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Keywords = stochastic plankton model

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20 pages, 22287 KB  
Article
Deciphering Planktonic Bacterial Community Assembly in the Storage Reservoir of the Long-Distance Water Diversion Project
by Yingying Yang, Liguo Chen, Nianxin Wan, Ailing Xu, Ning Ding and Zhiwen Song
Microorganisms 2025, 13(2), 465; https://doi.org/10.3390/microorganisms13020465 - 19 Feb 2025
Cited by 1 | Viewed by 653
Abstract
Storage reservoirs are crucial components of long-distance water diversion projects, where water diversion may lead to changes in microbial diversity and community structure. Seasonal variations also drive alterations in microbial communities. However, the way that microbes assemble under the combined effects of water [...] Read more.
Storage reservoirs are crucial components of long-distance water diversion projects, where water diversion may lead to changes in microbial diversity and community structure. Seasonal variations also drive alterations in microbial communities. However, the way that microbes assemble under the combined effects of water diversion and seasonal variations in the storage reservoir has not been extensively studied. Jihongtan Reservoir is the terminal storage reservoir of the Yellow River to Qingdao Water Diversion Project (YQWD), which had an average annual water diversion period exceeding 290 days in recent years. In this study, 16S rDNA amplicon sequencing was used to investigate the seasonal dynamics and assembly of planktonic bacterial communities during the water diversion period in Jihongtan Reservoir. The results indicate that planktonic bacteria were able to maintain stable diversity across all four seasons, while the community structure underwent significant seasonal succession. Water temperature (WT) was found to be the primary driving environmental factor influencing the seasonal dynamic of planktonic bacterial communities. Co-occurrence network patterns of planktonic bacterial communities varied across different seasons, particularly in spring and winter. The spring network displayed the most complexity, showcasing the highest connectivity and greater stability. In contrast, the winter network was simpler, exhibiting lower local connectivity but higher global connectivity and lower stability. The analysis of the neutral community model and null model revealed that the relative importance of deterministic and stochastic processes in governing planktonic bacterial community assembly varies seasonally. Stochastic processes (dispersal limitation) are more prominent in spring, summer, and autumn, while deterministic processes (heterogeneous selection) play a greater role in winter. This study is essential for gaining a comprehensive understanding of the effects of water diversion projects and offers valuable references for the assessment of other similar projects. Full article
(This article belongs to the Section Environmental Microbiology)
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18 pages, 3782 KB  
Article
Active Displacement of a Unique Diatom–Ciliate Symbiotic Association
by Yonara Garcia, Felipe M. Neves, Flavio R. Rusch, Leandro T. De La Cruz, Marina E. Wosniack, J. Rudi Strickler, Marcos G. E. da Luz and Rubens M. Lopes
Fluids 2024, 9(12), 283; https://doi.org/10.3390/fluids9120283 - 29 Nov 2024
Cited by 1 | Viewed by 1428
Abstract
Adaptive movement in response to individual interactions represents a fundamental evolutionary solution found by both unicellular organisms and metazoans to avoid predators, search for resources or conspecifics for mating, and engage in other collaborative endeavors. Displacement processes are known to affect interspecific relationships, [...] Read more.
Adaptive movement in response to individual interactions represents a fundamental evolutionary solution found by both unicellular organisms and metazoans to avoid predators, search for resources or conspecifics for mating, and engage in other collaborative endeavors. Displacement processes are known to affect interspecific relationships, especially when linked to foraging strategies. Various displacement phenomena occur in marine plankton, ranging from the large-scale diel vertical migration of zooplankton to microscale interactions around microalgal cells. Among these symbiotic interactions, collaboration between the centric diatom Chaetoceros coarctatus and the peritrich ciliate Vorticella oceanica is widely known and has been recorded in several studies. Here, using 2D and 3D tracking records, we describe the movement patterns of the non-motile, chain-forming diatoms (C. coarctatus) carried by epibiotic ciliates (V. oceanica). The reported data on the Chaetoceros–Vorticella association illustrated the consortium’s ability to generate distinct motility patterns. We established that the currents generated by the attached ciliates, along with the variability in the contraction and relaxation of ciliate stalks in response to food concentration, resulted in three types of trajectories for the consortium. The characteristics of these distinct paths were determined using robust statistical methods, indicating that the different displacement behaviors allowed the consortium to adequately explore distributed resources and remain within the food-rich layers provided in the experimental containers. A simple mechanical–stochastic model was successfully applied to simulate the observed displacement patterns, further supporting the proposed mechanisms of collective response to the environment. Full article
(This article belongs to the Special Issue Biological Fluid Dynamics, 2nd Edition)
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19 pages, 5784 KB  
Article
Benthic Microbes on the Shore of Southern Lake Taihu Exhibit Ecological Significance and Toxin-Producing Potential Through Comparison with Planktonic Microbes
by Qihang Zhao, Bin Wu, Jun Zuo, Peng Xiao, He Zhang, Yaping Dong, Shuai Shang, Guanning Ji, Ruozhen Geng and Renhui Li
Water 2024, 16(21), 3155; https://doi.org/10.3390/w16213155 - 4 Nov 2024
Viewed by 1357
Abstract
Water quality and aquatic ecosystems along lakeshores are vital for ecological balance and human well-being. However, research has primarily focused on plankton, with benthic niches being largely overlooked. To enhance understanding of benthic microbial communities, we utilized 16S and 18S rRNA sequencing alongside [...] Read more.
Water quality and aquatic ecosystems along lakeshores are vital for ecological balance and human well-being. However, research has primarily focused on plankton, with benthic niches being largely overlooked. To enhance understanding of benthic microbial communities, we utilized 16S and 18S rRNA sequencing alongside multivariate statistical methods to analyze samples from the shoreline of Lake Taihu in Huzhou City, Zhejiang Province. Our results reveal a marked difference in species composition between benthic and planktonic microorganisms, with benthic cyanobacteria predominantly comprising filamentous genera like Tychonema, while 95% of planktonic cyanobacteria were Cyanobium. The β-diversity of benthic microorganisms was notably higher than that of planktonic counterparts. The neutral community model indicated that stochastic processes dominated planktonic microbial assembly, while deterministic processes prevailed in benthic communities. Null models showed that homogeneous selection influenced benthic community assembly, whereas planktonic communities were affected by undominated processes and dispersal limitation. Network analysis indicated that planktonic networks were more stable than benthic networks. Importantly, dominant benthic cyanobacterial genera posed potential toxin risks, highlighting the need for enhanced monitoring and ecological risk assessment. Overall, these findings enhance our understanding of benthic and planktonic microbial communities in lakeshores and offer valuable insights for aquatic assessment and management in eutrophicated environments. Full article
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23 pages, 1962 KB  
Article
Effects of Random Environmental Perturbation on the Dynamics of a Nutrient–Phytoplankton–Zooplankton Model with Nutrient Recycling
by Lifan Chen, Xingwang Yu and Sanling Yuan
Mathematics 2022, 10(20), 3783; https://doi.org/10.3390/math10203783 - 13 Oct 2022
Cited by 4 | Viewed by 1917
Abstract
A stochastic nutrient–phytoplankton–zooplankton model with instantaneous nutrient recycling is proposed and analyzed in this paper. When the nutrient uptake function and the grazing function are linear and the ingested phytoplankton is completely absorbed by the zooplankton, we establish two stochastic thresholds [...] Read more.
A stochastic nutrient–phytoplankton–zooplankton model with instantaneous nutrient recycling is proposed and analyzed in this paper. When the nutrient uptake function and the grazing function are linear and the ingested phytoplankton is completely absorbed by the zooplankton, we establish two stochastic thresholds R0S and R1S, which completely determine the persistence and extinction of the plankton. That is, if R0S<1, both the phytoplankton and the zooplankton eventually are eliminated; if R0S>1 and R1S<1, the phytoplankton is persistent in mean but the zooplankton is extinct; while for R1S>1, the entire system is persistent in mean. Furthermore, sufficient criteria for the existence of ergodic stationary distribution of the model are obtained and the persistent levels of the plankton are estimated. Numeric simulations are carried out to illustrate the theoretical results and to conclude our study. Our results suggest that environmental noise may cause the local bloom of phytoplankton, which surprisingly can be used to explain the formation of algal blooms to some extent. Moreover, we find that the nonlinear nutrient uptake function and grazing function may take credit for the periodic succession of blooms regardless of whether they are in the absence or presence of the environmental noises. Full article
(This article belongs to the Special Issue Mathematical Population Dynamics and Epidemiology)
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11 pages, 1654 KB  
Article
Did Maxwell Dream of Electrical Bacteria?
by Eleonora Alfinito, Maura Cesaria and Matteo Beccaria
Biophysica 2022, 2(3), 281-291; https://doi.org/10.3390/biophysica2030026 - 13 Sep 2022
Cited by 4 | Viewed by 1972
Abstract
We propose a model for bacterial Quorum Sensing based on an auxiliary electrostatic-like interaction originating from a fictitious electrical charge that represents bacteria activity. A cooperative mechanism for charge/activity exchange is introduced to implement chemotaxis and replication. The bacteria system is thus represented [...] Read more.
We propose a model for bacterial Quorum Sensing based on an auxiliary electrostatic-like interaction originating from a fictitious electrical charge that represents bacteria activity. A cooperative mechanism for charge/activity exchange is introduced to implement chemotaxis and replication. The bacteria system is thus represented by means of a complex resistor network where link resistances take into account the allowed activity-flow among individuals. By explicit spatial stochastic simulations, we show that the model exhibits different quasi-realistic behaviors from colony formation to biofilm aggregation. The electrical signal associated with Quorum Sensing is analyzed in space and time and provides useful information about the colony dynamics. In particular, we analyze the transition between the planktonic and colony phases as the intensity of Quorum Sensing is varied. Full article
(This article belongs to the Special Issue State-of-the-Art Biophysics in Italy)
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24 pages, 4570 KB  
Article
Dynamics of Oxygen-Plankton Model with Variable Zooplankton Search Rate in Deterministic and Fluctuating Environments
by Sudeshna Mondal, Guruprasad Samanta and Manuel De la Sen
Mathematics 2022, 10(10), 1641; https://doi.org/10.3390/math10101641 - 11 May 2022
Cited by 7 | Viewed by 4380
Abstract
It is estimated by scientists that 50–80% of the oxygen production on the planet comes from the oceans due to the photosynthetic activity of phytoplankton. Some of this production is consumed by both phytoplankton and zooplankton for cellular respiration. In this article, we [...] Read more.
It is estimated by scientists that 50–80% of the oxygen production on the planet comes from the oceans due to the photosynthetic activity of phytoplankton. Some of this production is consumed by both phytoplankton and zooplankton for cellular respiration. In this article, we have analyzed the dynamics of the oxygen-plankton model with a modified Holling type II functional response, based on the premise that zooplankton has a variable search rate, rather than constant, which is ecologically meaningful. The positivity and uniform boundedness of the studied system prove that the model is well-behaved. The feasibility conditions and stability criteria of each equilibrium point are discussed. Next, the occurrence of local bifurcations are exhibited taking each of the vital system parameters as a bifurcation parameter. Numerical simulations are illustrated to verify the analytical outcomes. Our findings show that (i) the system dynamics change abruptly for a low oxygen production rate, resulting in depletion of oxygen and plankton extinction; (ii) the proposed system has oscillatory behavior in an intermediate range of oxygen production rates; (iii) it always has a stable coexistence steady state for a high oxygen production rate, which is dissimilar to the outcome of the model of a coupled oxygen-plankton dynamics where zooplankton consumes phytoplankton with classical Holling type II functional response. Lastly, the effect of environmental stochasticity is studied numerically, corresponding to our proposed system. Full article
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18 pages, 617 KB  
Article
Dynamic Behaviors of a Stochastic Eco-Epidemiological Model for Viral Infection in the Toxin-Producing Phytoplankton and Zooplankton System
by Xiaomei Feng, Yuan Miao, Shulin Sun and Lei Wang
Mathematics 2022, 10(8), 1218; https://doi.org/10.3390/math10081218 - 8 Apr 2022
Cited by 1 | Viewed by 2058
Abstract
It is well known that the evolution of natural populations is almost inevitably disturbed by various environmental factors. Various experiments have shown that the growth of phytoplankton might be affected by nutrient availability, water temperature, and light, while the development of zooplankton is [...] Read more.
It is well known that the evolution of natural populations is almost inevitably disturbed by various environmental factors. Various experiments have shown that the growth of phytoplankton might be affected by nutrient availability, water temperature, and light, while the development of zooplankton is more disturbed by the pH value of the seawater, water temperature, and water movement. However, it is not clear how these environmental fluctuations affect the dynamical behavior of the phytoplankton and zooplankton system. In this paper, a stochastic eco-epidemiological model for viral infection in the toxin-producing phytoplankton and zooplankton system is proposed. Firstly, the existence and uniqueness of globally positive solutions for this model is shown. Secondly, the stochastic boundedness of solutions for the model is proved. Moreover, sufficient conditions for the extinction and persistence in the mean for the phytoplankton and zooplankton are obtained by constructing appropriate stochastic Lyapunov functions and using analytical techniques. Numerical simulations are carried out to demonstrate different dynamical behaviors including coexistence, extinction of the whole plankton system, partial persistence and extinction, and their corresponding probability density curves. Full article
(This article belongs to the Special Issue Difference and Differential Equations and Applications)
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21 pages, 1121 KB  
Article
Global Warming Can Lead to Depletion of Oxygen by Disrupting Phytoplankton Photosynthesis: A Mathematical Modelling Approach
by Yadigar Sekerci and Sergei Petrovskii
Geosciences 2018, 8(6), 201; https://doi.org/10.3390/geosciences8060201 - 3 Jun 2018
Cited by 36 | Viewed by 13462
Abstract
We consider the effect of global warming on the coupled plankton-oxygen dynamics in the ocean. The net oxygen production by phytoplankton is known to depend on the water temperature and hence can be disrupted by warming. We address this issue theoretically by considering [...] Read more.
We consider the effect of global warming on the coupled plankton-oxygen dynamics in the ocean. The net oxygen production by phytoplankton is known to depend on the water temperature and hence can be disrupted by warming. We address this issue theoretically by considering a mathematical model of the plankton-oxygen system. The model is generic and can account for a variety of biological factors. We first show that sustainable oxygen production by phytoplankton is only possible if the net production rate is above a certain critical value. This result appears to be robust to the details of model parametrization. We then show that, once the effect of zooplankton is taken into account (which consume oxygen and feed on phytoplankton), the plankton-oxygen system can only be stable if the net oxygen production rate is within a certain intermediate range (i.e., not too low and not too high). Correspondingly, we conclude that a sufficiently large increase in the water temperature is likely to push the system out of the safe range, which may result in ocean anoxia and even a global oxygen depletion. We then generalize the model by taking into account the effect of environmental stochasticity and show that, paradoxically, the probability of oxygen depletion may decrease with an increase in the rate of global warming. Full article
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