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Keywords = ultrasonic relaxation spectroscopy

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17 pages, 3205 KiB  
Article
Kinetic and Structural Insights into β-Cyclodextrin Complexation with Asparagine Enantiomers: An Experimental and Theoretical Study
by Constantine Kouderis, Stefanos Tsigoias, Panagiota Siafarika and Angelos G. Kalampounias
Molecules 2025, 30(3), 523; https://doi.org/10.3390/molecules30030523 - 24 Jan 2025
Viewed by 1182
Abstract
We report on the dynamic interactions between β-cyclodextrin (β-CD) and each one of the two enantiomers of asparagine (d-Asp, l-Asp). Molecular docking methodologies were applied to elucidate the formation of the β-CD—d-Asp and β-CD—l-Asp inclusion complexes. [...] Read more.
We report on the dynamic interactions between β-cyclodextrin (β-CD) and each one of the two enantiomers of asparagine (d-Asp, l-Asp). Molecular docking methodologies were applied to elucidate the formation of the β-CD—d-Asp and β-CD—l-Asp inclusion complexes. Ultrasonic relaxation spectra revealed a single relaxation process in the frequency range studied that is attributed to the complexation between β-CD and asparagine enantiomers. Kinetic parameters and thermodynamic properties for each system were determined directly from the concentration- and temperature-dependent acoustic measurements, respectively. Both β-CD—d-Asp and β-CD—l-Asp systems revealed subtle differences in their thermodynamic and kinetic properties. The infrared absorption spectra of the host molecule, the guest enantiomers, and both inclusion complexes were recorded to verify and further elucidate the complexation mechanism. DFT methodologies were performed to calculate the theoretical IR spectra of the inclusion complexes and compared with the corresponding experimental spectra. The close resemblance between the experimental and theoretically predicted IR spectra is supportive of the formation of inclusion complexes. The encapsulation of asparagine enantiomers in β-cyclodextrin enables not only applications in drug delivery but also the detection and separation of chimeric molecules. Full article
(This article belongs to the Section Physical Chemistry)
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17 pages, 3866 KiB  
Article
The Identification of Structural Changes in the Lithium Hexamethyldisilazide–Toluene System via Ultrasonic Relaxation Spectroscopy and Theoretical Calculations
by Constantine Kouderis, Afrodite Tryfon, Themistoklis A. Kabanos and Angelos G. Kalampounias
Molecules 2024, 29(4), 813; https://doi.org/10.3390/molecules29040813 - 9 Feb 2024
Cited by 1 | Viewed by 1526
Abstract
Ultrasonic absorption measurements were carried out over a wide concentration and temperature range by means of a pulse technique to examine the structural mechanisms and the dynamical properties in lithium hexamethyldisilazide (LiHMDS)–toluene solutions. Acoustic spectra [...] Read more.
Ultrasonic absorption measurements were carried out over a wide concentration and temperature range by means of a pulse technique to examine the structural mechanisms and the dynamical properties in lithium hexamethyldisilazide (LiHMDS)–toluene solutions. Acoustic spectra revealed two distinct Debye-type relaxational absorptions attributed to the formation of trimers from dimeric and monomer units and to the formation of aggregates between a LiHMDS dimer and one toluene molecule in low and high frequencies, respectively. The formation of aggregates was clarified by means of molecular docking and DFT methodologies. The aggregation number, the rate constants and the thermodynamic properties of these structural changes were determined by analyzing in detail the concentration-dependent relaxation parameters. The low-frequency relaxation mechanism dominates the acoustic spectra in the high LiHMDS mole fractions, while the high-frequency relaxation influences the spectra in the low LiHMDS mole fractions. In the intermediate mole fraction region (0.25 to 0.46), both relaxations prevail in the spectra. The adiabatic compressibility, the excess adiabatic compressibility and the theoretically estimated mean free length revealed a crossover in the 0.25 to 0.46 LiHMDS mole fractions that signified the transition from one structural mechanism related with the hetero-association of LiHMDS dimers with toluene molecules to the other structural mechanism assigned to the formation of LiHMDS trimers. The combined use of acoustic spectroscopy with theoretical calculations permitted us to disentangle the underlying structural mechanisms and evaluate the volume changes associated with each reaction. The results were compared with the corresponding theoretically predicted volume changes and discussed in the context of the concentration effect on intermolecular bonding. Full article
(This article belongs to the Special Issue Featured Papers in Organometallic Chemistry)
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21 pages, 3462 KiB  
Article
Insight into the Structural and Dynamical Processes of Peptides by Means of Vibrational and Ultrasonic Relaxation Spectroscopies, Molecular Docking, and Density Functional Theory Calculations
by Afrodite Tryfon, Panagiota Siafarika, Constantine Kouderis and Angelos G. Kalampounias
ChemEngineering 2024, 8(1), 21; https://doi.org/10.3390/chemengineering8010021 - 6 Feb 2024
Viewed by 2424
Abstract
We report a detailed investigation of the vibrational modes, structure, and dynamics of glutathione (GSH) solutions using ultrasonic relaxation spectroscopy, FT-IR vibrational spectroscopy, and electronic absorption measurements. The experimental data were analyzed using density functional theory (DFT) and molecular docking calculations. Three distinct [...] Read more.
We report a detailed investigation of the vibrational modes, structure, and dynamics of glutathione (GSH) solutions using ultrasonic relaxation spectroscopy, FT-IR vibrational spectroscopy, and electronic absorption measurements. The experimental data were analyzed using density functional theory (DFT) and molecular docking calculations. Three distinct Debye-type relaxation processes can be observed in the acoustic spectra, which are assigned to conformational changes between GSH conformers, the self-association of GSH, and protonation processes. The standard volume changes for each process were estimated both experimentally and theoretically, revealing a close resemblance among them. The higher the effect of the relaxation process in the structure, the greater the induced volume changes. From the temperature dependence of specific acoustic parameters, the thermodynamic characteristics of each process were determined. The experimental FT-IR spectra were compared with the corresponding theoretically predicted vibrational spectra, revealing that the GSH dimers and extended conformers dominate the structure of GSH solutions in the high-concentration region. The absorption spectra in the ultraviolet region confirmed the gradual aggregation mechanism that takes place in the aqueous GSH solutions. The results of the present study were discussed and analyzed in the framework of the current phenomenological status of the field. Full article
(This article belongs to the Special Issue Process Intensification for Chemical Engineering and Processing)
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19 pages, 2535 KiB  
Article
Identification of Aggregation Processes in Hexamethylenetetramine Aqueous Solutions: A Comprehensive Raman and Acoustic Spectroscopic Study Combined with Density Functional Theory Calculations
by Stefanos Tsigoias, Michael G. Papanikolaou, Themistoklis A. Kabanos and Angelos G. Kalampounias
Molecules 2023, 28(23), 7838; https://doi.org/10.3390/molecules28237838 - 29 Nov 2023
Cited by 2 | Viewed by 1461
Abstract
Raman scattering has been employed to study in detail the concentration dependence of the vibrational modes for hexamethylenetetramine (HMTA) aqueous solutions. The formation of protonated and/or aggregated species has been clarified by comparing the experimental with the theoretically predicted vibrational spectra by means [...] Read more.
Raman scattering has been employed to study in detail the concentration dependence of the vibrational modes for hexamethylenetetramine (HMTA) aqueous solutions. The formation of protonated and/or aggregated species has been clarified by comparing the experimental with the theoretically predicted vibrational spectra by means of quantum mechanical calculations. The analysis has shown that the vibrational modes of the solutions arise from a contribution of the vibrational modes of the HMTA self-aggregates and hetero-aggregates of HMTA with water molecules that are formed in the low- and intermediate-concentration regions, respectively. The protonation of HMTA is ruled out due to the large differences between the experimental and the theoretically calculated spectra of the protonated molecules of HTMA in the fingerprint region. In the low-concentration solutions, the hetero-aggregation reaction of HMTA with water is the dominant mechanism, while at higher concentrations, a self-aggregation mechanism occurs. Ultrasonic absorption and velocity measurements were carried out for hexamethylenetetramine aqueous solutions. The acoustic spectra reveal the presence of only one single Debye-type relaxation process that is assigned to the aggregation mechanism of HMTA. The sound absorption data follow two different dependencies on the HMTA mole fraction. The crossover 0.018 mole fraction signifies two separate regions with distinct structural characteristics. The relaxation mechanism observed in dilute solutions was attributed to hetero-association of HMTA with water molecules, while at higher concentrations, the observed relaxation process was assigned to the self-association reaction of HMTA molecules. This structural transformation is also reflected in several physicochemical properties of the system, including the kinematic viscosity, the mass density, the sound speed and the adiabatic compressibility of the HMTA aqueous solutions. The combination of vibrational and acoustic spectroscopies with molecular orbital calculations allowed us to disentangle the underlying processes and to elucidate the observed relaxation mechanism in the HMTA aqueous solutions. Full article
(This article belongs to the Collection Molecular Liquids)
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16 pages, 2178 KiB  
Article
Ultrasound-Assisted Encapsulation of Citronella Oil in Alginate/Carrageenan Beads: Characterization and Kinetic Models
by Aji Prasetyaningrum, Bangkit Suryo Wicaksono, Azafilmi Hakiim, Aulia Dwi Ashianti, Sadrakh Farel Christian Manalu, Nur Rokhati, Dani Puji Utomo and Mohammad Djaeni
ChemEngineering 2023, 7(1), 10; https://doi.org/10.3390/chemengineering7010010 - 2 Feb 2023
Cited by 6 | Viewed by 4167
Abstract
The objective of this research was to investigate the effect of ultrasonication on citronella oil encapsulation using alginate/carrageenan (Alg/Carr) in the presence of sodium dodecyl sulfate (SDS). The functional groups of microparticles were characterized using Fourier transform infrared spectroscopy (FTIR), and the beads’ [...] Read more.
The objective of this research was to investigate the effect of ultrasonication on citronella oil encapsulation using alginate/carrageenan (Alg/Carr) in the presence of sodium dodecyl sulfate (SDS). The functional groups of microparticles were characterized using Fourier transform infrared spectroscopy (FTIR), and the beads’ morphologies were observed using a scanning electron microscope (SEM). The FTIR results showed that the ultrasonication process caused the C-H bonds (1426 cm−1) to break down, resulting in polymer degradation. The SEM results showed that the ultrasonication caused the presence of cavities or pores in the cracked wall and a decrease in the beads’ size. In this study, the use of ultrasound during the encapsulation of citronella oil in Alg/Carr enhanced the encapsulation efficiency up to 95–97%. The kinetic evaluation of the oil release of the beads treated with ultrasound (UTS) showed a higher k1 value of the Ritger–Peppas model than that without ultrasonication (non-UTS), indicating that the oil release rate from the beads was faster. The R/F value from the Peppas–Sahlin model of the beads treated with UTS was smaller than that of the non-UTS model, revealing that the release of bioactive compounds from the UTS-treated beads was diffusion-controlled rather than due to a relaxation mechanism. This study suggests the potential utilization of UTS for controlling the bioactive compound release rate. Full article
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20 pages, 4687 KiB  
Article
Evidence of Self-Association and Conformational Change in Nisin Antimicrobial Polypeptide Solutions: A Combined Raman and Ultrasonic Relaxation Spectroscopic and Theoretical Study
by Afrodite Tryfon, Panagiota Siafarika, Constantine Kouderis, Spyridon Kaziannis, Soghomon Boghosian and Angelos G. Kalampounias
Antibiotics 2023, 12(2), 221; https://doi.org/10.3390/antibiotics12020221 - 20 Jan 2023
Cited by 9 | Viewed by 2704
Abstract
The polypeptide Nisin is characterized by antibacterial properties, making it a compound with many applications, mainly in the food industry. As a result, a deeper understanding of its behaviour, especially after its dissolution in water, is of the utmost importance. This could be [...] Read more.
The polypeptide Nisin is characterized by antibacterial properties, making it a compound with many applications, mainly in the food industry. As a result, a deeper understanding of its behaviour, especially after its dissolution in water, is of the utmost importance. This could be possible through the study of aqueous solutions of Nisin by combining vibrational and acoustic spectroscopic techniques. The velocity and attenuation of ultrasonic waves propagating in aqueous solutions of the polypeptide Nisin were measured as a function of concentration and temperature. The computational investigation of the molecular docking between Nisin monomeric units revealed the formation of dimeric units. The main chemical changes occurring in Nisin structure in the aqueous environment were tracked using Raman spectroscopy, and special spectral markers were used to establish the underlying structural mechanism. Spectral changes evidenced the presence of the dimerization reaction between Nisin monomeric species. The UV/Vis absorption spectra were dominated by the presence of π → π* transitions in the peptide bonds attributed to secondary structural elements such as α-helix, β-sheets and random coils. The analysis of the acoustic spectra revealed that the processes primarily responsible for the observed chemical relaxations are probably the conformational change between possible conformers of Nisin and its self-aggregation mechanism, namely, the dimerization reaction. The activation enthalpy and the enthalpy difference between the two isomeric forms were estimated to be equal to ΔH1* = 0.354 ± 0.028 kcal/mol and ΔH10 = 3.008 ± 0.367 kcal/mol, respectively. The corresponding thermodynamic parameters of the self-aggregation mechanism were found to be ΔH2* = 0.261 ± 0.004 kcal/mol and ΔH20 = 3.340 ± 0.364 kcal/mol. The effect of frequency on the excess sound absorption of Nisin solutions enabled us to estimate the rate constants of the self-aggregation mechanism and evaluate the isentropic and isothermal volume changes associated with the relaxation processes occurring in this system. The results are discussed in relation to theoretical and experimental findings. Full article
(This article belongs to the Section Antimicrobial Peptides)
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10 pages, 1283 KiB  
Review
Transport Properties for Pharmaceutical Controlled-Release Systems: A Brief Review of the Importance of Their Study in Biological Systems
by Ana C. F. Ribeiro and Miguel A. Esteso
Biomolecules 2018, 8(4), 178; https://doi.org/10.3390/biom8040178 - 17 Dec 2018
Cited by 11 | Viewed by 3848
Abstract
The goal of this work was to comprehensive study the transport properties of controlled-release systems for the safe and reliable delivery of drugs. Special emphasis has been placed on the measurement of the diffusion of drugs, alone or in combination with carrier molecules [...] Read more.
The goal of this work was to comprehensive study the transport properties of controlled-release systems for the safe and reliable delivery of drugs. Special emphasis has been placed on the measurement of the diffusion of drugs, alone or in combination with carrier molecules for enhanced solubility and facilitated transport. These studies have provided detailed comprehensive information—both kinetic and thermodynamic—for the design and operation of systems for the controlled release and delivery of drugs. Cyclodextrins are among the most important carriers used in these systems. The basis for their popularity is the ability of these materials to solubilize poorly soluble drugs, generally resulting in striking increases in their water solubilities. The techniques used in these investigations include pulse voltammetry, nuclear magnetic resonance (NMR) and Raman spectroscopy, ultrasonic relaxation, and dissolution kinetics. Transport in these systems is a mutual diffusion process involving coupled fluxes of drugs and carrier molecules driven by concentration gradients. Owing to a strong association in these multicomponent systems, it is not uncommon for a diffusing solute to drive substantial coupled fluxes of other solutes, mixed electrolytes, or polymers. Thus, diffusion data, including cross-diffusion coefficients for coupled transport, are essential in order to understand the rates of many processes involving mass transport driven by chemical concentration gradients, as crystal growth and dissolution, solubilization, membrane transport, and diffusion-limited chemical reactions are all relevant to the design of controlled-release systems. While numerous studies have been carried out on these systems, few have considered the transport behavior for controlled-release systems. To remedy this situation, we decided to measure mutual diffusion coefficients for coupled diffusion in a variety of drug–carrier solutions. In summary, the main objective of the present work was to understand the physical chemistry of carrier-mediated transport phenomena in systems of controlled drug release. Full article
(This article belongs to the Special Issue Transport Properties for Pharmaceutical Controlled-Release Systems)
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