Search Results (65)

Sorghum is an important cereal crop. The maintenance of leaf color significantly influences sorghum growth and development. Although the mechanisms of leaf color mutation have been well studied in many plants, those in sorghum remain largely unclear. Here, we identified a sorghum gradient-pale-green leaf mutant (sbgpgl1) from the ethyl methanesulfonate (EMS) mutagenesis mutant library. Phenotypic, photosynthesis-related parameter, ion content, transcriptome, and metabolome analyses were performed on wild-type BTx623 and the sbgpgl1 mutant at the heading stage, revealing changes in several agronomic traits and physiological indicators. Compared with BTx623, sbgpgl1 showed less height, with a smaller length and width of leaf and panicle. The overall Chl a and Chl b contents in sbgpgl1 were lower than those in BTx623. The net photosynthetic rate, stomatal conductance, and transpiration rate were significantly reduced in sbgpgl1 compared to BTx623. The content of copper (Cu), zinc (Zn), and manganese (Mn) was considerably lower in sbgpgl1 leaves than in BTx623. A total of 4469 differentially expressed genes (DEGs) and 775 differentially accumulated metabolites (DAMs) were identified by RNA-seq and UPLC-MS/MS. The results showed that sbgpgl1 primarily influenced sorghum metabolism by regulating metabolic pathways and the biosynthesis of secondary metabolites, especially flavonoids and phenolic acids, resulting in the gradient-pale-green leaf phenotype. These findings reveal key genes and metabolites involved on a molecular basis in physiological variations of the sorghum leaf color mutant. Full article

Climatic variability, particularly fluctuating precipitation and rising temperatures, poses a significant threat to crop productivity and stability. Forage sorghum hybrids are a promising alternative for fodder and bioenergy due to their high level of drought tolerance. This study evaluated genotypic variation and environmental adaptability of 60 forage sorghum genotypes: 13 parental lines, their 40 crosses and seven commercial hybrids, to identify high-yielding, stable hybrids for biomass production under changing agroecological conditions. Field trials conducted over two contrasting years revealed significant genotype-by-environment interactions (p < 0.05), highlighting the need for multi-year evaluations. While favorable rainfall in 2020 enhanced vegetative traits (plant height, stem diameter, leaf area), biomass yield variability increased, emphasizing that favorable vegetative development does not necessarily correlate with yield stability. Principal component analysis indicated that plant height, stem diameter and leaf-related traits contributed most to genotypic differentiation. However, no single trait emerged as a reliable predictor of yield, suggesting complex trait interaction. These findings underscore the importance of integrative breeding strategies that combine phenotypic trait assessment with environmental adaptability to ensure sustainable biomass production. Sorghum’s drought tolerance and resilience make it a promising crop for future food and feed security in regions prone to climatic stress. Full article

Sorghum (Sorghum bicolor L. Moench) is a versatile cereal crop with diverse applications in human food, animal feed, and other industries. This study investigated the effects of microbial inoculation on sorghum growth and nutrient uptake at two fertilizer levels (100% and 80% of the recommended dose). Bacillus subtilis, B. pumilus, B. licheniformis, Purpureocillium lilacinum, and Trichoderma harzianum were applied to the soil and plants in a greenhouse experiment using a completely randomized design with six replicates per treatment. Plant growth parameters, including height, shoot and root dry matter, nitrogen and phosphorus content in the shoots and roots and chlorophyll, were assessed. The results showed no statistically significant differences among the treatments for most parameters, except for plant height and shoot dry matter, where the B. subtilis treatment exhibited the lowest values. Notably, treatments that received 80% of the recommended fertilizer dose performed similarly to those that received 100%, suggesting the potential for reduced fertilizer usage with microbial inoculants. Although the microbial treatments did not significantly enhance sorghum growth in this study, evaluating their effects remains crucial for developing eco-friendly alternatives to reduce chemical fertilizers. Further research is needed to optimize the application of microbial inoculants and to understand their impact on soil health and agricultural productivity under various environmental conditions. Full article

Sorghum dwarfing genes (Dw1, Dw2, Dw3) are crucial determinants of plant architecture and yield potential; however, their genetic characteristics and distribution patterns in Chinese sorghum landraces remain poorly understood. This study systematically analyzed their allelic distribution across 241 Chinese landrace accessions. Through rigorous PCR-based genotyping and detailed phenotypic characterization, we identified that only approximately 7% of the surveyed landraces carried natural dwarfing alleles, with mutations in the dw3 locus being the most frequently observed. Plant height statistics and genotyping of F2 plants, whose parents were 8R252 (tall accession) and 8R387 (dwarf accession), demonstrated that dw3 exerted the most pronounced effect on plant height reduction. Importantly, we discovered significant epistatic effects in double-recessive combinations, with the dw1dw3 genotype showing particularly strong height reduction. These findings substantially advance our understanding of the genetic architecture underlying sorghum plant height variation and provide a robust scientific foundation for molecular breeding strategies aimed at optimizing lodging resistance and mechanical harvestability in sorghum improvement programs. Full article

Silicon application shows potential for enhancing crop resistance to pests while improving productivity. This study evaluated silicon’s effects on agronomic traits and chemical composition of biomass sorghum (Sorghum bicolor) under aphid infestation (Melanaphis sorghi (Theobald, 1904) (Hemiptera: Aphididae)). Greenhouse-grown sorghum (hybrid BRS716) was treated with silicic acid (0, 2, 4, or 6 metric tons per hectare), applied at sowing and the five-leaf stage. Aphid-infested plants were monitored weekly for damage, alongside growth measurements (height, stem diameter, leaf retention). Post-harvest, fresh, and dry biomass were analyzed via near-infrared spectroscopy and chemical assays. Data were assessed using ANOVA and regression models. Results demonstrated that silicon reduced aphid infestation and damage at 6 metric tons per hectare. Silicon also increased cellulose content and improved phosphorus and calcium uptake, though nitrogen and potassium levels decreased. These findings suggest that silicon supplementation can strengthen sorghum’s natural defenses, enhance biomass production, and modify nutrient profiles. This approach offers a sustainable strategy to mitigate aphid damage while maintaining crop yield and quality, with potential applications in integrated pest management systems. Full article

This study examined the impact of dung beetles on both sorghum growth and the physico-chemical properties of the soil over a two-month period. Four dung beetle species (Onthophagus vacca, Onthophagus marginalis subsp. andalusicus, Euonthophagus crocatus, and Gymnopleurus sturmi) were introduced into experimental setups, consisting of containers filled with sterilised clay-loam soil, with three treatment groups: [cow dung + beetles], [cow dung only], and a control group (no dung nor beetles), in order to evaluate their effects on various growth parameters, including the plant height, biomass, leaf area, and chlorophyll concentration. Additionally, changes in soil properties were assessed, focusing on the organic matter content, pH, conductivity, enzyme activities (e.g., urease, phosphatase), and microbial load. The results revealed significant increases in all the measured parameters across the treatments involving dung beetles, emphasising their role in enhancing soil fertility and plant productivity. The study also highlights the variation in effectiveness among the species, suggesting that beetle diversity plays a crucial role in nutrient cycling. Integrating dung beetles into sustainable farming practices could, therefore, serve as a key strategy to promote resilient agriculture. Full article

Anthracnose and grain mold are two of the most significant diseases of sorghum, a versatile crop that plays an important part in the daily lives of millions of inhabitants, especially in the drier tropical regions. The aim of this study was to determine the influence of four agronomic traits in selected sorghum germplasms on the two diseases using Spearman’s ρ test to identify significant pairwise correlations. Both anthracnose and grain mold scores were significantly and negatively correlated with seed weight and germination rate. The grain mold infection score also demonstrated negative correlations with plant height (Spearman ρ = −0.61 and p-value = <0.0001) and panicle length (Spearman ρ = −0.27 and p-value = 0.0022). In this investigation, principal component analysis and clustering variables analysis revealed that seed weight and germination rate exhibited a directional alignment, suggesting a positive association. Similarly, panicle length and plant height clustered together, suggesting a shared variation pattern. Additionally, a support vector machine and random forest models effectively predicted the germination rate based on the studied traits, highlighting the potential of machine learning in understanding complex trait relationships in sorghum. This work provides insights into the relationship between agronomic traits and disease resistance, thus contributing to sorghum improvement efforts. Full article

Genome-wide association studies (GWAS) are widely used to infer the genetic basis of traits in organisms; however, selecting appropriate thresholds for analysis remains a significant challenge. In this study, we introduce the Sequential SNP Prioritization Algorithm (SSPA) to investigate the genetic underpinnings of two key phenotypes in Sorghum bicolor: maximum canopy height and maximum growth rate. Using a subset of the Sorghum Bioenergy Association Panel cultivated at the Maricopa Agricultural Center in Arizona, we performed GWAS with specific permissive-filtered thresholds to identify genetic markers associated with these traits, enabling the identification of a broader range of explanatory candidate genes. Building on this, our proposed method employed a feature engineering approach leveraging statistical correlation coefficients to unravel patterns between phenotypic similarity and genetic proximity across 274 accessions. This approach helps prioritize Single Nucleotide Polymorphisms (SNPs) that are likely to be associated with the studied phenotype. Additionally, we conducted a complementary analysis to evaluate the impact of SSPA by including all variants (SNPs) as inputs, without applying GWAS. Empirical evidence, including ontology-based gene function, spatial and temporal expression, and similarity to known homologs demonstrates that SSPA effectively prioritizes SNPs and genes influencing the phenotype of interest, providing valuable insights for functional genetics research. Full article

The use of biological methods to control plant diseases has garnered attention due to their eco-friendly and economically viable nature. Trichoderma spp. are the most ubiquitous fungal saprophytes that can often grow as opportunistic symbionts, are eco-friendly, and are not reported to exert any environmental hazard. Soil-borne pathogens can significantly impact the yield of chilli and tomato crops. The study was conducted to explore the impact of various salts (NaCl, MgCl₂, CaCl₂, and KCl) and their concentrations (1%, 5%, 10%, and 15%) on the mycelial growth and sporulation of Trichoderma viride followed by its mass multiplication on diverse organic substrates like wheat seeds, wheat husks, mungbean seeds, maize seeds, rice seeds, pea seeds, sorghum seeds, banana peel, apple peel, pomegranate peel, citrus peel, tomato waste, chilli waste, spinach waste, cabbage waste, potato peel, onion peel, cucumber peel, carrot peel, used black tea leaves, used green tea leaves, poultry waste, and cow and goat dung. The study assessed the biocontrol potential of Trichoderma viride against important soil-borne pathogens in chilli (Pythium aphanidermatum, Phytophthora capsici, and Fusarium oxysporum) and tomato (Pythium aphanidermatum, Phytophthora infestans, and F. oxysporum) cropping in the pot and field experiments using saline and alkaline soils. Seed treatment with T. viride significantly enhanced the germination rates of both chilli and tomato crops, with sorghum being the most conducive substrate for mass-multiplying T. viride. The results revealed that lower salt concentrations minimally affected T. viride growth, while higher concentrations hampered both growth and sporulation. Optimal disease control and plant height were observed at a 20 mg concentration of T. viride, consequently applied in vivo using various application methods, i.e., seed treatment, root dip, irrigation, and mixed treatments (all the methods like seed treatment, root dip method, and irrigation method applied together) to manage soil-borne pathogens. Particularly, T. viride application through irrigation and mixed treatments demonstrated strong efficacy. These findings underscore the potential of T. viride application in saline and alkaline soils to manage soil-borne pathogens like Pythium, Phytophthora spp., and Fusarium spp. This study lays the foundation for the practical application of biocontrol agents, like T. viride, in Pakistani agricultural conditions. Moreover, there is a need for further exploration into the genetic mechanisms involved in disease inhibition and plant growth promotion, along with understanding the impact of T. viride on the metabolic pathways of host plants. Full article

Breeding for dwarfing traits in sorghum is crucial. However, only three genes (Dw1–Dw3) that control plant height have been mapped. In this study, 634 sorghum cultivars were collected to investigate plant height and genotypes. Four were genotyped Dw1DW2Dw3 (wild type) but with different plant heights, and they were selected to construct two populations and map new dwarf genes. Bulked segregant analysis with whole-genome resequencing of the two populations identified the candidate gene in one same genomic region—on chromosome 7. Then, it was narrowed down to a region containing nine genes. Amino acid and DNA sequence analysis of the parent and offspring plants revealed that two novel allelic mutations in the Dw3 gene play a role in reducing the plant height—8R262 or 8R417, including 1 bp substitution and 2 bp deletions. Furthermore, we sequenced 19 cultivars that primarily exhibited a “one-dwarf” hybrid or wild-type and presumed another allelic mutation via the amino acid alignment of 8R019, 8R100, and 8R402, which was another one-base substitution. These results indicate that multiple types of allelic mutations in the Dw3 gene should be considered when identified or applied. Full article

Low doses of glyphosate from application drift can be phytotoxic or stimulate growth of glyphosate-susceptible crops. The application of Si can prevent herbicide-caused plant stress. The effects of Si application (3 mM Si) on low doses (0, 36, 72, and 180 g a.e. ha⁻¹) of glyphosate were determined on Sorghum bicolor in a greenhouse study. Growth parameters, mineral content, metabolite content, and glyphosate and aminomethylphosphonic acid (AMPA) content were measured. Increasing glyphosate content, but no AMPA, was found with increasing glyphosate application rates. Shoot dry weight was increased by 72 g ha⁻¹ of glyphosate when pretreated with Si, and plant height increased in Si-treated plants treated with 72 g ha⁻¹ of glyphosate. Si alone had no effects on growth. Shikimate content was increased by the highest glyphosate rate. Phenylalanine content was generally increased by all glyphosate treatments with or without Si, except for 72 g ha⁻¹ glyphosate without Si. Tyrosine content was increased by 36 and 180 g ha⁻¹ glyphosate without Si. Caffeate content was decreased by Si in the control, and ferulate content was increased with 180 g ha⁻¹ glyphosate in Si-treated plants. Ca levels were reduced by Si at 180 g ha⁻¹ glyphosate. Mn levels were lower than those of the control without Si for all other treatments with Si. The increases in shikimate with the highest glyphosate dose indicated that the herbicide reached its herbicide target and should be causing stress, but the only growth effect was the stimulation of some growth parameters at 72 g ha⁻¹ of glyphosate with Si pretreatment. Similarly, there were increases in some metabolites at some glyphosate concentrations with or without Si. Our results indicate that the rates that we used cause little stress and that Si pretreatment could potentiate glyphosate hormesis for some parameters. Full article

In the enhancement of Novel Sorghum bicolor × S. propinquum Hybrid utilization, optimal planting densities and silage methods remain elusive. This study assesses the effects of planting densities, cellulase (CE), Lactobacillus buchneri (LAB), and their combination (LC) on fermentation quality and bacterial diversity of the hybrid silage. The experiment was carried out in a completely random block design with four additives and five planting densities (M1, M2, M3, M4, M5) as follows (4 additives × 5 planting densities): a control group without additives (CK), a group treated with Lactobacillus buchneri (LAB), a group with cellulase (CE), and a group treated with a combination of LAB and CE (LC), maintaining triplicates per treatment. In this study, the additive treatment improved the fermentation quality of silage compared with the control. In the M2-LC group, the contents of crude protein (CP; 7.88%), ether extract (EE; 1.91%), and ash (7.76%) were the highest, while the pH (3.30) was the lowest. The water-soluble carbohydrate (WSC; 11.28%) content was the highest in the M3-CE group, the lactic acid (LA; 6.79%) content was the highest in the M4-CE group, and the acetic acid (AA; 7.71%) content was the highest in the M2-LAB group. Meanwhile, the neutral washing fiber (NDF; 53.17%) content was the lowest in the M5-CE group, the acid detergent fiber (ADF; 41.01%) content was the lowest in the M2-CE group, and the propionic acid (PA; 0.26%) content was the lowest in the M1-LAB group. Adding LC notably reduced bacterial diversity, boosted Lentilactobacillus, and curbed Proteobacteria. LAB and LC markedly improved amino acid metabolism over CE and CK. Conversely, beta-lactam resistance, flagellar assembly, and ascorbate/aldarate metabolism pathways were suppressed. In the future, we will explore a variety of additives and adjust the cutting height to improve its comprehensive quality, create an innovative path for silage production, promote the efficient use of agricultural resources, and provide high-quality feed for animal husbandry. Full article

Industrial hemp is a continuously expanding crop; however, there has been limited research on its herbicide selectivity and weed control. Pendimethalin, s-metolachlor and aclonifen at 1137.5, 960 and 1800 g a.i. ha⁻¹, respectively, were applied in field experiments in 2022 and 2023 in Greece to study the response of industrial hemp to pre-emergence (PRE) herbicides and record their efficacy on weeds. In 2023, each PRE herbicide was followed by the postemergence application of cycloxydim at 200 g a.i. ha⁻¹ due to infestation of Sorghum halepense. In 2022, retardation in hemp growth was recorded by all PRE herbicide treatments, with there being a slight reduction in stand counts by pendimethalin and s-metolachlor and leaf yellowing by aclonifen in one the experiments. In 2023, no reductions in crop establishment and plant height were recorded, whereas leaf discoloration caused by aclonifen was less evident; cycloxydim did not affect hemp and perfectly controlled S. halepense. Despite the herbicide injury, hemp recovered and succeeded in higher biomass in both experiments at Thessaloniki and in higher seed production in the 2023 Thessaloniki experiment. This study showed that pendimethalin, s-metolachlor and aclonifen can be regarded as potential pre-emergence options with precautions in wet and light soils. Full article

The highly conserved actin depolymerizing factor (ADF) plays an important role in plant growth, development and responses to biotic and abiotic stresses. A total of 72 ADF genes in Arabidopsis, wheat, rice and sorghum can be divided into four groups. The multicollinearity analysis revealed that the maize ADF gene family exhibited more collinearity events with closely related gramineous plants. Fifteen ADF genes in maize were screened from the latest database, and bioinformatics analysis showed that these ADF genes were distributed across seven chromosomes in maize. The gene structure of the ADF gene family in maize exhibits significant conservation and cluster consistency. The promoter region contains rich regulatory elements that are involved in various regulations related to growth, development and adverse stresses. The drought-tolerant ZmADF5 gene in maize was further studied, and it was found that the allelic variations in ZmADF5 were mainly concentrated in its promoter region. A superior haplotype, with drought tolerance, was identified by candidate-gene association analysis of 115 inbred lines. By comparing the phenotypes of anthesis silking interval, grain yield and ear height, it was found that Hap2 performed better than Hap1 under drought stress. This study provides a theoretical reference for understanding the function of the ADF gene family and proposes further investigation into the role of ZmADF5 in abiotic-stress tolerance. Full article

Maintaining or introducing genetic diversity into plant breeding programs is necessary for continual genetic gain; however, diversity at the cost of reduced performance is not something sought by breeders. To this end, backcross-nested association mapping (BC-NAM) populations, in which the recurrent parent is an elite line, can be employed as a strategy to introgress diversity from unadapted accessions while maintaining agronomic performance. This study evaluates (i) the hybrid performance of sorghum lines from 18 BC₁-NAM families and (ii) the potential of genomic prediction to screen lines from BC₁-NAM families for hybrid performance prior to phenotypic evaluation. Despite the diverse geographical origins and agronomic performance of the unadapted parents for BC₁-NAM families, many BC₁-derived lines performed significantly better in the hybrid trials than the elite recurrent parent, R.Tx436. The genomic prediction accuracies for grain yield, plant height, and days to mid-anthesis were acceptable, but the prediction accuracies for plant height were lower than expected. While the prediction accuracies increased when including more individuals in the training set, improvements tended to plateau between two and five lines per family, with larger training sets being required for more complex traits such as grain yield. Therefore, genomic prediction models can be optimized in a large BC₁-NAM population with a relatively low fraction of individuals needing to be evaluated. These results suggest that genomic prediction is an effective method of pre-screening lines within BC₁-NAM families prior to evaluation in extensive hybrid field trials. Full article