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Search Results (724)

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Keywords = self-organizing dynamics

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25 pages, 1520 KB  
Article
Deep Learning-Based Classification of Transformer Inrush and Fault Currents Using a Hybrid Self-Organizing Map and CNN Model
by Heungseok Lee, Sang-Hee Kang and Soon-Ryul Nam
Energies 2025, 18(20), 5351; https://doi.org/10.3390/en18205351 (registering DOI) - 11 Oct 2025
Abstract
Accurate classification between magnetizing inrush currents and internal faults is essential for reliable transformer protection and stable power system operation. Because their transient waveforms are so similar, conventional differential protection and harmonic restraint techniques often fail under dynamic conditions. This study presents a [...] Read more.
Accurate classification between magnetizing inrush currents and internal faults is essential for reliable transformer protection and stable power system operation. Because their transient waveforms are so similar, conventional differential protection and harmonic restraint techniques often fail under dynamic conditions. This study presents a two-stage classification model that combines a self-organizing map (SOM) and a convolutional neural network (CNN) to enhance robustness and accuracy in distinguishing between inrush currents and internal faults in power transformers. In the first stage, an unsupervised SOM identifies topologically structured event clusters without the need for labeled data or predefined thresholds. Seven features are extracted from differential current signals to form fixed-length input vectors. These vectors are projected onto a two-dimensional SOM grid to capture inrush and fault distributions. In the second stage, the SOM’s activation maps are converted to grayscale images and classified by a CNN, thereby merging the interpretability of clustering with the performance of deep learning. Simulation data from a 154 kV MATLAB/Simulink transformer model includes inrush, internal fault, and overlapping events. Results show that after one cycle following fault inception, the proposed method improves accuracy (AC), precision (PR), recall (RC), and F1-score (F1s) by up to 3% compared with a conventional CNN model, demonstrating its suitability for real-time transformer protection. Full article
(This article belongs to the Special Issue Application of Artificial Intelligence in Electrical Power Systems)
24 pages, 6122 KB  
Article
A Minimal CA-Based Model Capturing Evolutionarily Relevant Features of Biological Development
by Miguel Brun-Usan, Javier de Juan García and Roberto Latorre
Mathematics 2025, 13(19), 3238; https://doi.org/10.3390/math13193238 (registering DOI) - 9 Oct 2025
Abstract
Understanding how complex biological forms emerge and evolve remains a central question in evolutionary and developmental biology. To explore this complexity, we introduce a minimal two-dimensional, cellular automaton (CA)-based model that captures key features of biological development—such as spatial growth, self-organization, and differentiation—while [...] Read more.
Understanding how complex biological forms emerge and evolve remains a central question in evolutionary and developmental biology. To explore this complexity, we introduce a minimal two-dimensional, cellular automaton (CA)-based model that captures key features of biological development—such as spatial growth, self-organization, and differentiation—while remaining computationally tractable and evolvable. Unlike most abstract genotype–phenotype mapping models, our approach generates emergent morphological complexity through spatially explicit rule-based interactions governed by a simple genetic vector, resulting in self-organized patterns reminiscent of biological morphogenesis. Using simulations, we show that, as observed in empirical studies, the resulting phenotypic distribution is highly skewed: simple forms are common, while complex ones are rare. The model exhibits a strongly non-linear genotype-to-phenotype mapping in such a way that small genetic changes can lead to disproportionately large morphological shifts. Notably, transitions toward complexity are less frequent than regressions to simplicity, reflecting evolutionary asymmetries observed in natural systems. We further demonstrate that, by allowing for mutations in the generative rules, our model is capable of adaptive evolution and even reproducing generic features of tumoral growth. These findings suggest that even minimal developmental rules can give rise to rich, hierarchical patterns and complex evolutionary dynamics, positioning our CA-based model as a powerful tool for investigating how developmental constraints and biases shape morphological evolution. Full article
(This article belongs to the Special Issue Trends and Prospects of Numerical Modelling in Bioengineering)
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41 pages, 2919 KB  
Review
Organoids as Next-Generation Models for Tumor Heterogeneity, Personalized Therapy, and Cancer Research: Advancements, Applications, and Future Directions
by Ayush Madan, Ramandeep Saini, Nainci Dhiman, Shu-Hui Juan and Mantosh Kumar Satapathy
Organoids 2025, 4(4), 23; https://doi.org/10.3390/organoids4040023 - 8 Oct 2025
Viewed by 221
Abstract
Organoid technology has emerged as a revolutionary tool in cancer research, offering physiologically accurate, three-dimensional models that preserve the histoarchitecture, genetic stability, and phenotypic complexity of primary tumors. These self-organizing structures, derived from adult stem cells, induced pluripotent stem cells, or patient tumor [...] Read more.
Organoid technology has emerged as a revolutionary tool in cancer research, offering physiologically accurate, three-dimensional models that preserve the histoarchitecture, genetic stability, and phenotypic complexity of primary tumors. These self-organizing structures, derived from adult stem cells, induced pluripotent stem cells, or patient tumor biopsies, recapitulate critical aspects of tumor heterogeneity, clonal evolution, and microenvironmental interactions. Organoids serve as powerful systems for modeling tumor progression, assessing drug sensitivity and resistance, and guiding precision oncology strategies. Recent innovations have extended organoid capabilities beyond static culture systems. Integration with microfluidic organoid-on-chip platforms, high-throughput CRISPR-based functional genomics, and AI-driven phenotypic analytics has enhanced mechanistic insight and translational relevance. Co-culture systems incorporating immune, stromal, and endothelial components now permit dynamic modeling of tumor–host interactions, immunotherapeutic responses, and metastatic behavior. Comparative analyses with conventional platforms, 2D monolayers, spheroids, and patient-derived xenografts emphasize the superior fidelity and clinical potential of organoids. Despite these advances, several challenges remain, such as protocol variability, incomplete recapitulation of systemic physiology, and limitations in scalability, standardization, and regulatory alignment. Addressing these gaps with unified workflows, synthetic matrices, vascularized and innervated co-cultures, and GMP-compliant manufacturing will be crucial for clinical integration. Proactive engagement with regulatory frameworks and ethical guidelines will be pivotal to ensuring safe, responsible, and equitable clinical translation. With the convergence of bioengineering, multi-omics, and computational modeling, organoids are poised to become indispensable tools in next-generation oncology, driving mechanistic discovery, predictive diagnostics, and personalized therapy optimization. Full article
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12 pages, 212 KB  
Entry
Sensing, Feeling, and Origins of Cognition
by Gordana Dodig-Crnkovic
Encyclopedia 2025, 5(4), 160; https://doi.org/10.3390/encyclopedia5040160 - 8 Oct 2025
Viewed by 90
Definition
Cognition is often modeled in terms of abstract reasoning and neural computation, yet a growing body of theoretical and experimental work suggests that the roots of cognition lie in fundamental embodied regulatory processes. This article presents a theory of cognition grounded in sensing, [...] Read more.
Cognition is often modeled in terms of abstract reasoning and neural computation, yet a growing body of theoretical and experimental work suggests that the roots of cognition lie in fundamental embodied regulatory processes. This article presents a theory of cognition grounded in sensing, feeling, and affect—capacities that precede neural systems and are observable in even the simplest living organisms. Based on the info-computational framework, this entry outlines how cognition and proto-subjectivity co-emerge in biological systems. Embodied appraisal—the system’s ability to evaluate internal and external conditions in terms of valence (positive/negative; good/bad)—and the capacity to regulate accordingly are described as mutually constitutive processes observable at the cellular level. This concept reframes cognition not as abstract symbolic reasoning but as value-sensitive, embodied information dynamics resulting from self-regulating engagement with the environment that spans scales from unicellular organisms to complex animals. In this context, information is physically instantiated, and computation is the dynamic, self-modifying process by which organisms regulate and organize themselves. Cognition thus emerges from the dynamic coupling of sensing, internal evaluation, and adaptive morphological (material shape-based) activity. Grounded in findings from developmental biology, bioelectric signaling, morphological computation, and basal cognition, this account situates intelligence as an affect-driven regulatory capacity intrinsic to biological life. While focused on biological systems, this framework also offers conceptual insights for developing more adaptive and embodied forms of artificial intelligence. Future experiments with minimal living systems or synthetic agents may help operationalize and test the proposed mechanisms of proto-subjectivity and affect regulation. Full article
(This article belongs to the Section Biology & Life Sciences)
17 pages, 4866 KB  
Article
Development of Virtual Disk Method for Propeller Interacting with Free Surface
by Sua Jeong, Hwi-Su Kim, Yoon-Ho Jang, Byeong-U You and Kwang-Jun Paik
J. Mar. Sci. Eng. 2025, 13(10), 1912; https://doi.org/10.3390/jmse13101912 - 5 Oct 2025
Viewed by 126
Abstract
As the environmental regulations of the International Maritime Organization (IMO) become more stringent, the accurate prediction of ship propulsion performance has become essential. Under ballast conditions where the draft is shallow, the propeller approaches the free surface, causing complex phenomena such as ventilation [...] Read more.
As the environmental regulations of the International Maritime Organization (IMO) become more stringent, the accurate prediction of ship propulsion performance has become essential. Under ballast conditions where the draft is shallow, the propeller approaches the free surface, causing complex phenomena such as ventilation and surface piercing, which reduce propulsion efficiency. The conventional virtual disk (VD) method cannot adequately capture these free-surface effects, leading to deviations from model propeller results. To resolve this, a correction formula that accounts for the advance ratio (J) and submergence ratio (h/D) has been proposed in previous studies. In this study, the correction formula was simplified and implemented in a CFD environment using a field function, enabling dynamic adjustment of body force based on time-varying submergence depth. A comparative analysis was conducted between the conventional VD, modified VD, and model propeller using POW and self-propulsion simulations for an MR tanker and SP598M propeller. The improved method was validated in calm and regular wave conditions. The results showed that the modified VD method closely matched the performance trends of the model propeller, especially in free surface-interference conditions (e.g., h/D < 0.5). Furthermore, additional validations in wave-induced self-propulsion confirmed that the modified VD method accurately reproduced the reductions in wake fraction and thrust deduction coefficient, unlike the overestimations observed with the conventional VD. These results demonstrate that the modified VD method can reliably predict propulsion performance under real sea states and serve as a practical tool in the early design stage. Full article
(This article belongs to the Section Ocean Engineering)
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22 pages, 32792 KB  
Article
MRV-YOLO: A Multi-Channel Remote Sensing Object Detection Method for Identifying Reclaimed Vegetation in Hilly and Mountainous Mining Areas
by Xingmei Li, Hengkai Li, Jingjing Dai, Kunming Liu, Guanshi Wang, Shengdong Nie and Zhiyu Zhang
Forests 2025, 16(10), 1536; https://doi.org/10.3390/f16101536 - 2 Oct 2025
Viewed by 225
Abstract
Leaching mining of ion-adsorption rare earths degrades soil organic matter and hampers vegetation recovery. High-resolution UAV remote sensing enables large-scale monitoring of reclamation, yet vegetation detection accuracy is constrained by key challenges. Conventional three-channel detection struggles with terrain complexity, illumination variation, and shadow [...] Read more.
Leaching mining of ion-adsorption rare earths degrades soil organic matter and hampers vegetation recovery. High-resolution UAV remote sensing enables large-scale monitoring of reclamation, yet vegetation detection accuracy is constrained by key challenges. Conventional three-channel detection struggles with terrain complexity, illumination variation, and shadow effects. Fixed UAV altitude and missing topographic data further cause resolution inconsistencies, posing major challenges for accurate vegetation detection in reclaimed land. To enhance multi-spectral vegetation detection, the model input is expanded from the traditional three channels to six channels, enabling full utilization of multi-spectral information. Furthermore, the Channel Attention and Global Pooling SPPF (CAGP-SPPF) module is introduced for multi-scale feature extraction, integrating global pooling and channel attention to capture multi-channel semantic information. In addition, the C2f_DynamicConv module replaces conventional convolutions in the neck network to strengthen high-dimensional feature transmission and reduce information loss, thereby improving detection accuracy. On the self-constructed reclaimed vegetation dataset, MRV-YOLO outperformed YOLOv8, with mAP@0.5 and mAP@0.5:0.95 increasing by 4.6% and 10.8%, respectively. Compared with RT-DETR, YOLOv3, YOLOv5, YOLOv6, YOLOv7, yolov7-tiny, YOLOv8-AS, YOLOv10, and YOLOv11, mAP@0.5 improved by 6.8%, 9.7%, 5.3%, 6.5%, 6.4%, 8.9%, 4.6%, 2.1%, and 5.4%, respectively. The results demonstrate that multichannel inputs incorporating near-infrared and dual red-edge bands significantly enhance detection accuracy for reclaimed vegetation in rare earth mining areas, providing technical support for ecological restoration monitoring. Full article
(This article belongs to the Section Forest Inventory, Modeling and Remote Sensing)
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18 pages, 382 KB  
Article
Self-Organized Criticality and Quantum Coherence in Tubulin Networks Under the Orch-OR Theory
by José Luis Díaz Palencia
AppliedMath 2025, 5(4), 132; https://doi.org/10.3390/appliedmath5040132 - 2 Oct 2025
Viewed by 240
Abstract
We present a theoretical model to explain how tubulin dimers in neuronal microtubules might achieve collective quantum coherence, resulting in wavefunction collapses that manifest as avalanches within a self-organized criticality (SOC) framework. Using the Orchestrated Objective Reduction (Orch-OR) theory as inspiration, we propose [...] Read more.
We present a theoretical model to explain how tubulin dimers in neuronal microtubules might achieve collective quantum coherence, resulting in wavefunction collapses that manifest as avalanches within a self-organized criticality (SOC) framework. Using the Orchestrated Objective Reduction (Orch-OR) theory as inspiration, we propose that microtubule subunits (tubulins) become transiently entangled via dipole–dipole couplings, forming coherent domains susceptible to sudden self-collapse. We model a network of tubulin-like nodes with scale-free (Barabási–Albert) connectivity, each evolving via local coupling and stochastic noise. Near criticality, the system exhibits power-law avalanches—abrupt collective state changes that we identify with instantaneous quantum wavefunction collapse events. Using the Diósi–Penrose gravitational self-energy formula, we estimate objective reduction times TOR=/Eg for these events in the 10–200 ms range, consistent with the Orch-OR conscious moment timescale. Our results demonstrate that quantum coherence at the tubulin level can be amplified by scale-free critical dynamics, providing a possible bridge between sub-neuronal quantum processes and large-scale neural activity. Full article
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12 pages, 259 KB  
Review
Thermal Ecology and Forensic Implications of Blow Fly (Family: Calliphoridae) Maggot Mass Dynamics: A Review
by Akomavo Fabrice Gbenonsi and Leon Higley
Insects 2025, 16(10), 1018; https://doi.org/10.3390/insects16101018 - 1 Oct 2025
Viewed by 528
Abstract
Blow flies (Diptera: Calliphoridae) play a crucial role in the decomposition process and serve as important forensic indicators due to their predictable colonization patterns. This review focuses on the dynamics of maggot masses, highlighting their ecological roles, thermoregulation, and implications for forensics. We [...] Read more.
Blow flies (Diptera: Calliphoridae) play a crucial role in the decomposition process and serve as important forensic indicators due to their predictable colonization patterns. This review focuses on the dynamics of maggot masses, highlighting their ecological roles, thermoregulation, and implications for forensics. We summarize data on the self-organizing behavior of maggot masses, which is influenced by chemical cues and environmental factors. These masses can generate internal temperatures that exceed ambient levels by 10–20 °C, accelerating larval growth and impacting competition among individuals. This localized heating complicates the estimation of the postmortem interval (PMI), as traditional models may not take these thermal influences into account. Furthermore, maggot masses contribute significantly to nutrient cycling and soil enrichment, while the behavior of the larvae includes both cooperation and competition, which is influenced by the species composition present. This review highlights challenges in PMI estimation due to heat production but also discusses advancements in molecular tools and thermal modeling that enhance accuracy. Ultimately, we identify knowledge gaps regarding species diversity, microbial interactions, and environmental variability that impact mass dynamics, suggesting future research avenues that could enhance ecological understanding and forensic applications. Full article
(This article belongs to the Section Role of Insects in Human Society)
40 pages, 4927 KB  
Article
Enhancing Rural Energy Resilience Through Combined Agrivoltaic and Bioenergy Systems: A Case Study of a Real Small-Scale Farm in Southern Italy
by Michela Costa and Stefano Barba
Energies 2025, 18(19), 5139; https://doi.org/10.3390/en18195139 - 27 Sep 2025
Viewed by 341
Abstract
Agrivoltaics (APV) mitigates land-use competition between photovoltaic installations and agricultural activities, thereby supporting multifaceted policy objectives in energy transition and sustainability. The availability of organic residuals from agrifood practices may also open the way to their energy valorization. This paper examines a small-scale [...] Read more.
Agrivoltaics (APV) mitigates land-use competition between photovoltaic installations and agricultural activities, thereby supporting multifaceted policy objectives in energy transition and sustainability. The availability of organic residuals from agrifood practices may also open the way to their energy valorization. This paper examines a small-scale farm in the Basilicata Region, southern Italy, to investigate the potential installation of an APV plant or a combined APV and bioenergy system to meet the electrical needs of the existing processing machinery. A dynamic numerical analysis is performed over an annual cycle to properly size the storage system under three distinct APV configurations. The panel shadowing effects on the underlying crops are quantified by evaluating the reduction in incident solar irradiance during daylight and the consequent agricultural yield differentials over the life period of each crop. The integration of APV and a biomass-powered cogenerator is then considered to explore the possible off-grid farm operation. In the sole APV case, the single-axis tracking configuration achieves the highest performance, with 45.83% self-consumption, a land equivalent ratio (LER) of 1.7, and a payback period of 2.77 years. For APV and bioenergy, integration with a 20 kW cogeneration unit achieves over 99% grid independence by utilizing a 97.57 kWh storage system. The CO2 emission reduction is 49.6% for APV alone and 100% with biomass integration. Full article
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21 pages, 488 KB  
Review
Entangled Autopoiesis: Reframing Psychotherapy and Neuroscience Through Cognitive Science and Systems Engineering
by Dana Rad, Monica Maier, Zorica Triff and Radiana Marcu
Brain Sci. 2025, 15(10), 1032; https://doi.org/10.3390/brainsci15101032 - 24 Sep 2025
Viewed by 1251
Abstract
The increasing intersection of psychotherapy, cognitive science, neuroscience, and systems engineering beckons us to rethink what it means to talk the language of the human mind in the clinical setting. This position paper proposes the idea of entangled autopoiesis, a metatheoretical paradigm that [...] Read more.
The increasing intersection of psychotherapy, cognitive science, neuroscience, and systems engineering beckons us to rethink what it means to talk the language of the human mind in the clinical setting. This position paper proposes the idea of entangled autopoiesis, a metatheoretical paradigm that addresses the mind and therapy not as linear processes but as self-organizing, adaptive processes enfolded across neural, cognitive, relational, and cultural domains. Psychotherapy, from this viewpoint, is less a corrective technique and more a zone of systemic integration, wherein resilience and meaning are co-created in the interaction of embodied brains, lived stories, and relational fields. Neuroscience informs us about plasticity and regulation; cognitive science emphasizes the embodied and extended nature of cognition; and systems engineering sheds light on feedback, emergence, and adaptive dynamics. Artificial intelligence appears as a double presence: as a metaphor for complexity and as a practical tool able to chart patterns below human sensibility. By adopting a complexity-aware epistemology, we advocate a relocation in clinical thinking—one recognizing the psyche as an autopoietic network, entangled with culture and technology and able to renew itself in therapeutic encounters. The implications for clinical methodology, therapist training, and future interdisciplinary research are discussed. Full article
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19 pages, 4945 KB  
Article
Covalent Organic Framework-Based Nanomembrane with Co-Immobilized Dual Enzymes for Micropollutant Removal
by Junda Zhao, Guanhua Liu, Xiaobing Zheng, Liya Zhou, Li Ma, Ying He, Xiaoyang Yue and Yanjun Jiang
Nanomaterials 2025, 15(18), 1431; https://doi.org/10.3390/nano15181431 - 18 Sep 2025
Viewed by 338
Abstract
Biocatalytic nanomembranes have emerged as promising platforms for micropollutant remediation, yet their practical application is hindered by limitations in removal efficiency and operational stability. This study presents an innovative approach for fabricating highly stable and efficient biocatalytic nanomembranes through the co-immobilization of horseradish [...] Read more.
Biocatalytic nanomembranes have emerged as promising platforms for micropollutant remediation, yet their practical application is hindered by limitations in removal efficiency and operational stability. This study presents an innovative approach for fabricating highly stable and efficient biocatalytic nanomembranes through the co-immobilization of horseradish peroxidase (HRP) and glucose oxidase (GOx) within a covalent organic framework (COF) nanocrystal. Capitalizing on the dynamic covalent chemistry of COFs during their self-healing and self-crystallization processes, we achieved simultaneous enzyme immobilization and framework formation. This unique confinement strategy preserved enzymatic activity while significantly enhancing stability. HRP/GOx@COF biocatalytic membrane was prepared through the loading of immobilized enzymes (HRP/GOx@COF) onto a macroporous polymeric substrate membrane pre-coated with a polydopamine (PDA) adhesive layer. At HRP and GOx dosages of 4 mg and 4.5 mg, respectively, and a glucose concentration of 5 mM, the removal rate of bisphenol A (BPA) reached 99% through the combined functions of catalysis, adsorption, and rejection. The BPA removal rate of the biocatalytic membrane remained high under both acidic and alkaline conditions. Additionally, the removal rate of dyes with different properties exceeded 88%. The removal efficiencies of doxycycline hydrochloride, 2,4-dichlorophenol, and 8-hydroxyquinoline surpassed 95%. In this study, the enzyme was confined in the ordered and stable COF, which endowed the biocatalytic membrane with good stability and reusability over multiple batch cycles. Full article
(This article belongs to the Section Environmental Nanoscience and Nanotechnology)
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18 pages, 3602 KB  
Article
Information Dynamics of the Mother–Fetus System Using Kolmogorov–Sinai Entropy Derived from Heart Sounds: A Longitudinal Study from Early Pregnancy to Postpartum
by Sayuri Ishiyama, Takashi Tahara, Hiroaki Iwanaga and Kazutomo Ohashi
Entropy 2025, 27(9), 969; https://doi.org/10.3390/e27090969 - 17 Sep 2025
Viewed by 368
Abstract
Kolmogorov–Sinai (KS) entropy is an indicator of the chaotic behavior of entire systems from an information-theoretic viewpoint. Here, we used KS entropy values derived from the heart sounds of four fetus–mother pairs to identify the changes in fetal and maternal informational patterns during [...] Read more.
Kolmogorov–Sinai (KS) entropy is an indicator of the chaotic behavior of entire systems from an information-theoretic viewpoint. Here, we used KS entropy values derived from the heart sounds of four fetus–mother pairs to identify the changes in fetal and maternal informational patterns during the four phases of pregnancy (early, mid, late, and postnatal). Time-series data of the heart sounds were reconstructed in a five-dimensional phase space to obtain the Lyapunov spectrum, and KS entropy was calculated. Statistical analyses were then conducted separately for the fetus and mother for the four phases of pregnancy. The fetal KS entropy significantly increased from early pregnancy to the postnatal period (0.054 ± 0.007 vs. 0.097 ± 0.007; p < 0.001), whereas the maternal KS entropy decreased in late pregnancy and then significantly increased after birth (0.098 ± 0.002 vs. 0.133 ± 0.003; p < 0.001). The increase in KS entropy with the course of fetal gestation reflects an increase in information generation and adaptive capacity during the developmental process. Thus, changes in maternal KS entropy play a dual role, temporarily enhancing physiological stability to support fetal development and helping to rebuild the mother’s own adaptive capacity in the postpartum period. Full article
(This article belongs to the Special Issue Synchronization and Information Patterns in Human Dynamics)
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30 pages, 14149 KB  
Article
Heterogeneous Group Adaptive Defense Model Based on Symmetry-Breaking and Skin Effect
by Yunzhuo Ma, Peng Yu, Meijuan Li and Xue-Bo Chen
Symmetry 2025, 17(9), 1555; https://doi.org/10.3390/sym17091555 - 17 Sep 2025
Viewed by 325
Abstract
Collective intelligence systems have demonstrated considerable potential in dynamic adversarial environments due to their distributed, self-organizing, and highly robust characteristics. The crux of an efficacious defense lies in establishing a dynamically adjustable, non-uniform defense structure through the differentiation of internal member roles. The [...] Read more.
Collective intelligence systems have demonstrated considerable potential in dynamic adversarial environments due to their distributed, self-organizing, and highly robust characteristics. The crux of an efficacious defense lies in establishing a dynamically adjustable, non-uniform defense structure through the differentiation of internal member roles. The proposed model is a heterogeneous-swarm adaptive-defense model based on symmetry breaking and skin effect. The model draws from symmetry theory, incorporating the skin effect of conductor currents and the hierarchical structural characteristics of biological groups, such as starlings. The construction of a radially symmetric dynamic hierarchical swarm structure is achieved by assigning different types of individuals with distinct safety radius preferences. Secondly, the principle of symmetry breaking is employed to establish a phase transition mechanism from radial symmetry to directed defense, thereby achieving an adaptive barrier formation algorithm. This algorithm enables the defensive group to assess threat characteristics and dynamically adjust defense resource deployment. The simulation results obtained from this study validate the phase transition process from continuous rotational symmetry to directed defense. This process demonstrates the barrier formation mechanism and ensures the safety and integrity of the core units within the group. Full article
(This article belongs to the Section Computer)
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14 pages, 8396 KB  
Article
Post-Fire Natural Regeneration and Soil Response in Aleppo Pine Forests in a Mediterranean Environment
by Pasquale A. Marziliano, Silvio Bagnato, Elisabetta Emo and Michele Mercuri
Sustainability 2025, 17(18), 8309; https://doi.org/10.3390/su17188309 - 16 Sep 2025
Viewed by 397
Abstract
Wildfires are a major ecological disturbance in Mediterranean forests, whose frequency and intensity are increasingly driven by climate change and land-use dynamics. This study investigated post-fire natural regeneration and soil properties in Aleppo pine stands seven years after a high-severity crown fire in [...] Read more.
Wildfires are a major ecological disturbance in Mediterranean forests, whose frequency and intensity are increasingly driven by climate change and land-use dynamics. This study investigated post-fire natural regeneration and soil properties in Aleppo pine stands seven years after a high-severity crown fire in southern Italy. Two stand types—pure pine and mixed pine—were compared, differing in fire severity and structural composition. We evaluated seedling density and dendrometric parameters (height and collar diameter), as well as soil parameters (pH, organic matter, and bulk density) to assess their role in post-fire recovery. Regeneration was abundant and composed exclusively of Aleppo pine, with significantly higher seedling density in the pure pine stand, where fire severity was greatest. In mixed pine stand, moderate fire severity combined with interspecific competition limited regeneration density. Deadwood presence enhanced microclimatic conditions favorable to seedling establishment, supporting a post-fire recovery dynamic consistent with self-succession, whereby pre-fire dominant species are favored. Soil analyses revealed higher organic matter content and lower bulk density in the pure stand, which likely facilitated regeneration. Overall, these findings underscore the ecological value of deadwood retention and passive management strategies in fostering spontaneous forest recovery. A better understanding of post-fire regeneration patterns and soil conditions can inform adaptive management approaches to strengthen forest resilience in Mediterranean forests under increasing climate pressure. Full article
(This article belongs to the Section Sustainable Forestry)
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46 pages, 4099 KB  
Review
Hypoxia and Multilineage Communication in 3D Organoids for Human Disease Modeling
by Seif Ehab, Ola A. Gaser and Ahmed Abdal Dayem
Biomimetics 2025, 10(9), 624; https://doi.org/10.3390/biomimetics10090624 - 16 Sep 2025
Viewed by 1073
Abstract
Organoids, self-organizing, three-dimensional (3D) multicellular structures derived from tissues or stem cells, offer physiologically relevant models for studying human development and disease. Compared to conventional two-dimensional (2D) cell cultures and animal models, organoids more accurately recapitulate the architecture and function of human organs. [...] Read more.
Organoids, self-organizing, three-dimensional (3D) multicellular structures derived from tissues or stem cells, offer physiologically relevant models for studying human development and disease. Compared to conventional two-dimensional (2D) cell cultures and animal models, organoids more accurately recapitulate the architecture and function of human organs. Among the critical microenvironmental cues influencing organoid behavior, hypoxia and multilineage communication are particularly important for guiding cell fate, tissue organization, and pathological modeling. Hypoxia, primarily regulated by hypoxia-inducible factors (HIFs), modulates cellular proliferation, differentiation, metabolism, and gene expression, making it a key component in disease modeling. Similarly, multilineage communication, facilitated by intercellular interactions and extracellular matrix (ECM) remodeling, enhances organoid complexity and immunological relevance. This review explores the dynamic interplay between hypoxia and multilineage signaling in 3D organoid-based disease models, emphasizing recent advances in engineering hypoxic niches and co-culture systems to improve preclinical research fidelity. We also discuss their translational implications for drug screening, regenerative medicine, and precision therapies, while highlighting current challenges and future opportunities. By integrating biophysical, biochemical, and computational approaches, next-generation organoid models may be further optimized for translational research and therapeutic innovation. Full article
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