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Keywords = the narrow-ridged finless porpoise

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10 pages, 11872 KiB  
Article
Citizen Science Illuminates a City-Dwelling Whale: A Report on the Large Aggregation of Narrow-Ridged Finless Porpoises in Tokyo Bay, Japan
by Gen Nakamura and Ayumi Hirose
Fishes 2025, 10(5), 237; https://doi.org/10.3390/fishes10050237 - 19 May 2025
Viewed by 1136
Abstract
Tokyo Bay is one of the busiest ocean areas for human activity worldwide, characterized by a high density of maritime traffic and industrial development. This area is also recognized as the habitat of the narrow-ridged finless porpoise, an endangered toothed whale. Although the [...] Read more.
Tokyo Bay is one of the busiest ocean areas for human activity worldwide, characterized by a high density of maritime traffic and industrial development. This area is also recognized as the habitat of the narrow-ridged finless porpoise, an endangered toothed whale. Although the existence of this species has been recognized, its scientific data, such as population size and geographic distribution, are limited in the region. Therefore, using social media, we initiated a research project to collect sighting information on this species in Tokyo Bay. As a result, 27 valid pieces of information on the finless porpoises were collected from July 2024 to the end of February 2025. The sightings were reported mainly in the waters north of Futtsu Cape, indicating that this species is localized in the northern part of Tokyo Bay. Also, most of the reported sightings were of groups of wo or more animals. Notably, a school of at least 30 animals was recorded, marking the most prominent school ever observed in the region and the third largest in Japan. This study highlights the importance of the northern region of Tokyo Bay as a habitat for this species. The effective integration of citizen science with scientific and quantitative research will enhance our understanding of the life history of this endangered species, thereby supporting conservation efforts. Full article
(This article belongs to the Section Biology and Ecology)
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16 pages, 5902 KiB  
Article
Novel Gammaherpesvirus Infections in Narrow-Ridged Finless Porpoise (Neophocaena asiaeorientalis) and False Killer Whales (Pseudorca crassidens) in the Republic of Korea
by Sung Bin Lee, Kyung Lee Lee, Sang Wha Kim, Won Joon Jung, Da Sol Park, Seyoung Lee, Sib Sankar Giri, Sang Guen Kim, Su Jin Jo, Jae Hong Park, Mae Hyun Hwang, Eun Jae Park, Jong-pil Seo, Byung Yeop Kim and Se Chang Park
Viruses 2024, 16(8), 1234; https://doi.org/10.3390/v16081234 - 31 Jul 2024
Viewed by 1584
Abstract
A female narrow-ridged finless porpoise (Neophocaena asiaeorientalis) stranded on a beach on Jeju Island showed epithelial proliferative skin lesions on its body. Two false killer whales (Pseudorca crassidens), caught using nets near Gangneung and Samcheok, respectively, had multiple plaques [...] Read more.
A female narrow-ridged finless porpoise (Neophocaena asiaeorientalis) stranded on a beach on Jeju Island showed epithelial proliferative skin lesions on its body. Two false killer whales (Pseudorca crassidens), caught using nets near Gangneung and Samcheok, respectively, had multiple plaques on their penile epidermis. Histological examination of the epidermis revealed that all the lesions had common features, including accentuated rete pegs, ballooning changes, and eosinophilic intranuclear inclusion (INI) bodies. Based on the histopathological results, herpesvirus infection was suspected, and thus further analysis was conducted using herpesvirus-specific primers. Based on nested polymerase chain reaction (PCR) tests using the herpesvirus-detectable primers, the PCR products demonstrated two fragments: a 222-base-pair (bp) sequence of the DNA polymerase gene, SNUABM_CeHV01, showing 96.4% identity with a bottlenose dolphin herpesvirus from the Jeju narrow-ridged finless porpoise; and a 222 bp sequence of the DNA polymerase gene, SNUABM_CeHV02, showing 95.95% identity with the same bottlenose dolphin herpesvirus from the Gangneung and Samcheok false killer whales. The significance of this study lies in its ability to demonstrate the existence of novel cetacean herpesviruses in South Korean seawater, representing an important step forward in studying potentially harmful pathogens that affect endangered whale and dolphin populations. Full article
(This article belongs to the Special Issue Animal Herpesvirus)
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13 pages, 4798 KiB  
Article
Finless Porpoise Bycatch and Stranding along the Shandong Peninsula, China, Based on Public Reports from 2000 to 2018
by Tao Zuo, Yongtao Li, Zhaolong Cheng, Jun Wang, Jianqiang Sun, Wei Yuan and Mingxiang Niu
Animals 2023, 13(24), 3868; https://doi.org/10.3390/ani13243868 - 15 Dec 2023
Cited by 4 | Viewed by 1724
Abstract
The Shandong Peninsula is located on the western coast of the Pacific and is adjacent to the Bohai Sea (BS) and the Yellow Sea (YS) to the east. The East Asian finless porpoise Neophocaena asiaeorientalis sunameri, a subspecies of the narrow-ridged finless [...] Read more.
The Shandong Peninsula is located on the western coast of the Pacific and is adjacent to the Bohai Sea (BS) and the Yellow Sea (YS) to the east. The East Asian finless porpoise Neophocaena asiaeorientalis sunameri, a subspecies of the narrow-ridged finless porpoise N. asiaeorientalis, is the dominant cetacean resident along the Shandong Peninsula. However, there is insufficient monitoring data to determine the status of the cetacean species in this region. Based on the publicly available literature, media, and internet social website, this study investigated the spatial–temporal distribution of porpoise stranding and bycatch along the coast of the Shandong Peninsula. Data on over five hundred porpoises from two hundred reports between 2000 and 2018 were compiled and analyzed. Results showed that the bycatch and stranding of porpoises occurred widely across the peninsula throughout all months and increased rapidly between 2010 and 2017. The incidents were more frequent in the area where the BS and YS converged during the spring and early summer than in other seasons. The mean body length of bycaught porpoises was smaller than that of those found stranded. Fishing activities could be the principal cause of local finless porpoise incidents. However, limited data hindered a quantitative evaluation of the living conditions of finless porpoises in this area. Establishing a comprehensive monitoring system, which includes standardized reporting, rescue operations, and scientific research, is essential to finless porpoise protection along the Shandong Peninsula. Full article
(This article belongs to the Special Issue Protecting Endangered Species)
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9 pages, 4113 KiB  
Case Report
Adhesive Bowel Obstruction (ABO) in a Stranded Narrow-Ridged Finless Porpoise (Neophocaena asiaeorientalis sunameri)
by Sung Bin Lee, Adams Hei Long Yuen, Young Min Lee, Sang Wha Kim, Sunmin Kim, Cherry Tsz Ching Poon, Won Joon Jung, Sib Sankar Giri, Sang Guen Kim, Su Jin Jo, Jae Hong Park, Mae Hyun Hwang, Jong-pil Seo, Seongjun Choe, Byung Yeop Kim and Se Chang Park
Animals 2023, 13(24), 3767; https://doi.org/10.3390/ani13243767 - 6 Dec 2023
Cited by 2 | Viewed by 2459
Abstract
In this case report, we present a rare occurrence of a narrow-ridged finless porpoise (Neophocaena asiaeorientalis sunameri), discovered on the coast of Jeju Island, Republic of Korea, that was afflicted with adhesive bowel obstruction (ABO), a life-threatening condition that has scarcely [...] Read more.
In this case report, we present a rare occurrence of a narrow-ridged finless porpoise (Neophocaena asiaeorientalis sunameri), discovered on the coast of Jeju Island, Republic of Korea, that was afflicted with adhesive bowel obstruction (ABO), a life-threatening condition that has scarcely been reported in cetaceans. Diagnosis of ABO was confirmed via radiological and clinical assessments. Post-mortem computed tomography and necropsy revealed ABO between two loops of the jejunum at the L8 level. The mesenteric tissue covering the intestinal lesion was severely thickened with increased tension. Both bowel loops were fixed to the mesentery and acutely angulated, leading to asymmetrical thickening of the cross-sectional bowel walls. The intestinal lumen was stenosed because of pressure from the firm mesenteric band, and no fecal matter was observed in the lumen of the posterior bowel or rectum. Calcified nodules were detected, and histological analysis suggested parasitic or suspected post-parasitic infections. The primary cause of the intestinal lesions is presumed to be a reaction related to parasitic infection. However, further investigations would establish a definitive link between parasitic infections and ABO in this species. This case highlights the importance of studying rare medical conditions in wildlife, providing valuable insights into marine mammal health. Full article
(This article belongs to the Special Issue Wildlife Diseases: Pathology and Diagnostic Investigation)
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21 pages, 1690 KiB  
Article
Changing Trends in Cetacean Strandings in the East China Sea: Identifying Relevant Variables and Implications for Conservation and Management
by Shaobo Yang, Shengfa Li, Yan Jin and Zunlei Liu
Diversity 2023, 15(10), 1082; https://doi.org/10.3390/d15101082 - 13 Oct 2023
Cited by 6 | Viewed by 3261
Abstract
The frequency of cetacean strandings is increasing, with multiple causes identified. We examined temporal and spatial trends in stranding numbers along the coastal areas of the East China Sea from 1990 to 2021. Using structural equation models, we analyzed the relationships between strandings [...] Read more.
The frequency of cetacean strandings is increasing, with multiple causes identified. We examined temporal and spatial trends in stranding numbers along the coastal areas of the East China Sea from 1990 to 2021. Using structural equation models, we analyzed the relationships between strandings and climate, oceanic properties, and human activities. Our findings revealed time-dependent interannual variability in strandings but no linear trend, indicating relative stability in cetacean strandings. Seasonal patterns were observed only in narrow-ridged finless porpoises (Neophocaena asiaeorientalis), with significant spring increases (March to May). Clustering of strandings occurred in central Fujian and northern/southern Taiwan, according to spatial analysis. The impact of variables on cetacean strandings varied across time periods. Storm surges, coastal fishing, and the Pacific decadal oscillation were associated with stranding events from 1990 to 2006. However, from 2006 to 2021, the influence of storm surges weakened, while the climate index only indirectly affected strandings through sea surface temperature and salinity, with an increased intensity in the effects of winter sea surface temperature and salinity. Structural equation models unveiled the cascading effects of environmental changes on strandings. This study reports changing trends in cetacean strandings and identifies relevant variables. Although not exhaustive, understanding the reasons behind strandings enhances our comprehension of cetacean responses to environmental changes, supporting targeted conservation and management efforts. Full article
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9 pages, 591 KiB  
Article
Genome Sequence of the Freshwater Yangtze Finless Porpoise
by Yuan Yuan, Peijun Zhang, Kun Wang, Mingzhong Liu, Jing Li, Jinsong Zheng, Ding Wang, Wenjie Xu, Mingli Lin, Lijun Dong, Chenglong Zhu, Qiang Qiu and Songhai Li
Genes 2018, 9(4), 213; https://doi.org/10.3390/genes9040213 - 16 Apr 2018
Cited by 17 | Viewed by 7664
Abstract
The Yangtze finless porpoise (Neophocaena asiaeorientalis ssp. asiaeorientalis) is a subspecies of the narrow-ridged finless porpoise (N. asiaeorientalis). In total, 714.28 gigabases (Gb) of raw reads were generated by whole-genome sequencing of the Yangtze finless porpoise, using an Illumina [...] Read more.
The Yangtze finless porpoise (Neophocaena asiaeorientalis ssp. asiaeorientalis) is a subspecies of the narrow-ridged finless porpoise (N. asiaeorientalis). In total, 714.28 gigabases (Gb) of raw reads were generated by whole-genome sequencing of the Yangtze finless porpoise, using an Illumina HiSeq 2000 platform. After filtering the low-quality and duplicated reads, we assembled a draft genome of 2.22 Gb, with contig N50 and scaffold N50 values of 46.69 kilobases (kb) and 1.71 megabases (Mb), respectively. We identified 887.63 Mb of repetitive sequences and predicted 18,479 protein-coding genes in the assembled genome. The phylogenetic tree showed a relationship between the Yangtze finless porpoise and the Yangtze River dolphin, which diverged approximately 20.84 million years ago. In comparisons with the genomes of 10 other mammals, we detected 44 species-specific gene families, 164 expanded gene families, and 313 positively selected genes in the Yangtze finless porpoise genome. The assembled genome sequence and underlying sequence data are available at the National Center for Biotechnology Information under BioProject accession number PRJNA433603. Full article
(This article belongs to the Special Issue Conservation Genetics and Genomics)
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19 pages, 1770 KiB  
Article
De Novo Assembly and Characterization of Narrow-Ridged Finless Porpoise Renal Transcriptome and Identification of Candidate Genes Involved in Osmoregulation
by Rui Ruan, Ai-Huan Guo, Yu-Jiang Hao, Jin-Song Zheng and Ding Wang
Int. J. Mol. Sci. 2015, 16(1), 2220-2238; https://doi.org/10.3390/ijms16012220 - 20 Jan 2015
Cited by 19 | Viewed by 8446
Abstract
During the evolutionary transition from land to water, cetaceans have undergone numerous critical challenges, with osmoregulation being the major one. Two subspecies of the narrow-ridged finless porpoise (Neophocaena asiaeorientalis), the freshwater Yangtze finless porpoise (N. a. asiaeorientalis, NAA) and [...] Read more.
During the evolutionary transition from land to water, cetaceans have undergone numerous critical challenges, with osmoregulation being the major one. Two subspecies of the narrow-ridged finless porpoise (Neophocaena asiaeorientalis), the freshwater Yangtze finless porpoise (N. a. asiaeorientalis, NAA) and the marine East Asian finless porpoise (N. a. sunameri, NAS), provide excellent subjects to understand the genetic basis of osmoregulatory divergence between freshwater and marine mammals. The kidney plays an important and well-established role in osmoregulation in marine mammals and thus, herein, we utilized RNA-seq to characterize the renal transcriptome and preliminarily analyze the divergence between the NAA and the NAS. Approximately 48.98 million clean reads from NAS and 49.40 million clean reads from NAA were obtained by RNA-Seq. And 73,449 (NAS) and 68,073 (NAA) unigenes were assembled. Among these annotations, 22,231 (NAS) and 21,849 (NAA) unigenes were annotated against the NCBI nr protein database. The ion channel complex GO term and four pathways were detected as relevant to osmoregulation by GO and KEGG pathway classification of these annotated unigenes. Although the endangered status of the study species prevented analysis of biological replicates, we identified nine differentially expressed genes (DEGs) that may be vital in the osmoregulation of the narrow-ridged finless porpoise and worthwhile for future studies. Of these DEGs, the differential expression and distribution of the aquaporin-2 (AQP2) in the collecting duct were verified using immunohistochemical experiments. Together, this work is the first report of renal transcriptome sequencing in cetaceans, and it will provide a valuable resource for future molecular genetics studies on cetacean osmoregulation. Full article
(This article belongs to the Section Biochemistry)
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