani | ||
Bacillus altitudinis strain C-3R-3 | Fusarium graminearum, Rhizoctonia solani and Magnaporthe oryzae | ||
Bacillus altitudinis strain C-3R-8 | Fusarium graminearum and Rhizoctonia solani | ||
Bacillus cereus strain C-3R-9 | Fusarium moniliforme | ||
Bacillus altitudinis strain C-3R-10 | Fusarium graminearum, Rhizoctonia solani and Magnaporthe oryzae | ||
Cupriavidus metallidurans strain C-3SP-3 | Magnaporthe oryzae | ||
Paenibacillus cucumis strain C-3T-7 | Fusarium moniliforme | ||
Bacillus altitudinis strain C-3WA-8 | Rhizoctonia solani and Magnaporthe oryzae | ||
Bacillus marisflavi strain C-3Y-2 | Fusarium graminearum and Fusarium moniliforme | ||
Bacillus marisflavi strain C-3Y-5 | Fusarium graminearum, Fusarium moniliforme and Rhizoctonia solani | ||
Fictibacillus phosphorivorans strain C-3Y-10 | Magnaporthe oryzae | ||
Bacillus sp. (in: Bacteria) strain CPS003 | Rice Oryza sativa L. var. indica cv. RD41 | Bipolaris sp. isolate KPS3, Bipolaris sp. isolate KPS5, Curvularia sp. isolate KPS41, Nigrospora sp. isolate KPS45, Fusarium sp. isolate KPS91 and Curvularia sp. isolate KPS102 | [176] |
Bacillus sp. (in: Bacteria) strain CZR007 | |||
Bacillus sp. (in: Bacteria) strain CZS004 | |||
Bacillus sp. (in: Bacteria) strain CZS006 | |||
Streptomyces endus strain OsiSh -2 | Rice (Oryza sativa L.) cultivar Gumei 4 | Magnaporthe oryzae, Colletitrichum karstii, Colletitrichum siamense, Colletitrichum camelliae, Colletitrichum frocticola, Colletitrichum glosporioides, Valsa mali, Guignardia bidwellii, Physalospora piricola, Botryosphaeria ribis, Rhizopus nigricans, Phomopsis vexans, Cladosporium fulvum, Stempblium consortiale, Botrytis cinerea, Colletrichum orbiculare, Helminthosporium maydis, Nigrospora oryzae and Rhizoctonia solani | [140,145] |
Bacillus velezensis strain YC7010 | Rice (Oryza sativa L.) | Fusarium fujikuroi | [177] |
Bacillus velezensis strain YC7007 | Fusarium fujikuroi KACC 44022, Magnaporthe grisea isolate KACC 40415, Bipolaris oryzae isolate KACC 40853, Rhizoctonia solani isolate KCTC 40101, Sclerotinia sclerotiorum isolate GSCC 50501, Botrytis cinerea isolate KCTC 6973, Fusarium oxysporum isolate KCTC 16909, Botryosphaeria dothidea isolate GSCC 50201, Pythium ultimum isolate GSCC 50651 and Alternaria panax isolate KACC 42461 | ||
Enterobacter asburiae strain VWB1 | Rice (Oryza sativa L.) cultivar rex | Fusarium oxysporum | [178] |
Pantoea dispersa strain VWB2 | Fusarium oxysporum | ||
Pseudomonas putida strain VWB3 | Fusarium oxysporum | ||
Pantoea agglomerans strain CT1 | Rice (Oryza sativa L.) variety CT6919 | Pythium ultimum | [179] |
Pantoea agglomerans strain CT2 | Curvularia sp and Fusarium oxysporum var. radicis-lycopersici strain 22 | ||
Pantoea ananatis strain CT10 | Pythium ultimum, Curvularia sp and Fusarium oxysporum var. radicis-lycopersici strain 27 | ||
Paenibacillus sp. CT14 | Curvularia sp | ||
Microbacterium sp. CT28 | Pythium ultimum | ||
Curtobacterium sp.CT30 | Pythium ultimum | ||
Paenibacillus kribbensis strain HS-R01 | Rice cultivars (Oryza sativa var. Japonica c.v. Chilbo, Chuchung, Haiami, Ilpum | Fusarium oxysporum and Rhizoctonia solani | [83] |
Paenibacillus kribbensis strain HS-R14 | Fusarium oxysporum and Rhizoctonia solani | ||
Bacillus aryabhattai strain HS-S05 | Fusarium oxysporum | ||
Bacillus megaterium strain KW7-R08 | Fusarium oxysporum | ||
Klebsiella pneumoniae strain KW7-S06 | Fusarium oxysporum and Rhizoctonia solani | ||
Klebsiella pneumoniae strain KW7-S22 | Fusarium oxysporum and Rhizoctonia solani | ||
Klebsiella pneumoniae strain KW7-S27 | Fusarium oxysporum and Rhizoctonia solani | ||
Klebsiella pneumoniae strain KW7-S33 | Fusarium oxysporum and Rhizoctonia solani | ||
Bacillus subtilis strain CB-R05 | Fusarium oxysporum and Rhizoctonia solani | ||
Microbacterium binotii strain CB-S18 | Fusarium oxysporum and Rhizoctonia solani | ||
Microbacterium trichotecenolyticum strain SW521-L21 | Fusarium oxysporum and Rhizoctonia solani | ||
Microbacterium trichotecenolyticum strain SW521-L37 | Fusarium oxysporum and Rhizoctonia solani |
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Ali, M.; Ali, Q.; Sohail, M.A.; Ashraf, M.F.; Saleem, M.H.; Hussain, S.; Zhou, L. Diversity and Taxonomic Distribution of Endophytic Bacterial Community in the Rice Plant and Its Prospective. Int. J. Mol. Sci. 2021, 22, 10165. https://doi.org/10.3390/ijms221810165
Ali M, Ali Q, Sohail MA, Ashraf MF, Saleem MH, Hussain S, Zhou L. Diversity and Taxonomic Distribution of Endophytic Bacterial Community in the Rice Plant and Its Prospective. International Journal of Molecular Sciences. 2021; 22(18):10165. https://doi.org/10.3390/ijms221810165
Chicago/Turabian StyleAli, Mohsin, Qurban Ali, Muhammad Aamir Sohail, Muhammad Furqan Ashraf, Muhammad Hamzah Saleem, Saddam Hussain, and Lei Zhou. 2021. "Diversity and Taxonomic Distribution of Endophytic Bacterial Community in the Rice Plant and Its Prospective" International Journal of Molecular Sciences 22, no. 18: 10165. https://doi.org/10.3390/ijms221810165