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23 pages, 8553 KB  
Article
Tripeptides Featuring Dehydrophenylalanine and Homophenylalanine: Homo- Versus Hetero-Chirality and Sequence Effects on Self-Assembly and Gelation
by André F. Carvalho, Teresa Pereira, Carlos Oliveira, Pedro Figueiredo, Alexandra Carvalho, David M. Pereira, Loic Hilliou, Manuel Bañobre-López, Bing Xu, Paula M. T. Ferreira and José A. Martins
Gels 2025, 11(3), 164; https://doi.org/10.3390/gels11030164 - 24 Feb 2025
Cited by 1 | Viewed by 1491
Abstract
Over the years, our research group developed dehydrodipeptides N-capped with aromatic moieties as protease-resistant efficacious hydrogelators, affording self-assembled hydrogels at low (critical) concentrations. Dehydrotripeptides, with different dipeptide sequences and (D,L) stereochemistry, open a wider chemical space for the [...] Read more.
Over the years, our research group developed dehydrodipeptides N-capped with aromatic moieties as protease-resistant efficacious hydrogelators, affording self-assembled hydrogels at low (critical) concentrations. Dehydrotripeptides, with different dipeptide sequences and (D,L) stereochemistry, open a wider chemical space for the development of self-assembled soft nanomaterials. In this work, a small library of N-succinylated dehydrotripeptides containing a C-terminal dehydrophenylalanine (∆Phe) residue and a scrambled dipeptide sequence with phenylalanine (Phe) and homophenylalanine (Hph) (L-Phe-L,D-Hph and L,D-Hph-L-Phe) was synthesized and characterized as a potential hydrogelator. Two pairs of diastereomeric tripeptides were synthesized, both as C-protected methyl esters and as deprotected dicarboxylic acids. Peptides with the sequence Hph-Phe-ΔPhe were obtained as a pair (D,L,Z)/(L,L,Z) of diastereomers. Their scrambled sequence analogues Phe-Hph-ΔPhe were obtained also as a diastereomeric (L,D,Z)/(L,L,Z) pair. The effect of stereochemistry (homo- vs. hetero-chirality) and sequence (Phe-∆Phe vs. Hph-∆Phe motif) on the self-assembly, biocompatibility, gelation and rheological properties of the hydrogels was studied in this work. Accessible, both as C-protected methyl esters and as dicarboxylic acids, N-succinylated dehydrotripeptides are interesting molecular architectures for the development of supramolecular nanomaterials. Interestingly, our results do not comply with the well-documented proposition that heterochiral peptides display much higher self-assembly propensity and gelation ability than their homochiral counterparts. Further studies will be necessary to fully understand the interplay between peptide sequence and homo- and hetero-chirality on peptide self-assembly and on the properties of their supramolecular materials. Full article
(This article belongs to the Special Issue Design of Supramolecular Hydrogels)
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11 pages, 252 KB  
Article
Furstenberg Family and Chaos for Time-Varying Discrete Dynamical Systems
by Risong Li, Yongjiang Li, Tianxiu Lu, Jiazheng Zhao and Jing Su
Entropy 2024, 26(8), 674; https://doi.org/10.3390/e26080674 - 9 Aug 2024
Viewed by 1050
Abstract
Assume that (Y,ρ) is a nontrivial complete metric space, and that (Y,g1,) is a time-varying discrete dynamical system (T-VDDS), which is given by sequences (gl)l=1 [...] Read more.
Assume that (Y,ρ) is a nontrivial complete metric space, and that (Y,g1,) is a time-varying discrete dynamical system (T-VDDS), which is given by sequences (gl)l=1 of continuous selfmaps gl:YY. In this paper, for a given Furstenberg family G and a given T-VDDS (Y,g1,), G-scrambled pairs of points of the system (Y,g1,) (which contains the well-known scrambled pairs) are provided. Some properties of the set of G-scrambled pairs of a given T-VDDS (Y,g1,) are studied. Moreover, the generically G-chaotic T-VDDS and the generically strongly G-chaotic T-VDDS are defined. A sufficient condition for a given T-VDDS to be generically strongly G-chaotic is also presented. Full article
(This article belongs to the Section Complexity)
13 pages, 716 KB  
Article
Lightweight Strong PUF for Resource-Constrained Devices
by Mateusz Korona, Radosław Giermakowski, Mateusz Biernacki and Mariusz Rawski
Electronics 2024, 13(2), 351; https://doi.org/10.3390/electronics13020351 - 14 Jan 2024
Cited by 5 | Viewed by 2336
Abstract
Physical Unclonable Functions are security primitives that exploit the variation in integrated circuits’ manufacturing process, and, as a result, each instance processes applied stimuli differently. This feature can be used to provide a unique fingerprint of the electronic device, or as an interesting [...] Read more.
Physical Unclonable Functions are security primitives that exploit the variation in integrated circuits’ manufacturing process, and, as a result, each instance processes applied stimuli differently. This feature can be used to provide a unique fingerprint of the electronic device, or as an interesting alternative to classic key storage methods. Due to their nature, they are often considered an element of the Internet of Things nodes. However, their application heavily depends on resource consumption. Lightweight architectures are proposed in the literature but are technology-dependent or still introduce significant hardware overhead. This paper presents a lightweight, Strong PUF based on ring oscillator architecture, which offers small hardware overhead and sufficient security levels for resource-constrained Internet of Things devices. The PUF design utilizes a Linear Feedback Shift Register-based scramble module to generate many challenge–response pairs from a small number of ring oscillators and a control module to manage the response generation process. The proposed PUF can be used as a Weak PUF for key generation or a Strong PUF for device authentication. Full article
(This article belongs to the Section Computer Science & Engineering)
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15 pages, 4937 KB  
Article
Spontaneous Water-Promoted Self-Aggregation of a Hydrophilic Gold(I) Complex Due to Ligand Sphere Rearrangement
by Ainhoa Rodríguez-Gobernado, Daniel Blasco, Miguel Monge and José M. López-de-Luzuriaga
Molecules 2023, 28(15), 5680; https://doi.org/10.3390/molecules28155680 - 27 Jul 2023
Cited by 1 | Viewed by 1444
Abstract
Aggregating gold(I) complexes in solution through short aurophilic contacts promotes new photoluminescent deactivation pathways (aggregation-induced emission, AIE). The time dependence of spontaneous AIE is seldom studied. We examine the behavior of complex [Au(N9-hypoxanthinate)(PTA)] (1) in an aqueous solution [...] Read more.
Aggregating gold(I) complexes in solution through short aurophilic contacts promotes new photoluminescent deactivation pathways (aggregation-induced emission, AIE). The time dependence of spontaneous AIE is seldom studied. We examine the behavior of complex [Au(N9-hypoxanthinate)(PTA)] (1) in an aqueous solution with the aid of variable-temperature NMR, time-resolved UV–Vis and photoluminescence spectroscopy, and PGSE NMR. The studies suggest that partial ligand scrambling in favor of the ionic [Au(PTA)2][Au(N9-hypoxanthinate)2] pair followed by anion oligomerization takes place. The results are rationalized with the aid of computational calculations at the TD-DFT level of theory and IRI analysis of the electron density. Full article
(This article belongs to the Section Inorganic Chemistry)
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19 pages, 6777 KB  
Article
A New Chaotic Image Encryption Algorithm Based on Transversals in a Latin Square
by Honglian Shen, Xiuling Shan, Ming Xu and Zihong Tian
Entropy 2022, 24(11), 1574; https://doi.org/10.3390/e24111574 - 31 Oct 2022
Cited by 22 | Viewed by 2555
Abstract
In this paper, a new combinatorial structure is introduced for image encryption, which has an excellent encryption effect on security and efficiency. An n-transversal in a Latin square has the function of classifying all the matrix’s positions, and it can provide a [...] Read more.
In this paper, a new combinatorial structure is introduced for image encryption, which has an excellent encryption effect on security and efficiency. An n-transversal in a Latin square has the function of classifying all the matrix’s positions, and it can provide a pair of orthogonal Latin squares. Employing an n-transversal of a Latin square, we can permutate all the pixels of an image group by group for the first time, then use two Latin squares for auxiliary diffusion based on a chaotic sequence, and finally, make use of a pair of orthogonal Latin squares to perform the second scrambling. The whole encryption process is “scrambling–diffusion–scrambling”. The experimental results indicated that this algorithm passed various tests and achieved a secure and fast encryption effect, which outperformed many of the latest papers. The final information entropy was very close to 8, and the correlation coefficient was approximately 0. All these tests verified the robustness and practicability of the proposed algorithm. Full article
(This article belongs to the Special Issue Applications of Information Theory in Economics)
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25 pages, 4836 KB  
Article
Molecular Structures of the Silicon Pyridine-2-(thi)olates Me3Si(pyX), Me2Si(pyX)2 and Ph2Si(pyX)2 (py = 2-Pyridyl, X = O, S), and Their Intra- and Intermolecular Ligand Exchange in Solution
by Anne Seidel, Mareike Weigel, Lisa Ehrlich, Robert Gericke, Erica Brendler and Jörg Wagler
Crystals 2022, 12(8), 1054; https://doi.org/10.3390/cryst12081054 - 28 Jul 2022
Cited by 5 | Viewed by 2630
Abstract
A series of pyridine-2-olates (pyO) and pyridine-2-thiolates (pyS) of silicon was studied in solid state and in solution. The crystal structures of Me3Si(pyO) (1a), Me3Si(pyS) (1b), Me2Si(pyO)2 (2a), Me2 [...] Read more.
A series of pyridine-2-olates (pyO) and pyridine-2-thiolates (pyS) of silicon was studied in solid state and in solution. The crystal structures of Me3Si(pyO) (1a), Me3Si(pyS) (1b), Me2Si(pyO)2 (2a), Me2Si(pyS)2 (2b), Ph2Si(pyO)2 (3a) and Ph2Si(pyS)2 (3b) were determined by X-ray diffraction. For that purpose, crystals of the (at room temperature) liquid compounds 1a and 1b were grown in a capillary on the diffractometer. Compounds 1a, 1b, 2a, 2b and 3a feature tetracoordinate silicon atoms in the solid state, whereas 3b gave rise to a series of four crystal structures in which the Si atoms of this compound are hexacoordinate. Two isomers (3b1 with all-cis arrangement of the C2N2S2 donor atoms in P1¯, and 3b2 with trans S-Si-S axis in P21/n) formed individual crystal batches, which allowed for their individual 29Si NMR spectroscopic study in the solid state (the determination of their chemical shift anisotropy tensors). Furthermore, the structures of a less stable modification of 3b2 (in C2/c) as well as a toluene solvate 3b2 (toluene) (in P1¯) were determined. In CDCl3, the equimolar solutions of the corresponding pairs of pyO and pyS compounds (2a/2b and 3a/3b) showed substituent scrambling with the formation of the products Me2Si(pyO)(pyS) (2c) and Ph2Si(pyO)(pyS) (3c), respectively, as minor components in the respective substituent exchange equilibrium. Full article
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13 pages, 2299 KB  
Article
Selective Formation of Intramolecular Hydrogen-Bonding Palladium(II) Complexes with Nucleosides Using Unsymmetrical Tridentate Ligands
by Ryoji Mitsuhashi, Yuya Imai, Takayoshi Suzuki and Yoshihito Hayashi
Molecules 2022, 27(7), 2098; https://doi.org/10.3390/molecules27072098 - 24 Mar 2022
Cited by 2 | Viewed by 2788
Abstract
Three palladium(II) complexes with amino-amidato-phenolato-type tridentate ligands were synthesized and characterized by 1H NMR spectroscopy and X-ray crystallography. The strategic arrangement of a hydrogen-bond donor and acceptor adjacent to the substitution site of the PdII complex allowed the selective coordination of [...] Read more.
Three palladium(II) complexes with amino-amidato-phenolato-type tridentate ligands were synthesized and characterized by 1H NMR spectroscopy and X-ray crystallography. The strategic arrangement of a hydrogen-bond donor and acceptor adjacent to the substitution site of the PdII complex allowed the selective coordination of nucleosides. Among two pyrimidine-nucleosides, cytidine and 5-methyluridine, cytidine was successfully coordinated to the PdII complex while 5-methyluridne was not. On the other hand, both purine-nucleosides, adenosine and guanosine, were coordinated to the PdII complex. As purines have several coordination sites, adenosine afforded three kinds of coordination isomers expected from the three different donors. However, guanosine afforded a sole product according to the ligand design such that the formation of double intramolecular hydrogen-bond strongly induced the specific coordination by N1-position of guanine moiety. Furthermore, the preference of the nucleosides was evaluated by scrambling reactions. It was found that the preference of guanosine is nearly twice as high as adenosine and cytidine, owing to the three-point interaction of a coordination bond and two hydrogen bonds. These results show that the combination of a coordination and hydrogen bonds, which is reminiscent of the Watson–Crick base pairing, is an effective tool for the precise recognition of nucleosides. Full article
(This article belongs to the Special Issue Crystal Structures of Metal Complexes)
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16 pages, 1893 KB  
Article
Pattern-Induced Visual Discomfort and Anxiety in Migraineurs: Their Relationship and the Effect of Colour
by Trevor J. Hine and Yolande B. Z. White
Vision 2022, 6(1), 1; https://doi.org/10.3390/vision6010001 - 24 Dec 2021
Cited by 2 | Viewed by 4758
Abstract
In migraineurs, coloured lenses were found to reduce the visual stress caused by an aversive pattern known to trigger migraines by 70%, but do such patterns also produce a low-level anxiety/fear response? Is this response lessened by colour? We sought to investigate this [...] Read more.
In migraineurs, coloured lenses were found to reduce the visual stress caused by an aversive pattern known to trigger migraines by 70%, but do such patterns also produce a low-level anxiety/fear response? Is this response lessened by colour? We sought to investigate this in a study comprising a broad screening component followed by a dot-probe experiment to elicit attentional biases (AB) to aversive patterns. Undergraduate psychology students completed headache and visual discomfort (VD) questionnaires (N = 358), thereby forming a subject pool from which 13 migraineurs with high visual discomfort and 13 no-headache controls with low visual discomfort, matched on age and sex, completed a dot-probe experiment. Paired stimuli were presented for 500 ms: aversive achromatic 3 cpd square wave gratings vs control, scrambled patterns. These conditions were repeated using the colour that was most comfortable for each participant. VD was greater in the more severe headache groups. On all measures, the migraineurs were more anxious than the controls, and a positive relationship was found between VD and trait anxiety. The 3 cpd gratings elicited an aversive AB in the migraine group which was somewhat reduced by the use of colour, and this was not seen in the controls. The results suggest a new role for colour in reducing visual stress via anxiety/fear reduction. Full article
(This article belongs to the Special Issue The Visual Aura in Migraine)
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15 pages, 8845 KB  
Article
Vector Map Encryption Algorithm Based on Double Random Position Permutation Strategy
by Xiaolong Wang, Haowen Yan and Liming Zhang
ISPRS Int. J. Geo-Inf. 2021, 10(5), 311; https://doi.org/10.3390/ijgi10050311 - 7 May 2021
Cited by 16 | Viewed by 4777
Abstract
Encryption of vector maps, used for copyright protection, is of importance in the community of geographic information sciences. However, some studies adopt one-to-one mapping to scramble vertices and permutate the coordinates one by one according to the coordinate position in a plain map. [...] Read more.
Encryption of vector maps, used for copyright protection, is of importance in the community of geographic information sciences. However, some studies adopt one-to-one mapping to scramble vertices and permutate the coordinates one by one according to the coordinate position in a plain map. An attacker can easily obtain the key values by analyzing the relationship between the cipher vector map and the plain vector map, which will lead to the ineffectiveness of the scrambling operation. To solve the problem, a vector map encryption algorithm based on a double random position permutation strategy is proposed in this paper. First, the secret key sequence is generated using a four-dimensional quadratic autonomous hyperchaotic system. Then, all coordinates of the vector map are encrypted using the strategy of double random position permutation. Lastly, the encrypted coordinates are reorganized according to the vector map structure to obtain the cipher map. Experimental results show that: (1) one-to-one mapping between the plain vector map and cipher vector map is prevented from happening; (2) scrambling encryption between different map objects is achieved; (3) hackers cannot obtain the permutation key value by analyzing the pairs of the plain map and cipher map. Full article
(This article belongs to the Special Issue Cartographic Communication of Big Data)
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15 pages, 4397 KB  
Article
SCRaMbLE: A Study of Its Robustness and Challenges through Enhancement of Hygromycin B Resistance in a Semi-Synthetic Yeast
by Jun Yang Ong, Reem Swidah, Marco Monti, Daniel Schindler, Junbiao Dai and Yizhi Cai
Bioengineering 2021, 8(3), 42; https://doi.org/10.3390/bioengineering8030042 - 23 Mar 2021
Cited by 11 | Viewed by 8223
Abstract
Recent advances in synthetic genomics launched the ambitious goal of generating the first synthetic designer eukaryote, based on the model organism Saccharomyces cerevisiae (Sc2.0). Excitingly, the Sc2.0 project is now nearing its completion and SCRaMbLE, an accelerated evolution tool implemented by the integration [...] Read more.
Recent advances in synthetic genomics launched the ambitious goal of generating the first synthetic designer eukaryote, based on the model organism Saccharomyces cerevisiae (Sc2.0). Excitingly, the Sc2.0 project is now nearing its completion and SCRaMbLE, an accelerated evolution tool implemented by the integration of symmetrical loxP sites (loxPSym) downstream of almost every non-essential gene, is arguably the most applicable synthetic genome-wide alteration to date. The SCRaMbLE system offers the capability to perform rapid genome diversification, providing huge potential for targeted strain improvement. Here we describe how SCRaMbLE can evolve a semi-synthetic yeast strain housing the synthetic chromosome II (synII) to generate hygromycin B resistant genotypes. Exploiting long-read nanopore sequencing, we show that all structural variations are due to recombination between loxP sites, with no off-target effects. We also highlight a phenomenon imposed on SCRaMbLE termed “essential raft”, where a fragment flanked by a pair of loxPSym sites can move within the genome but cannot be removed due to essentiality restrictions. Despite this, SCRaMbLE was able to explore the genomic space and produce alternative structural compositions that resulted in an increased hygromycin B resistance in the synII strain. We show that among the rearrangements generated via SCRaMbLE, deletions of YBR219C and YBR220C contribute to hygromycin B resistance phenotypes. However, the hygromycin B resistance provided by SCRaMbLEd genomes showed significant improvement when compared to corresponding single deletions, demonstrating the importance of the complex structural variations generated by SCRaMbLE to improve hygromycin B resistance. We anticipate that SCRaMbLE and its successors will be an invaluable tool to predict and evaluate the emergence of antibiotic resistance in yeast. Full article
(This article belongs to the Special Issue From Yeast to Biotechnology)
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12 pages, 877 KB  
Article
Local Dot Motion, Not Global Configuration, Determines Dogs’ Preference for Point-Light Displays
by Carla J. Eatherington, Lieta Marinelli, Miina Lõoke, Luca Battaglini and Paolo Mongillo
Animals 2019, 9(9), 661; https://doi.org/10.3390/ani9090661 - 6 Sep 2019
Cited by 13 | Viewed by 4786
Abstract
Visual perception remains an understudied area of dog cognition, particularly the perception of biological motion where the small amount of previous research has created an unclear impression regarding dogs’ visual preference towards different types of point-light displays. To date, no thorough investigation has [...] Read more.
Visual perception remains an understudied area of dog cognition, particularly the perception of biological motion where the small amount of previous research has created an unclear impression regarding dogs’ visual preference towards different types of point-light displays. To date, no thorough investigation has been conducted regarding which aspects of the motion contained in point-light displays attract dogs. To test this, pet dogs (N = 48) were presented with pairs of point-light displays with systematic manipulation of motion features (i.e., upright or inverted orientation, coherent or scrambled configuration, human or dog species). Results revealed a significant effect of inversion, with dogs directing significantly longer looking time towards upright than inverted dog point-light displays; no effect was found for scrambling or the scrambling-inversion interaction. No looking time bias was found when dogs were presented with human point-light displays, regardless of their orientation or configuration. The results of the current study imply that dogs’ visual preference is driven by the motion of individual dots in accordance with gravity, rather than the point-light display’s global arrangement, regardless their long exposure to human motion. Full article
(This article belongs to the Special Issue Dog Behaviour, Physiology and Welfare)
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24 pages, 2258 KB  
Article
Synthesis and Characterisation of Lanthanide N-Trimethylsilyl and -Mesityl Functionalised Bis(iminophosphorano)methanides and -Methanediides
by George Marshall, Ashley J. Wooles, David P. Mills, William Lewis, Alexander J. Blake and Stephen T. Liddle
Inorganics 2013, 1(1), 46-69; https://doi.org/10.3390/inorganics1010046 - 12 Dec 2013
Cited by 21 | Viewed by 7439
Abstract
We report the extension of the series of {BIPMTMSH} (BIPMR = C{PPh2NR}2, TMS = trimethylsilyl) derived rare earth methanides by the preparation of [Ln(BIPMTMSH)(I)2(THF)] (Ln = Nd, Gd, Tb), 1a–c, [...] Read more.
We report the extension of the series of {BIPMTMSH} (BIPMR = C{PPh2NR}2, TMS = trimethylsilyl) derived rare earth methanides by the preparation of [Ln(BIPMTMSH)(I)2(THF)] (Ln = Nd, Gd, Tb), 1a–c, in 34–50% crystalline yields via the reaction of [Ln(I)3(THF)3.5] with [Cs(BIPMTMSH)]. Similarly, we have extended the range of {BIPMMesH}(Mes = 2,4,6-trimethylphenyl) derived rare earth methanides with the preparation of [Gd(BIPMMesH)(I)2(THF)2], 3, (49%) and [Yb(BIPMMesH)(I)2(THF)], 4, (26%), via the reaction of [Ln(I)3(THF)3.5] with [{K(BIPMMesH)}2]. Attempts to prepare dysprosium and erbium analogues of 3 or 4 were not successful, with the ion pair species [Ln(BIPMMesH)2][BIPMMesH] (Ln = Dy, Er), 5a–b, isolated in 31–39% yield. The TMEDA (N',N',N",N"-tetramethylethylenediamine) adducts [Ln(BIPMMesH)(I)2(TMEDA)] (Ln = La, Gd), 6a–b, were prepared in quantitative yield via the dissolution of [La(BIPMMesH)(I)2(THF)] or 3 in a TMEDA/THF solution. The reactions of [Ln(BIPMMesH)(I)2(THF)] [Ln = La, Ce, Pr, and Gd (3)] or 6a–b with a selection of bases did not afford [La(BIPMMes)(I)(S)n] (S = solvent) as predicted, but instead led to the isolation of the heteroleptic complexes [Ln(BIPMMes)(BIPMMesH)] (Ln = La, Ce, Pr and Gd), 7ad, in low yields due to ligand scrambling. Full article
(This article belongs to the Special Issue Innovative Inorganic Synthesis)
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