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Article

Asymmetric Mannich Reaction of α-(2-Nitrophenylsulfenyl)imino Acetamide: A Cyclization-Driven Process

1
Graduate School of Pharmaceutical Sciences, Tokushima University, Shomachi, Tokushima 770-8505, Japan
2
Research Cluster on “Key Material Development”, Tokushima University, Shomachi, Tokushima 770-8505, Japan
3
Research Cluster on “Hybrid Modality Exploration”, Tokushima University, Shomachi, Tokushima 770-8505, Japan
*
Authors to whom correspondence should be addressed.
Molecules 2026, 31(3), 449; https://doi.org/10.3390/molecules31030449
Submission received: 1 December 2025 / Revised: 23 January 2026 / Accepted: 24 January 2026 / Published: 27 January 2026
(This article belongs to the Section Organic Chemistry)

Abstract

An enantioselective Mannich reaction of 2-(2-nitrophenylsulfenylimino)acetamide is described. Under the optimized conditions using proline, triethylamine, and diarylthiourea additives, the initially formed Mannich adduct undergoes irreversible cyclization to afford cyclic hemiaminal products in 21–58% yield, with diastereomeric ratios ranging from 53:47 to 83:17. Enantioselectivity reaches up to 97% ee. The presence of N–H functionality of the substrate is crucial for this cyclization; in its absence, the Mannich adduct undergoes facile decomposition. Subsequent reduction in this intermediate efficiently furnished the corresponding homoserine derivative.

1. Introduction

Peptides have attracted considerable attention as promising therapeutic candidates due to their broad spectrum of biological activities, which arise from the diversity of their amino acid sequences [1,2]. However, peptides composed of only proteinogenic amino acids are often susceptible to rapid degradation under physiological conditions [3]. The incorporation of noncanonical amino acids into peptide chains not only greatly increases structural diversity but also improves proteolytic stability, thereby augmenting the prospect of peptide-based drug discovery [4,5]. A notable example of a noncanonical amino acid is homoserine, a one-carbon homolog of serine. Homoserine has been identified in several peptide natural products, some of which exhibit significant biological activities, such as keanumycins and tolaasin [6,7]. Moreover, the structural importance of homoserine has been highlighted in designed linear peptides, where its side chain promotes intramolecular hydrogen bonding and conformational stabilization [8]. Substitution at the β-position of homoserine offers the potential to modulate backbone conformation and fine-tune intermolecular interactions, as β-branched residues are well known to exert a strong influence on peptide backbone geometry [9,10]. Derivatization from aspartic acid represents a straightforward route to homoserine frameworks; however, such approaches are limited in the accessible substitution patterns at the β-position [11]. Among the methodologies for constructing homoserine derivatives, the reactions of α-imino esters with enolizable aldehydes or ketones have been extensively studied using proline-type organocatalysts [12,13,14,15]. Subsequent reduction of the resulting adduct readily furnishes the desired homoserine derivatives. However, most reported protocols employ a 4-methoxyphenyl group as the N-protecting group, the removal of which requires harsh conditions, thereby restricting the utility of these methods in the synthesis of peptides containing homoserine derivatives.
As a part of our studies on the asymmetric synthesis of noncanonical amino acids, we have developed asymmetric nucleophilic addition of indoles or arylboronates to N-2-nitrophenylsulfenyl (Nps)-protected α-imino carboxylic acid derivatives [16,17,18,19,20]. This strategy for constructing noncanonical amino acids enables the generation of a wide array of amino acid structures with diverse side chains by varying the nucleophiles. Furthermore, the Nps group can be removed under mild conditions, providing broad functional group tolerance and rendering this method suitable for the synthesis of peptides containing noncanonical amino acids [16,18]. We envisioned that extending the nucleophile scope to include enolizable aldehydes would broaden the synthetic versatility of this approach, enabling the preparation of homoserine derivatives. Herein, we report an asymmetric Mannich reaction using N-Nps iminoacetamide as a model substrate for N-Nps imino peptides.

2. Results and Discussion

A dichloromethane solution of Nps-iminoacetamide 1 and hexanal (2a; 1.5 equiv) was stirred at room temperature for 18 h in the presence of L-proline (3; 25 mol%). However, the desired adduct 5 was not obtained (Table 1, entry 1). Remarkably, when the reaction was conducted with triethylamine as an additive [21,22], a trace amount of hemiaminals 6a and epi-6a, presumably arising from cyclization of 5, was obtained (entry 2). Proline-catalyzed reactions are known to be enhanced by the use of hydrogen-bond-donor co-catalysts, such as thiourea derivatives [23,24,25]. The combined use of thiourea 4 and triethylamine improved the combined yield of 6a and epi-6a to 24% (entry 3). The enantiomeric excess (ee) of 6a was determined to be 92% by chiral stationary-phase HPLC analysis. Although the ee of epi-6a was also measured, the values proved unreliable—varying over repeated analyses due to the limited amount of available material—and therefore are not reported herein. Substituting triethylamine with 1,8-diazabicyclo[5.4.0]-undec-7-ene (DBU) led to sluggish conversion, giving only trace amounts of the hemiaminals (entry 4). Use of the guanidine-type base 1,5,7-triazabicyclo[4.4.0]dec-5-ene (TBD) gave the hemiaminals in slightly lower yield (18%) compared to triethylamine (entry 5). The use of the inorganic base Cs2CO3 decreased the yield, likely due to its limited solubility (entry 8). Increasing the loadings of 3, 4, and triethylamine led to enhanced formation of unidentified byproducts, presumably resulting from side reactions between the aldehyde and an Nps-amine generated via hydrolysis of 1, without improving the hemiaminal yields (entry 9). Lowering the reaction temperature to 0 °C effectively suppressed side reactions, resulting in combined yield of 56% for the hemiaminals (entry 10), although catalytic amounts of 3, 4, and triethylamine gave poor yields (entry 11). Increasing the amount of the reagents likewise resulted in a diminished outcome (entry 12). When the reaction was conducted in polar solvents such as DMSO or DMF, no reaction occurred (entries 6 and 7). Among the solvents tested, chloroform gave the highest product yields (entries 6, 7, and 13–15).
Other aldehydes were examined as nucleophiles (Table 2). Although the yields and diastereoselectivity were lower than those obtained with 2a, the reactions of branched aldehyde 2b afforded the corresponding product with excellent enantioselectivity (entry 2). This observation indicates that steric hindrance arising from the R group in the aldehydes plays an important role in enantioinduction in this reaction. Phenyl-substituted aldehyde 2c and aldehyde 2d, featuring a fatty acid-like moiety, were also tolerated (entries 3 and 4). Furthermore, an amino group protected as a carbamate proved compatible under the reaction conditions (entry 5).
To gain insight into the reaction mechanism, control experiments were conducted (Scheme 1). The reaction of tertiary amide 7 under the optimized conditions failed to produce the corresponding adduct 8, with 7 recovered in 18% yield (Scheme 1a). Imino ester 9, expected to be more electrophilic than the corresponding amide 1, gave only a trace amount of adduct 10 along with recovered 9 (43%). These results indicate that the subsequent cyclization step, which requires the presence of the amide N–H moiety, is crucial for the progress of the reaction [26].
Next, the reversibility of the cyclization step was investigated (Scheme 2). When 6a and epi-6a were separately subjected to the optimized Mannich reaction conditions, both compounds were recovered quantitatively without erosion of enantiomeric purity. These results suggest that the cyclization step proceeds irreversibly, stabilizing the otherwise labile intermediate 5 through its conversion into the more stable products 6a and epi-6a.
Finally, the conversion of the products into a homoserine-containing peptide was explored (Scheme 3). Reduction of the mixture with sodium borohydride in ethanol successfully afforded the homoserine derivative 11 as a sole diastereomer. The Nps group of 11 was then removed using 2-mercaptopyridine (2-PySH), and subsequent condensation with Fmoc-protected glycine yielded homoserine-containing dipeptide 12. Throughout these transformations, the enantiomeric purity was fully preserved.
The 3,4-cis configuration of 6a was established after its conversion to cyclic carbamate 13 through sodium borohydride reduction, Nps removal, and subsequent cyclization with triphosgene, on the basis of the large coupling constant (11 Hz) observed between the methine protons (Scheme 4). The relative configuration of the hemiaminal moieties was determined via nuclear Overhauser effect spectroscopy (NOESY), which revealed a clear correlation between the hemiaminal methine proton and a proton on the butyl side chain in 6a, whereas no such correlation was observed in epi-6a (See Supplementary Materials). These observations indicate (3R*,4S*,5R*) and (3R*,4S*,5S*) configurations for 6a and epi-6a, respectively. This assignment is further supported by DP4 analysis [27] comparing the experimental and calculated 13C NMR data (Table 3).
The absolute configuration of 6a was assigned by comparison of its experimental electronic circular dichroism (ECD) spectrum with spectra calculated by time-dependent density functional theory (TD-DFT) (Figure 1) [28,29]. Conformation analysis of 6a was performed using the Merck Molecular Force Field (MMFF) to identify conformers with significant populations. The geometries of the resulting conformers were subsequently optimized at the B3LYP-D3/6-31G* theoretical level, incorporating solvent effects for methanol via the polarizable continuum model (PCM). ECD spectra were then computed at the TD-CAM-B3LYP/6-31+G* theoretical level with PCM solvation. Comparison of the experimentally recorded ECD spectrum of 6a in methanol with the Bolzmann-weighted average of the calculated spectra led to the assignment of the absolute configuration of 6a as 3R,4S,5R. The relative and absolute configurations of the other products were tentatively assigned by analogy.

3. Materials and Methods

3.1. General Information

All anhydrous reactions were carried out under a positive atmosphere of argon in dried glassware. Dehydrated solvents were purchased for the reactions and used without further desiccation. Analytical thin-layer chromatography was performed on Merck TLC silica gel 60F254 silica gel plates. Visualization was accomplished with molibudenium phosphate, p-anisaldehyde, Hannessian’s cocktail or ninhydrin. Column chromatography was performed using Silica Gel 60N (particle size 0.040–0.050 mm) purchased from Kanto Chemical Co., Inc. (Tokyo, Japan). NMR spectra were recorded using a Bruker AV400N or JEOL JNM-ECZL500R (JEOL Ltd., Tokyo, Japan) in the stated solvents using tetramethylsilane as an internal standard. Chemical shifts were reported in parts per million (ppm) on the δ scale from an internal standard (NMR descriptions: s = singlet, d = doublet, t = triplet, m = multiplet, br = broad). Coupling constants, J, are reported in Hertz. Mass spectra were recorded on a Waters/Micromass SQD2, MICROMASS® LCT PREMIERTM (ESI-TOF) (Waters Corp., Milford, MA, USA). Optical rotations were measured using a JASCO P-2200 polarimeter (JASCO Corp., Tokyo, Japan) (concentration in g·dL−1). IR was measured using a JEOL FT-IR 6200 (JASCO Corp., Tokyo, Japan). Melting point was determined on J-SCIENCE RFS-10 (J-Science Lab. Co. Ltd., Kyoto, Japan). High-performance liquid chromatography (HPLC) analyses were performed on a Shimadzu PDA Detector SPD-M20A (Shimadzu Corp., Kyoto, Japan) equipped with two LC-20AD pumps. Unless otherwise noted, reagents were used without further purification. ECD spectra was measured by a JASCO J-1500 (JASCO Corp., Tokyo, Japan) spectrophotometer. The imines 1 [16], 7 [20], 9 [30], thiourea 4 [31], and aldehyde 2e [32] were prepared according to the literature procedures.

3.2. General Procedure for Mannich Reaction of N-Nps Imino Acetamide 1: (3R,4S,5R)-4-Butyl-5-hydroxy-1-methyl-3-(2-nitrophenylthioamino)pyrrolidin-2-one (6a) and (3R,4S,5S)-4-Butyl-5-hydroxy-1-methyl-3-(2-nitrophenylthioamino)pyrrolidin-2-one (epi-6a)

A solution of 3 (23 mg, 0.20 mmol), 4 (0.19 g, 0.38 mmol), and Et3N (20 mg, 0.20 mmol) in CHCl3 (2.0 mL) was stirred at 0 °C. After 5 min, freshly distilled 2a (37 μL, 0.30 mmol) was added, and the mixture was stirred at 0 °C for 5 min. Then, 1 (47.9 mg, 0.200 mmol) was added, and the mixture was stirred at 0 °C. After 18 h, the mixture was purified by silica gel flash chromatography (CHCl3/acetone 9:1) to give an 83:17 mixture of 6a with 92% ee and epi-6a (39.6 mg, 58% yield). The ratio of 6a and epi-6a was determined by the integral area of 1H NMR signals at 4.89 and 5.00 ppm. The ee was determined by HPLC analysis (Daicel Chiralpak AD-H; hexane/i-PrOH 90:10; 1.0 mL/min; 254 nm; 6a: 15.2 min ent-6a: 18.7 min). The diastereomers were separated by silica gel column chromatography (hexane/ethyl acetate 1:1) for characterization.
6a: Yellow oil. [α]25D +78 (c 1.61, CHCl3). 1H NMR (500 MHz, CDCl3): δ 8.28 (dd, J = 8.0, 1.0 Hz, 1H), 8.10 (dd, J = 8.0, 1.0 Hz, 1H), 7.66 (td, J = 8.0, 1.0 Hz, 1H), 7.27 (td, J = 8.0, 1.0 Hz, 1H), 4.89 (s, 1H), 4.00 (dd, J = 7.0, 4.0 Hz, 1H), 3.34 (d, J = 4.0 Hz, 1H), 2.94 (s, 3H), 2.61 (br s, 1H), 2.38 (m, 1H), 1.75–1.59 (m, 2H), 1.44–1.32 (m, 4H), 0.93 (t, J = 7.0 Hz, 3H). 13C NMR (125 MHz, CDCl3): δ 173.2, 144.6, 142.8, 134.2, 126.0, 125.0, 124.3, 87.1, 60.9, 45.8, 29.2, 27.7, 26.3, 22.8, 14.0. LRMS (ESI) (m/z): 362 [M+Na]+. HRMS (ESI) (m/z): [M+H]+ calcd for C15H22N3O4S, 340.1331; found, 340.1344. IR (NaCl): 2954, 2932, 2862, 1682, 1591, 1563, 1510, 1335, 1305, 736 cm−1.
epi-6a: Yellow powder of mp. 111–116 °C. [α]25D +10 (c 1.42, CHCl3). 1H NMR (500 MHz, CDCl3): δ 8.34 (dd, J = 8.5, 1.0 Hz, 1H), 8.26 (dd, J = 8.5, 1.0 Hz, 1H), 7.71 (td, J = 8.5, 1.0 Hz, 1H), 7.28 (td, J = 8.5, 1.0 Hz, 1H), 5.00 (dd, J = 5.0, 8.0 Hz, 1H), 3.54 (t, J = 7.0 Hz, 1H), 3.32 (d, J = 7.0 Hz, 1H), 3.30 (d, J = 8.0 Hz, 1H), 2.94 (s, 3H), 2.28 (dtd, J = 8.0, 7.0, 5.0 Hz, 1H), 1.78–1.65 (m, 2H), 1.48–1.38 (m, 4H), 0.95 (t, J = 7.0 Hz, 3H). 13C NMR (125 MHz, CDCl3): δ 173.4, 144.5, 142.4, 134.1, 125.6, 125.05, 125.02, 85.6, 63.2, 42.9, 29.6, 27.7, 23.9, 22.9, 14.0. LRMS (ESI) (m/z): 362 [M+Na]+. HRMS (ESI) (m/z): [M+H]+ calcd for C15H22N3O4S, 340.1331; found, 340.1334. IR (NaCl): 3335, 2953, 2929, 2859, 1674, 1591, 1563, 1509, 1336, 1303 cm−1.
(3R,4S,5R)-5-Hydroxy-4-isopropyl-1-methyl-3-(2-nitrophenylthioamino)pyrrolidin-2-one (6b) and (3R,4S,5S)-5-hydroxy-4-isopropyl-1-methyl-3-(2-nitrophenylthioamino)pyrrolidin-2-one (epi-6b):
A similar procedure to that described for 6a and epi-6a, using 2b (33 μL, 0.31 mmol) instead of 2a, gave a 54:46 mixture of 6b with 97% ee and epi-6b (14.1 mg, 22% yield). The ratio of 6b and epi-6b was determined by the integral area of 1H NMR signals at 4.91 and 5.01 ppm. The ee was determined by HPLC analysis (Daicel Chiralpak AD-H; hexane/i-PrOH 92.5:7.5; 1.0 mL/min; 254 nm; 6b: 23.4 min ent-6b: 29.1 min). The diastereomers were separated by silica gel column chromatography (hexane/ethyl acetate 1:2) for characterization.
6b: Pale yellow oil. [α]25D +93 (c 0.26, CHCl3). 1H NMR (500 MHz, CDCl3): δ 8.31 (dd, J = 8.5, 1.5 Hz, 1H), 8.05 (dd, J = 8.5, 1.5 Hz, 1H), 7.69 (td, J = 8.5, 1.0 Hz, 1H), 7.30 (td, J = 8.5, 1.0 Hz, 1H), 4.91 (d, J = 4.5 Hz, 1H), 4.00 (dd, J = 8.0, 3.0 Hz, 1H), 3.46 (d, J = 3.0 Hz, 1H), 2.93 (s, 3H), 2.36 (dd, J = 8.0, 3.0 Hz, 1H), 2.26 (m, 1H), 2.23 (m, 1H), 1.10 (d, J = 7.0 Hz, 3H), 0.73 (d, J = 7.0 Hz, 3H). 13C NMR (125 MHz, CDCl3): δ 173.3, 144.3, 143.1, 134.3, 126.2, 125.1, 124.3, 84.3, 59.6, 50.4, 27.1, 25.1, 21.1, 17.4. LRMS (ESI) (m/z): 348 [M+Na]+. HRMS (ESI) (m/z): [M+H]+ calcd for C14H20N3O4S, 326.1175; found, 326.1167. IR (NaCl): 2969, 2900, 2831, 1673, 528, 444, 409 cm−1.
epi-6b: Pale yellow oil. [α]25D +4 (c 0.31, CHCl3). 1H NMR (400 MHz, CDCl3): δ 8.29 (d, J = 8.0 Hz, 1H), 8.27 (d, J = 8.0 Hz, 1H), 7.71 (t, J = 8.0 Hz, 1H), 7.29 (t, J = 8.0 Hz, 1H), 5.01 (d, J = 6.5, 5.0 Hz, 1H), 3.62 (t, J = 7.2 Hz, 1H), 3.29 (m, 1H), 2.94 (s, 3H), 2.13 (m, 1H), 1.85 (m, 1H), 1.14 (d, J = 6.5 Hz, 3H), 1.11 (d, J = 6.5 Hz, 3H). 13C NMR (125 MHz, CDCl3): δ 173.6, 144.4, 142.5, 134.0, 125.6, 125.24, 125.16, 85.4, 62.6, 50.8, 27.6, 23.4, 21.4, 20.2. LRMS (ESI) (m/z): 348 [M+Na]+. HRMS (ESI) (m/z): [M+H]+ calcd for C14H20N3O4S, 326.1175; found, 326.1184. IR (NaCl): 3740, 3672, 3645, 3613, 2928, 769, 527, 4443, 409 cm−1.
(3R,4S,5R)-4-Benzyl-5-hydroxy-1-methyl-3-(2-nitrophenylthioamino)pyrrolidin-2-one (6c) and (3R,4S,5S)-4-Benzyl-5-hydroxy-1-methyl-3-(2-nitrophenylthioamino)pyrrolidin-2-one (epi-6c):
A similar procedure to that described for 6a and epi-6a, using 2c (40 μL, 0.38 mmol) instead of 2a, gave an 82:18 mixture of 6c with 89% ee and epi-6c (15.8 mg, 21% yield). The ratio of 6c and epi-6c was determined by the integral area of 1H NMR signals at 4.80 and 4.85 ppm. The ee was determined by HPLC analysis (Daicel Chiralpak AD-H; hexane/i-PrOH 90:10; 1.0 mL/min; 254 nm; 6c: 29.1 min ent-6c: 32.3 min). The diastereomers were separated by silica gel column chromatography (hexane/ethyl acetate 1:2) for characterization.
6c: Pale yellow oil. [α]25D +63 (c 1.33, CHCl3). 1H NMR (500 MHz, CDCl3): δ 8.30 (d, J = 8.5 Hz, 1H), 8.05 (d, J = 8.5 Hz, 1H), 7.68 (t, J = 8.5 Hz, 1H), 7.34 (t, J = 7.5 Hz, 2H), 7.30 (t, J = 7.5 Hz, 1H), 7.26–7.19 (m, 3H), 4.79 (d, J = 3.5 Hz, 1H), 4.12 (dd, J = 7.0, 3.0 Hz, 1H), 3.50 (d, J = 3.0 Hz, 1H), 3.17 (dd, J = 14.5, 4.5 Hz, 1H), 2.91 (s, 3H), 2.81 (dddd, J = 12.0, 7.0, 4.5, 3.5 Hz, 1H), 2.47 (brs, 1H), 2.20 (dd, J = 14.5, 12.0 Hz, 1H). 13C NMR (100 MHz, CDCl3): δ 172.9, 144.2, 143.1, 138.7, 134.3, 128.9, 128.8, 126.6, 126.1, 125.1, 124.2, 85.8, 60.4, 46.9, 32.9, 27.8. LRMS (ESI) (m/z): 396 [M+Na]+. HRMS (ESI) (m/z): [M+H]+ calcd for C18H20N3O4S, 374.1175; found, 374.1153. IR (NaCl): 3653, 3029, 2936, 2867, 1680, 1503, 1333, 468, 458, 435 cm−1.
epi-6c: Pale yellow oil. [α]25D +0.7 (c 0.26, CHCl3). 1H NMR (400 MHz, CDCl3): δ 8.34 (dd, J = 8.0, 1.2 Hz, 1H), 8.30 (dd, J = 8.0, 1.2 Hz, 1H), 7.71 (t, J = 8.0 Hz, 1H), 7.38–7.24 (m, 6H), 4.85 (dd, J = 6.8, 4.8 Hz, 1H), 3.65 (t, J = 7.2 Hz, 1H), 3.27 (d, J = 7.2 Hz, 1H), 3.20–3.09 (m, 2H), 2.91 (s, 3H), 2.81 (m, 1H), 2.73 (m, 1H). 13C NMR (100 MHz, CDCl3): δ 172.9, 144.3, 142.6, 138.6, 134.2, 128.9, 128.8, 126.6, 125.7, 125.2, 125.0, 85.1, 63.2, 44.3, 30.4, 27.7. LRMS (ESI) (m/z): 396 [M+Na]+. HRMS (ESI) (m/z): [M+Na]+ calcd for C18H19N3NaO4S, 396.0994; found, 396.0988. IR (NaCl): 3653, 2969, 2936, 2862, 1501, 467, 460, 420 cm−1.
(3R,4S,5R,Z)-5-Hydroxy-1-methyl-3-(2-nitrophenylthioamino)-4-(oct-2-enyl)pyrrolidin-2-one (6d) and (3R,4S,5S,Z)-5-Hydroxy-1-methyl-3-(2-nitrophenylthioamino)-4-(oct-2-enyl)pyrrolidin-2-one (epi-6d):
A similar procedure to that described for 6a and epi-6a, using 2d (55 μL, 0.33 mmol) instead of 2a, gave an 81:19 mixture of 6d with 81% ee and epi-6d (17.6 mg, 22% yield). The ratio of 6d and epi-6d was determined by the integral area of 1H NMR signals at 4.83 and 5.00 ppm. The ee was determined by HPLC analysis (COSMOSIL CHiRAL 3A; hexane/i-PrOH 90:10; 1.0 mL/min; 254 nm; 6d: 10.8 min, ent-6d: 11.9 min). The diastereomers were separated by silica gel column chromatography (hexane/ethyl acetate 2:3) for characterization.
6d: Pale yellow oil. [α]25D +36 (c 0.66, CHCl3). 1H NMR (500 MHz, CDCl3): δ 8.30 (dd, J = 8.5, 1.0 Hz, 1H), 8.07 (dd, J = 8.5, 1.0 Hz, 1H), 7.69 (td, J = 8.5, 1.0 Hz, 1H), 7.29 (td, J = 8.5, 1.0 Hz, 1H), 5.62 (m, 1H), 5.38 (m, 1H), 4.83 (s, 1H), 4.04 (dd, J = 7.0, 3.5 Hz, 1H), 3.42 (d, J = 3.5 Hz, 1H), 2.93 (s, 3H), 2.54–2.46 (m, 2H), 2.37 (dt, J = 15.0, 4.0 Hz, 1H), 2.05–1.90 (m, 3H), 1.40–1.24 (m, 7H), 0.89 (t, J = 7.0 Hz, 3H). 13C NMR (100 MHz, CDCl3): δ 173.0, 144.3, 143.1, 134.3, 133.4, 126.1, 125.5, 125.0, 124.3, 86.5, 60.3, 45.7, 31.5, 29.2, 27.7, 27.4, 24.8, 22.6, 14.0. LRMS (ESI) (m/z): 416 [M+Na]+. HRMS (ESI) (m/z): [M+H]+ calcd for C19H28N3O4S, 394.1801; found, 394.1815. IR (NaCl): 3561, 2927, 1679, 1509, 769, 527, 500, 445, 410 cm−1.
epi-6d: Pale yellow oil. [α]25D −2 (c 0.27, CHCl3). 1H NMR (400 MHz, CDCl3): δ 8.33 (dd, J = 8.0, 0.8 Hz, 1H), 8.28 (dd, J = 8.0, 0.8 Hz, 1H), 7.72 (td, J = 8.0, 0.8 Hz, 1H), 7.30 (td, J = 8.0, 0.8 Hz, 1H), 5.54 (m, 1H), 5.46 (m, 1H), 5.01 (dd, J = 8.0, 4.8 Hz, 1H), 3.63 (t, J = 6.4 Hz, 1H), 3.26 (d, J = 6.4 Hz, 1H), 2.94 (s, 3H), 2.74 (m, 1H), 2.53–2.43 (m, 3H), 2.15–2.08 (m, 2H), 1.44–1.25 (m, 6H), 0.90 (t, J = 6.8 Hz, 3H). 13C NMR (125 MHz, CDCl3): δ 172.7, 144.3, 142.6, 134.2, 133.1, 125.73, 125.66, 125.1, 125.0, 85.2, 62.8, 42.8, 31.5, 29.7, 29.2, 27.5, 22.6, 22.3, 14.1. LRMS (ESI) (m/z): 416 [M+Na]+. HRMS (ESI) (m/z): [M+H]+ calcd for C19H28N3O4S, 394.1801; found, 394.1783. IR (NaCl): 3346, 3007, 2957, 2925, 2854, 1676, 1510, 1335, 1260 cm−1.
(3R,4S,5R)-4-(4-tert-Butoxycarbonylaminobutyl)-5-hydroxy-1-methyl-3-(2-nitrophenylthioamino)pyrrolidin-2-one (6e) and (3R,4S,5S)-4-(4-tert-Butoxycarbonylaminobutyl)-5-hydroxy-1-methyl-3-(2-nitrophenylthioamino)pyrrolidin-2-one (epi-6e):
A similar procedure to that described for 6a and epi-6a, using 2e (65 mg, 0.33 mmol) instead of 2a, gave a 76:24 mixture of 6e with 89% ee and epi-6e (25.6 mg, 28% yield). The ratio of 6e and epi-6e was determined by the integral area of 1H NMR signals at 4.84 and 4.99 ppm. The ee was determined by HPLC analysis (COSMOSIL CHiRAL 3C; hexane/i-PrOH 80:20; 1.0 mL/min; 254 nm; 6e: 24.1 min ent-6e: 18.5 min). The diastereomers were separated by preparative TLC (hexane/ethyl acetate 1:3) for characterization.
6e: Pale yellow oil. [α]21D +38 (c 0.60, CHCl3). 1H NMR (400 MHz, CDCl3): δ 8.22 (dd, J = 8.4, 1.2 Hz, 1H), 8.03 (dd, J = 8.4, 1.2 Hz, 1H), 7.62 (td, J = 8.4, 1.2 Hz, 1H), 7.22 (td, J = 8.4, 1.2 Hz, 1H), 4.81 (s, 1H), 4.55 (br s, 1H), 3.94 (dd, J = 7.2, 3.6 Hz, 1H), 3.33 (d, J = 3.6 Hz, 1H), 3.06 (td, J = 9.4, 6.2 Hz, 2H), 2.86 (s, 3H), 2.31 (m, 1H), 1.70–1.42 (m, 6H), 1.36 (s, 9H). 13C NMR (125 MHz, CDCl3): δ 172.9, 156.3, 144.4, 143.0, 134.3, 126.1, 125.0, 124.4, 87.0, 79.4, 60.6, 45.6, 30.3, 28.42, 28.39, 28.35, 26.3, 24.0. HRMS (ESI) (m/z): [M+Na]+ calcd for C20H30N4NaO6S, 477.1784; found, 477.1800. IR (ATR): 3344, 3331, 2926, 2859, 1682, 1510, 1336, 1251 cm−1.
epi-6e: Pale yellow oil. [α]22D +0.6 (c 0.17, CHCl3). 1H NMR (400 MHz, CDCl3): δ 8.43 (d, J = 8.0 Hz, 1H), 8.26 (d, J = 8.0 Hz, 1H), 7.73 (t, J = 8.0 Hz, 1H), 7.26 (t, J = 8.0 Hz, 1H), 4.99 (dd, J = 5.0, 4.0 Hz, 1H), 4.69 (m, 1H), 4.48 (m, 1H), 3.49–3.35 (m, 2H), 3.06 (m, 1H), 2.96 (s, 3H), 1.94–1.50 (m, 6H), 1.45 (s, 9H). 13C NMR (125 MHz, CDCl3): δ 173.5, 157.1, 145.5, 142.3, 134.2, 125.6, 125.1, 124.9, 85.0, 80.0, 64.8, 43.5, 38.8, 29.7, 29.2, 28.3, 27.8, 22.7. HRMS (ESI) (m/z): [M+Na]+ calcd for C20H30N4NaO6S, 477.1784; found, 477.1779. IR (ATR): 3391, 3319, 2926, 2854, 1683, 1512, 1337, 1252 cm−1.

3.3. Mannich Reaction of Imino Ester 9 (Scheme 1)

Methyl 3-Formyl-2-(2-nitrophenylthioamino)heptanoate (10)
A similar procedure to that described for 6a and epi-6a, using 9 (48.0 mg, 0.200 mmol) instead of 1, gave 10 (10.8 mg, 16% yield, 50:50 dr): [α]25D +36 (c 0.66, CHCl3).
1H NMR (400 MHz, CDCl3): δ 9.75 (s, 0.5H), 9.67 (s, 0.5H), 8.29 (d, J = 8.0 Hz, 1H), 8.04 (d, J = 8.0 Hz, 0.5H), 7.90 (d, J = 8.0 Hz, 0.5H), 7.64 (t, J = 8.0 Hz, 1H), 7.28 (t, J = 8.0 Hz, 1H), 3.96 (dd, J = 8.4, 3.6 Hz, 0.5H), 3.82 (s, 1.5H), 3.81 (s, 1.5H), 3.80 (m, 0.5H), 3.64 (d, J = 8.4 Hz, 0.5H), 3.52 (d, J = 8.4 Hz, 0.5H), 2.94 (dd, J = 12.0, 7.0 Hz, 0.5H), 2.82 (dt, J = 8.4, 4.4 Hz, 0.5H), 1.99–1.78 (m, 1H), 1.73–1.52 (m, 1.5H), 1.45–1.26 (m, 3.5H), 0.91 (t, J = 6.8 Hz, 1.5H), 0.89 (t, J = 6.8 Hz, 1.5H). 13C NMR (100 MHz, CDCl3): δ 201.9, 201.5, 172.6, 144.6, 144.0, 142.62, 142.59, 133.9, 133.8, 125.8, 125.03, 124.95, 124.5, 124.4, 63.71, 63.69, 54.6, 54.4, 52.8, 30.9, 29.6, 29.5, 25.2, 24.7, 22.6, 22.5, 13.8. LRMS (ESI) (m/z): 341 [M+H]+. HRMS (ESI) (m/z): [M+H]+ calcd for C15H21N2O5S, 341.1171; found, 341.1162. IR (NaCl): 3340, 3096, 2955, 2929, 2859, 1728, 1592, 1564, 1511, 1336, 449 cm−1.

3.4. Synthesis of the Dipeptide 12 Bearing Homoserine Derivative (Scheme 3)

(2R,3S)-3-(Hydroxymethyl)-N-methyl-2-(2-nitrophenylthioamino)heptanamide (11)
To a solution of an 83:17 mixture of 6a and epi-6a (88.5 mg, 0.261 mmol) in EtOH (7 mL), NaBH4 was added (49 mg, 1.3 mmol) at rt, and the mixture was stirred for 17 h. Then, the mixture was diluted with water and extracted with CH2Cl2. The organic layer was dried over Na2SO4, and evaporated to give 11 (69.7 mg, 79% yield) as a yellow solid with mp 149–155 °C: [α]25D −195 (c 1.29, CHCl3).
1H NMR (500 MHz, CDCl3): δ 8.27 (dd, J = 8.5, 1.0 Hz, 1H), 7.87 (dd, J = 8.5, 1.0 Hz, 1H), 7.64 (td, J = 8.5, 1.0 Hz, 1H), 7.28 (td, J = 8.5, 1.0 Hz, 1H), 6.52 (br s, 1H), 3.93–3.85 (m, 2H), 3.70 (m, 1H), 3.54 (dd, J = 6.5, 4.0 Hz, 1H), 2.88 (d, J = 5.0 Hz, 3H), 2.62 (br s, 1H), 2.04 (m, 1H), 1.54 (m, 1H), 1.42–1.28 (m, 5H), 0.91 (t, J = 7.0 Hz, 3H). 13C NMR (125 MHz, CDCl3): δ 173.1, 144.8, 133.8, 126.0, 125.0, 124.2, 115.9, 67.2, 63.1, 44.0, 29.8, 27.0, 26.3, 22.9, 14.0. LRMS (ESI) (m/z): 364 [M+Na]+. HRMS (ESI) (m/z): [M+H]+ calcd for C15H24N3O4S, 342.1488; found, 342.1499. IR (NaCl): 3543, 3291, 3104, 2932, 2862, 1647, 1505, 1336, 1306, 731 cm−1.
(2R,3S)-2-(9H-Fluoren-9-yl)methyloxycarbonylamino-3-hydroxymethyl-N-methyl-heptanamide (12)
To a solution of 11 (58.9 mg, 0.173 mmol) in CHCl3 (2 mL), 2-mercaptopyridine was added (0.19 g, 1.7 mmol), and the mixture was stirred at rt for 1 h. The stirred mixture was heated in an oil bath at 50 °C for 5 h, concentrated in vacuo, and passed through silica gel (40 g) eluted with CHCl3/MeOH (5:1 to 2:1) to give a crude amine as a yellow oil (32 mg). To s solution of Fmoc-Gly-OH (48 mg, 0.16 mmol), and HOBt·H2O (32 mg, 0.24 mmol) in CHCl3 (2 mL), EDCI·HCl was added (46 mg, 0.24 mmol) and the crude amine in CHCl3 (1 mL), successively, at room temperature, and the mixture was stirred at the same temperature for 12 h. The mixture was diluted with CHCl3, washed with 1M HCl followed by H2O, dried over Na2SO4, evaporated in vacuo, and purified by silica gel column chromatography (EtOAc) to afford 12 with 92% ee (29.6 mg, 40% yield) as a white solid of mp. 188–198 °C: [α]25D +36 (c 0.66, CHCl3). The ee was determined by HPLC analysis (Daicel Chiralpak AD-H; hexane/i-PrOH 80:20; 1.0 mL/min; 254 nm; 12: 7.0 min, ent-12: 8.6 min)
1H NMR (500 MHz, DMSO-d6): δ 7.88 (d, J = 7.5 Hz, 2H), 7.86–7.80 (m, 2H), 7.70 (d, J = 7.5 Hz, 2H), 7.61 (t, J = 6.0 Hz, 1H), 7.41 (t, J = 7.5 Hz, 2H), 7.32 (t, J = 7.5 Hz, 2H), 4.56 (t, J = 4.5 Hz, 1H), 4.30–4.19 (m, 4H), 3.67 (dd, J = 17.0, 6.0 Hz, 1H), 3.64 (dd, J = 17.0, 6.0 Hz, 1H), 2.57 (d, J = 4.5 Hz, 1H), 1.77 (m, 1H), 1.38–1.13 (m, 6H), 0.82 (t, J = 6.5 Hz, 3H). 13C NMR (125 MHz, DMSO-d6): δ 171.5, 169.2, 156.6, 143.9, 140.7, 127.7, 127.2, 125.3, 120.2, 65.8, 60.3, 54.1, 46.6, 43.6, 41.6, 28.7, 27.1, 25.6, 22.4, 14.0. LRMS (ESI) (m/z): 468 [M+H]+. HRMS (ESI) (m/z): [M+H]+ calcd for C26H34N3O5, 468.2498; found, 468.2522. IR (KBr): 3653, 3065, 3019, 2924, 2852, 2359, 2331, 1711, 733, 483 cm−1.

3.5. Determination of Relative Configuration of 6a (Scheme 4)

(4R,5S)-5-Butyl-N-methyl-2-oxo-1,3-oxazinane-4-carboxamide (13)
To a solution of 7 (17.5 mg, 51.3 μmol) in CHCl3 (1 mL) 2-mercaptopyridine was added (57 mg, 0.51 mmol). The resulting mixture was stirred at 50 °C for 5 h, concentrated in vacuo, and passed through silica gel (10 g) using CHCl3/MeOH (5:1 to 2:1) as the eluent to give a crude amine as a yellow oil (12.2 mg). To a solution of the crude amine and Et3N (72 μL, 0.51 mmol) in CH2Cl2 (1 mL) triphosgene was added (17 mg, 56 μmol) at 0 °C, and the resulting mixture was stirred at rt. After 30 min, the reaction was quenched by the addition of saturated aqueous NaHCO3, and was extracted with CH2Cl2. The aqueous later was further extracted with CH2Cl2 (twice), and the combined organic layers were dried over Na2SO4, and evaporated in vacuo to give a crude amine such as a yellow wax (20 mg).
1H NMR (500 MHz, CDCl3): δ 4.58 (dd, J = 11.5, 5.0 Hz, 1H), 4.35 (d, J = 11.0 Hz, 1H), 4.10 (dd, J = 11.0, 11.5 Hz, 1H), 3.17 (d, J = 2.0 Hz, 3H), 2.35–2.24 (m, 2H), 1.44–1.27 (m, 7H), 0.93 (t, J = 7.0 Hz, 3H).

3.6. Calculations of the 13C NMR Chemical Shifts (Table 3)

Conformational searches for each diastereomer were conducted using the MMFF in Spartan 18 program [33]. Conformers exhibiting relative energies greater than 15 kJ/mol above the lowest energy conformer, as determined by single-point energy calculations at the ωB97X-D/6-31G* theoretical level, were discarded. The remaining conformers were fully optimized at the ωB97X-D/6-31G* level and subjected to 13C NMR calculations at the same theoretical level. The computed chemical shifts were empirically corrected using the Spartan 18 program and averaged according to Bolzmann populations derived from single-point energy calculations at the ωB97X-V/6-311+G(2df,2p) theoretical level.

3.7. Calculations of the ECD Spectra (Figure 1)

Conformational searches of 6a were performed using the MMFF in Spartan 18 program [33]. Conformers with relative energies exceeding 15 kJ/mol above the most stable geometry, as determined by single-point energy calculations at the B3LYP-D3/6-31G*/PCM(MeOH) theoretical level, were excluded. The remaining conformers were fully optimized at the B3LYP-D3/6-31G*/PCM(MeOH) level using Gaussian 16 program [34]. The optimized geometries were subjected to TD-DFT calculations at the TD-CAM-B3LYP/6-31+G*/PCM(MeOH) theoretical level. The resulting rotatory strengths for the lowest 25 excited states were converted into Gaussian-type bands with a half-width of 0.25 eV. The calculated ECD spectrum was uniformly red-shifted by 20 nm.

4. Conclusions

We have developed an asymmetric Mannich reaction of an α-Nps-imino amide with aldehyde nucleophiles. The reaction was effectively facilitated by a cooperative system composing proline, thiourea, and triethylamine. Mechanistic studies revealed that the irreversible cyclization involving the amide N–H moiety and the formyl group is crucial for suppressing undesired side reactions. The resulting cyclic hemiaminals were readily converted into a peptide incorporating a homoserine derivative. Further optimization and applications of this methodology are currently underway.

Supplementary Materials

The following supporting information can be downloaded at https://www.mdpi.com/article/10.3390/molecules31030449/s1, The copies of 1H- and 13C-NMR spectra, and chiral HPLC charts are available online.

Author Contributions

Conceptualization, T.I. and K.-i.Y.; methodology, T.I. and K.-i.Y.; validation, T.I., M.M., K.O., and G.N.; formal analysis, T.I., M.M., K.O., G.N. and K.-i.Y.; investigation, T.I., M.M., K.O. and G.N.; data curation, T.I., M.M. and K.O.; writing—original draft preparation, T.I.; writing—review and editing, T.I. and K.-i.Y.; visualization, T.I. and K.-i.Y.; supervision, K.-i.Y.; project administration, T.I. and K.-i.Y.; funding acquisition, T.I. and K.-i.Y. All authors have read and agreed to the published version of the manuscript.

Funding

This research was supported by Fugaku Trust for Medicinal Research, SGH foundation, the Japan Science Society (Sasakawa Scientific Research Grant), JST (JPMJFS2130), JSPS (KAKENHI JP24H01320), the Mochida Memorial Foundation for Medical and Pharmaceutical Research, and Tokushima University (Research Clusters Programs no. 2201004, and 2402001). C.S. thanks scholarship from JST (JPMJSP2113).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The original contributions presented in this study are included in the Supplementary Materials. Further inquiries can be directed to the corresponding authors.

Conflicts of Interest

The authors declare no conflicts of interest.

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Scheme 1. (a,b) The importance of the amide N–H moiety.
Scheme 1. (a,b) The importance of the amide N–H moiety.
Molecules 31 00449 sch001
Scheme 2. Irreversibility of the cyclization.
Scheme 2. Irreversibility of the cyclization.
Molecules 31 00449 sch002
Scheme 3. Synthesis of dipeptide 12 bearing homoserine derivative.
Scheme 3. Synthesis of dipeptide 12 bearing homoserine derivative.
Molecules 31 00449 sch003
Scheme 4. Determination of relative configuration of 6a.
Scheme 4. Determination of relative configuration of 6a.
Molecules 31 00449 sch004
Figure 1. Experimentally observed and theoretically calculated ECD spectra of 6a. The intensity of the vertical axis (Δε) in the observed spectrum (left) is scaled to 25% of that of the calculated spectrum (right).
Figure 1. Experimentally observed and theoretically calculated ECD spectra of 6a. The intensity of the vertical axis (Δε) in the observed spectrum (left) is scaled to 25% of that of the calculated spectrum (right).
Molecules 31 00449 g001
Table 1. Optimization of the Mannich reaction of N-Nps iminoacetamide[a].
Table 1. Optimization of the Mannich reaction of N-Nps iminoacetamide[a].
Molecules 31 00449 i001
EntryBase
(equiv)
3
(equiv)
4
(equiv)
SolventYield
(%)[b]
dr[c]ee of 6a
(%)[d]
1---0.25---CH2Cl2---------
2Et3N (0.25)0.25---CH2Cl2Trace------
3Et3N (0.25)0.250.50CH2Cl22481:1992
4DBU (0.25)0.250.50CH2Cl2Trace------
5TBD (0.25)0.250.50CH2Cl21880:2092
6TBD (0.25)0.250.50DMSO---------
7TBD (0.25)0.250.50DMF---------
8Cs2CO3 (0.25)0.250.50CH2Cl21086:1489
9Et3N (1.0)1.01.9CH2Cl22383:1794
10[e]Et3N (1.0)1.01.9CH2Cl25682:1895
11[e]Et3N (0.25)0.250.50CH2Cl22580:2094
12[e]Et3N (1.5)1.53.0CH2Cl22779:2191
13[e]Et3N (1.0)1.01.9CHCl35883:1792
14[e]Et3N (1.0)1.01.9Toluene3881:1992
15[e]Et3N (1.0)1.01.9THF4376:2496
[a] Reactions were performed using 1 (0.20 mmol). [b] Combined isolated yield of 6a and epi-6a. [c] Ratio of 6a and epi-6a determined by 1H NMR analysis. [d] Determined by chiral HPLC analysis. [e] Conducted at 0 °C.
Table 2. Scope of the nucleophile[a].
Table 2. Scope of the nucleophile[a].
Molecules 31 00449 i002
EntryR (2)Yielddr[c]ee of 6
(%)[b] (%)[d]
1[e]Bu (2a)5883:1792
2i-Pr (2b)2253:4797
3PhCH2 (2c)2182:1889
4CH3(CH2)4CH=CHCH2 (2d)2281:1981
5BocNH(CH2)4 (2e)2876:2489
[a] Reactions were performed using 1 (0.20 mmol). [b] Combined isolated yield of 6 and epi-6. [c] Ratio of 6 and epi-6 determined by 1H NMR analysis. [d] Determined by chiral HPLC analysis. [e] Data from Table 1, entry 13 for comparison.
Table 3. Observed and calculated 13C NMR chemical shifts of 6a and epi-6a and DP4 analysis.
Table 3. Observed and calculated 13C NMR chemical shifts of 6a and epi-6a and DP4 analysis.
Molecules 31 00449 i003
Observed (ppm)Calculated (ppm)
6aepi-6a3R,4S,5R3R,4S,5S3R,4R,5R3R,4R,5S
C-127.727.726.926.227.226.2
C-2173.1173.4174.0172.1175.5173.3
C-360.963.259.261.461.557.8
C-445.842.947.847.247.044.0
C-587.185.688.585.184.791.0
C-626.323.925.625.325.729.3
C-729.229.628.928.728.327.4
C-822.822.922.522.521.520.4
C-914.014.013.913.613.414.6
C-10144.6144.5144.8143.1147.1140.6
C-11142.8142.4144.9144.1144.6147.2
C-12126.0125.6127.4126.6127.4128.2
C-13124.3125.1124.0125.2123.9124.8
C-14134.2134.1133.1133.3133.1132.8
C-15125.0125.0126.0128.2125.7126.7
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Inokuma, T.; Miyamoto, M.; Okada, K.; Nagai, G.; Yamada, K.-i. Asymmetric Mannich Reaction of α-(2-Nitrophenylsulfenyl)imino Acetamide: A Cyclization-Driven Process. Molecules 2026, 31, 449. https://doi.org/10.3390/molecules31030449

AMA Style

Inokuma T, Miyamoto M, Okada K, Nagai G, Yamada K-i. Asymmetric Mannich Reaction of α-(2-Nitrophenylsulfenyl)imino Acetamide: A Cyclization-Driven Process. Molecules. 2026; 31(3):449. https://doi.org/10.3390/molecules31030449

Chicago/Turabian Style

Inokuma, Tsubasa, Maki Miyamoto, Kazuki Okada, Genki Nagai, and Ken-ichi Yamada. 2026. "Asymmetric Mannich Reaction of α-(2-Nitrophenylsulfenyl)imino Acetamide: A Cyclization-Driven Process" Molecules 31, no. 3: 449. https://doi.org/10.3390/molecules31030449

APA Style

Inokuma, T., Miyamoto, M., Okada, K., Nagai, G., & Yamada, K.-i. (2026). Asymmetric Mannich Reaction of α-(2-Nitrophenylsulfenyl)imino Acetamide: A Cyclization-Driven Process. Molecules, 31(3), 449. https://doi.org/10.3390/molecules31030449

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