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Search Results (3,196)

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26 pages, 1722 KB  
Review
Profilin and Non-Canonical Wnt Signaling: Coordinating Cytoskeletal Dynamics from Development to Disease
by Samira Alam, Danielle Duncan and Sharmin Hasan
J. Dev. Biol. 2025, 13(3), 31; https://doi.org/10.3390/jdb13030031 - 1 Sep 2025
Abstract
Vertebrate embryonic development relies on tightly regulated signaling pathways that guide morphogenesis, cell fate specification, and tissue organization. Among these, the Wnt signaling pathway plays a central role, orchestrating key developmental events. The non-canonical Wnt pathways, including the Planar Cell Polarity and Wnt/Ca [...] Read more.
Vertebrate embryonic development relies on tightly regulated signaling pathways that guide morphogenesis, cell fate specification, and tissue organization. Among these, the Wnt signaling pathway plays a central role, orchestrating key developmental events. The non-canonical Wnt pathways, including the Planar Cell Polarity and Wnt/Ca2+ branches, are especially critical for regulating cytoskeletal dynamics during gastrulation. Recent studies highlight that these pathways interface with cytoskeletal effectors to control actin remodeling in response to extracellular cues. One such effector is Profilin, a small, evolutionarily conserved actin-binding protein that modulates actin polymerization and cellular architecture. Profilins, particularly Profilin1 and 2, are known to interact with Daam1, a formin protein downstream of PCP signaling, thereby linking Wnt signals to actin cytoskeletal regulation. Emerging evidence suggests that Profilins are active signaling intermediates that contribute to morphogenetic processes. Their context-dependent interactions and differential expression across species also suggest that they play specialized roles in development and disease. This review synthesizes the current understanding of Profilin’s role in non-canonical Wnt signaling, examining its molecular interactions and contributions to cytoskeletal control during development. By integrating data across model systems, we aim to clarify how Profilins function at the intersection of signaling and cytoskeletal dynamics, with implications for both developmental biology and disease pathogenesis. Full article
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17 pages, 4114 KB  
Article
Non-Precipitation Echo Identification in X-Band Dual-Polarization Weather Radar
by Zihang Zhao, Hao Wen, Lei Wu, Ruiyi Li, Ting Zhuang and Yang Zhang
Remote Sens. 2025, 17(17), 3023; https://doi.org/10.3390/rs17173023 - 31 Aug 2025
Abstract
This study proposes a novel quality control method combining fuzzy logic and threshold discrimination for processing X-band dual-polarization radar data from Beijing. The method effectively eliminates non-precipitation echoes, including electromagnetic interference, clear-air echoes, and ground clutter through five key steps: (1) Identifying electromagnetic [...] Read more.
This study proposes a novel quality control method combining fuzzy logic and threshold discrimination for processing X-band dual-polarization radar data from Beijing. The method effectively eliminates non-precipitation echoes, including electromagnetic interference, clear-air echoes, and ground clutter through five key steps: (1) Identifying electromagnetic interference using continuity of reflectivity across adjacent elevation angles, radial mean correlation coefficient, and differential reflectivity; (2) Preserving precipitation data in ground clutter-mixed regions by jointly utilizing the difference in reflectivity before and after clutter suppression by the signal processor, and characteristic value proportions; (3) Developing a fuzzy logic algorithm with six parameters (e.g., reflectivity texture, depolarization ratio) for ground clutter and clear-air echoes removal; (4) Filtering echoes with missing dual-polarization variables using cross-elevation mean reflectivity, mean correlation coefficient, and valid range bin proportion; (5) Removing residual noise via radial/azimuthal reflectivity continuity analysis. Validation with 635 PPI scans demonstrates high identification accuracy across echo types: 93.5% for electromagnetic interference, 98.4% for ground clutter, 97.7% for clear-air echoes, and 98.2% for precipitation echoes. Full article
14 pages, 1303 KB  
Article
Non-Targeted Metabolomic Analysis of Ethanol Extract of Propolis and Its Anti-Inflammatory Effects in LPS-Induced BV2 Microglial Cells via the TLR4 Signaling Pathway
by Xiaolan Xu, Chunxia Li, Yuxuan Zhu, Shuangshuang Zhao, Fangjing Wu, Qian He, Lizhen Wei, Xinle Duan and Jianghong Li
Nutrients 2025, 17(17), 2831; https://doi.org/10.3390/nu17172831 - 30 Aug 2025
Viewed by 44
Abstract
Propolis contains abundant flavonoid and phenolic compounds, whose composition and concentration vary significantly in different geographical origins, thereby affecting its bioactive properties including anti-inflammatory, antioxidant, and antimicrobial activities. In this study, the flavonoid and phenolic content in the ethanol extract of propolis (EEP) [...] Read more.
Propolis contains abundant flavonoid and phenolic compounds, whose composition and concentration vary significantly in different geographical origins, thereby affecting its bioactive properties including anti-inflammatory, antioxidant, and antimicrobial activities. In this study, the flavonoid and phenolic content in the ethanol extract of propolis (EEP) from Henan (HN) and Shandong (SD) provinces was quantitatively analyzed, and the results showed that concentrations of both bioactive components in HN were slightly higher than those in SD. The non-targeted metabolomics technology was further employed to analyze the components of EEP, and a total of 10683 metabolites were detected. In the comparison between the samples of HN and SD, there were a total of 1436 differential metabolites, with 553 decreased and 883 increased in the HN sample. Among them, there were 205 differential metabolites related to flavonoids and phenols, with 108 decreased and 97 increased in the HN sample. However, a greater number of carboxylic acids and derivatives, fatty derivatives and organooxygen metabolites were found at higher relative levels in the HN sample. As a result, the EEP of the HN sample was selected to investigate its inhibitory effect on inflammation in lipopolysaccharide (LPS)-induced BV2 microglia cells. The results showed that LPS promoted the M1 polarization of BV2 microglia. However, treatment with EEP at concentrations of 10 µg/mL, 5 µg/mL, and 2.5 µg/mL could partially restore the cell morphology to its non-activated state. Meanwhile, LPS stimulation increased the protein levels of IL-1β, IL-6 and TNF-α significantly, as well as the relative gene expression levels of IL-1β, IL-6, TNF-α, COX-2, iNOS and TLR4. After treatment with the EEP, the expression levels of these three proteins and six genes were significantly decreased. These findings revealed that EEP effectively inhibited the M1 polarization of LPS-induced BV2 cells and decreased the expression of inflammatory factors, indicating its potential as a therapeutic agent for neuroinflammation. Full article
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18 pages, 1693 KB  
Article
Novel Microwave-Assisted Cloud Point Extraction Prior to Gas Chromatography–Mass Spectrometry for the Extraction of Organochlorine and Organophosphorus Pesticides from Fruit Juices
by Asya Hristozova and Kiril Simitchiev
Separations 2025, 12(9), 231; https://doi.org/10.3390/separations12090231 - 29 Aug 2025
Viewed by 72
Abstract
The current research aims to develop a simple, sensitive, and green analytical method for the group extraction/monitoring of 19 organochlorine and organophosphorus pesticides from fruit juices using microwave radiation to assist a cloud point extraction (MW-CPE) in combination with re-extraction in hexane and [...] Read more.
The current research aims to develop a simple, sensitive, and green analytical method for the group extraction/monitoring of 19 organochlorine and organophosphorus pesticides from fruit juices using microwave radiation to assist a cloud point extraction (MW-CPE) in combination with re-extraction in hexane and GC-MS/MS detection. The main experimental factors affecting the CPE and re-extraction have been optimized. The matrix-matched calibration was performed, and the limit of quantification (LOQ) for all studied pesticides at optimized conditions ranged between 5 and 47 ng L−1. When applying only 0.25 mL of hexane for re-extraction, the proposed method shows good accuracy and precision. The “greenness” of the developed MW-CPE-GC-MS/MS method was assessed using the AGREE prep software. The method has been successfully implemented in pesticide analysis in commercially available fruit juices (lemon concentrate and red apple juice). The recovery values obtained for most analytes were within the range of 71% and 114% and RSD below 20% (exept Heptahlor, Aldrin, o,p-DDD, p,p-DDD and o,p-DDT, p,p-DDT). The developed method combines a preconcentration with a sample clean-up step due to the extraction of the pigments into the non-polar micelles during the extraction step, and deposition in the intermediate layer of MgSO4 during the re-extraction step. Full article
(This article belongs to the Special Issue Novel Methods for the Analysis of Active and Toxic Components in Food)
25 pages, 338 KB  
Article
Means and Meanings in Circular Economy: An MDA-Based Exploratory Analysis
by Federico Barnabè and Riccardo Santoni
Sustainability 2025, 17(17), 7768; https://doi.org/10.3390/su17177768 - 29 Aug 2025
Viewed by 202
Abstract
This study aims to examine how organizations disclose Circular Economy (CE) information through multimodal communication. While conventional reporting often fails to capture the complexity of CE, we adopt a Multi-Discourse Analysis (MDA) framework that integrates textual, numerical, visual, spatial, and sensory dimensions. The [...] Read more.
This study aims to examine how organizations disclose Circular Economy (CE) information through multimodal communication. While conventional reporting often fails to capture the complexity of CE, we adopt a Multi-Discourse Analysis (MDA) framework that integrates textual, numerical, visual, spatial, and sensory dimensions. The methodology involves a qualitative content analysis of non-financial reports from 13 Italian electronics firms, a sector with a high environmental impact and low circularity. Key findings show a dominance of textual narratives and increasing use of numerical indicators aligned with the European Union Taxonomy. Visual elements are underutilized and largely symbolic, reflecting a product-centric rather than systemic view of circularity. The spatial dimension, operationalized through ESRS E5 categories, reveals fragmented CE integration and limited forward-looking financial disclosures. The sensory dimension, assessed via integrated thinking, highlights a polarization between firms that embed CE into strategy and those that do not. Recommendations are provided to enhance the clarity, comparability, and strategic relevance of CE disclosures, with implications for corporate practice, regulatory development, and future research. Overall, this study advances the understanding of CE by applying MDA to reveal the interplay of communicative modes, the gaps in systemic representation, and the degree of strategic integration in sustainability reporting. Full article
12 pages, 1965 KB  
Article
Quantifying Influence of Beam Drift on Linear Retardance Measurement in Dual-Rotating Retarder Mueller Matrix Polarimetry
by Kaisha Deng, Nan Zeng, Liangyu Deng, Shaoxiong Liu, Hui Ma, Chao He and Honghui He
Photonics 2025, 12(9), 868; https://doi.org/10.3390/photonics12090868 - 28 Aug 2025
Viewed by 185
Abstract
Mueller matrix polarimetry is recently attracting more and more attention for its diagnostic potentials. However, for prevalently used division of time Mueller matrix polarimeter based on dual-rotating retarder scheme, beam drift induced by rotating polarizers and waveplates introduces spatial misalignment and pseudo-edge artifacts [...] Read more.
Mueller matrix polarimetry is recently attracting more and more attention for its diagnostic potentials. However, for prevalently used division of time Mueller matrix polarimeter based on dual-rotating retarder scheme, beam drift induced by rotating polarizers and waveplates introduces spatial misalignment and pseudo-edge artifacts in imaging results, hindering following accurate microstructural features characterization. In this paper, we quantitatively analyze the beam drift phenomenon in dual-rotating retarder Mueller matrix microscopy and its impact on linear retardance measurement, which is frequently used to reflect tissue fiber arrangement. It is demonstrated that polarizer rotation induces larger beam drift than waveplate rotation due to surface non-uniformity and stress deformation. Furthermore, for waveplates rotated constantly in dual-rotating retarder scheme, their tilt within polarization state analyzer can result in more drift and throughput loss than those within polarization state generator. Finally, phantom and tissue experiments confirm that beam drift, rather than inherent optical path changes, dominates the systematic overestimation of linear retardance in boundary image regions. The findings highlight beam drift as a dominant error source for quantifying linear retardance, necessitating careful optical design alignment and a reliable registration algorithm to obtain highly accurate polarization data for training machine learning models of pathological diagnosis using Mueller matrix microscopy. Full article
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19 pages, 11796 KB  
Article
Improved Clutter Suppression and Detection of Moving Target with a Fully Polarimetric Radar
by Zhilong Zhao, Zhongkai Wen, Changhu Xue, Zhiying Cui, Xutao Hou, Haibin Zhu, Yaxin Mu, Zongqiang Liu, Zhenghuan Xia and Xin Liu
Remote Sens. 2025, 17(17), 2975; https://doi.org/10.3390/rs17172975 - 27 Aug 2025
Viewed by 222
Abstract
Remote sensing of moving targets, particularly pedestrians on the road, is crucial for advanced driver assistance systems. However, pedestrian detection using the radar system remains an ongoing challenge due to the radar cross section (RCS) of pedestrians being much smaller than that of [...] Read more.
Remote sensing of moving targets, particularly pedestrians on the road, is crucial for advanced driver assistance systems. However, pedestrian detection using the radar system remains an ongoing challenge due to the radar cross section (RCS) of pedestrians being much smaller than that of the clutter. Existing radar systems and pedestrian detection methods predominantly rely on the single-polarization radar, while research on the fully polarized radar for pedestrian detection is relatively limited. In this paper, the L-band fully polarimetric radar system is developed for pedestrian detection, and based on the full polarized radar echo HH, HV, VH, and VV, a novel clutter suppression method is proposed, which integrates the optimal polarization states of antennas and optimal scattering characteristics of pedestrians. Moreover, the field experiment has been conducted, and the results demonstrate that the signal-to-clutter-plus-noise ratio (SCNR) of the total power signal of full-polarization echoes is higher than that of single-polarization echoes, and the proposed clutter suppression method is able to reduce the non-stationary clutter and the interference signal generated by the multipath effect, thereby improving the SCNR. Furthermore, the OTSU algorithm is employed to detect pedestrian targets using radar data before and after clutter suppression, and the results demonstrate that the proposed method yields superior detection performance. These findings justify the potential of fully polarimetric radar in enhancing pedestrian detection. Full article
(This article belongs to the Special Issue Remote Sensing Advances in Urban Traffic Monitoring (Second Edition))
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28 pages, 15533 KB  
Article
Numerical Study on High-Speed Icebreaking of a Hemispherically Capped Cylinder Based on the Smoothed Particle Hydrodynamics Method
by Xiaowei Cai, Zhenwang Li, Jun Zhang, Jie Zhao and Yanmei Jiao
J. Mar. Sci. Eng. 2025, 13(9), 1637; https://doi.org/10.3390/jmse13091637 - 27 Aug 2025
Viewed by 211
Abstract
This work develops an Updated Lagrangian Smoothed Particle Hydrodynamics (ULSPH) framework to simulate high-speed icebreaking by a hemispherically capped cylinder (HCC). Using a self-programmed C++ code with Drucker–Prager damage criteria, this work systematically analyzes how impact velocity (100–200 m/s), ice thickness (10–40 cm), [...] Read more.
This work develops an Updated Lagrangian Smoothed Particle Hydrodynamics (ULSPH) framework to simulate high-speed icebreaking by a hemispherically capped cylinder (HCC). Using a self-programmed C++ code with Drucker–Prager damage criteria, this work systematically analyzes how impact velocity (100–200 m/s), ice thickness (10–40 cm), and impact angle (60–90°) govern structural loads and ice failure modes. The head of the HCC is always the stress concentration area, and the peak value of the impact force increases non-linearly with increasing the initial velocity from 100 m/s to 200 m/s. The increase in ice layer thickness from 10 cm to 40 cm raises the peak value of the impact force by 18.1%. The ice layer deformation shows three-stage characteristics: collision depression, penetration perforation, and through-spray. When the impact angle α is non-vertical, the strain of the ice layer is asymmetrically distributed, and the component of the peak impact force along the y direction increases significantly with the decrease in the impact angle, reaching 129.3 kN at α = 60°. Results reveal velocity-driven nonlinear force amplification, asymmetric strain distribution at oblique angles, and critical stress concentration at the HCC head, providing design insights for polar equipment. Full article
(This article belongs to the Section Ocean Engineering)
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15 pages, 409 KB  
Review
The Therapeutic Potential of Stem Cells in Depression
by Lidia Jurczenko, Alina Semeniuk and Jerzy Waldemar Leszek
Int. J. Mol. Sci. 2025, 26(17), 8306; https://doi.org/10.3390/ijms26178306 - 27 Aug 2025
Viewed by 330
Abstract
Major depressive disorder (MDD) is a prevalent and disabling psychiatric condition with limited treatment options for patients who are resistant to conventional pharmacological and psychotherapeutic interventions. Stem cell (SC)-based therapies have emerged as a promising experimental approach, offering multifaceted mechanisms of action including [...] Read more.
Major depressive disorder (MDD) is a prevalent and disabling psychiatric condition with limited treatment options for patients who are resistant to conventional pharmacological and psychotherapeutic interventions. Stem cell (SC)-based therapies have emerged as a promising experimental approach, offering multifaceted mechanisms of action including neurogenesis, immunomodulation, antioxidative protection, and neuromodulation. This narrative review synthesizes current evidence from preclinical studies and early-phase clinical trials on the efficacy of mesenchymal stem cells (MSCs), neural stem cells (NSCs), and induced pluripotent stem cells (iPSCs) in alleviating depressive-like behaviors. Mechanistic insights include enhanced hippocampal neurogenesis, modulation of the brain-derived neurotrophic factor (BDNF)–TrkB pathway, attenuation of neuroinflammation through microglial polarization, and restoration of serotonergic signaling via peripheral-to-central pathways such as via the vagus nerve. In addition, the therapeutic potential of extracellular vesicles (EVs) and intranasal administration as non-invasive delivery strategies is discussed. While animal and first preclinical studies suggest potential benefit, significant translational barriers remain, including issues of scalability, long-term safety, and ethical considerations. Further rigorous studies are needed to validate stem-cell-based therapies as viable treatments for MDD. Full article
(This article belongs to the Section Molecular Neurobiology)
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31 pages, 3129 KB  
Review
A Review on Gas Pipeline Leak Detection: Acoustic-Based, OGI-Based, and Multimodal Fusion Methods
by Yankun Gong, Chao Bao, Zhengxi He, Yifan Jian, Xiaoye Wang, Haineng Huang and Xintai Song
Information 2025, 16(9), 731; https://doi.org/10.3390/info16090731 - 25 Aug 2025
Viewed by 414
Abstract
Pipelines play a vital role in material transportation within industrial settings. This review synthesizes detection technologies for early-stage small gas leaks from pipelines in the industrial sector, with a focus on acoustic-based methods, optical gas imaging (OGI), and multimodal fusion approaches. It encompasses [...] Read more.
Pipelines play a vital role in material transportation within industrial settings. This review synthesizes detection technologies for early-stage small gas leaks from pipelines in the industrial sector, with a focus on acoustic-based methods, optical gas imaging (OGI), and multimodal fusion approaches. It encompasses detection principles, inherent challenges, mitigation strategies, and the state of the art (SOTA). Small leaks refer to low flow leakage originating from defects with apertures at millimeter or submillimeter scales, posing significant detection difficulties. Acoustic detection leverages the acoustic wave signals generated by gas leaks for non-contact monitoring, offering advantages such as rapid response and broad coverage. However, its susceptibility to environmental noise interference often triggers false alarms. This limitation can be mitigated through time-frequency analysis, multi-sensor fusion, and deep-learning algorithms—effectively enhancing leak signals, suppressing background noise, and thereby improving the system’s detection robustness and accuracy. OGI utilizes infrared imaging technology to visualize leakage gas and is applicable to the detection of various polar gases. Its primary limitations include low image resolution, low contrast, and interference from complex backgrounds. Mitigation techniques involve background subtraction, optical flow estimation, fully convolutional neural networks (FCNNs), and vision transformers (ViTs), which enhance image contrast and extract multi-scale features to boost detection precision. Multimodal fusion technology integrates data from diverse sensors, such as acoustic and optical devices. Key challenges lie in achieving spatiotemporal synchronization across multiple sensors and effectively fusing heterogeneous data streams. Current methodologies primarily utilize decision-level fusion and feature-level fusion techniques. Decision-level fusion offers high flexibility and ease of implementation but lacks inter-feature interaction; it is less effective than feature-level fusion when correlations exist between heterogeneous features. Feature-level fusion amalgamates data from different modalities during the feature extraction phase, generating a unified cross-modal representation that effectively resolves inter-modal heterogeneity. In conclusion, we posit that multimodal fusion holds significant potential for further enhancing detection accuracy beyond the capabilities of existing single-modality technologies and is poised to become a major focus of future research in this domain. Full article
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16 pages, 1429 KB  
Article
COSMO-RS Solubility Screening and Coumarin Extraction from Pterocaulon polystachyum with Deep Eutectic Solvents
by Victor Hugo Rodrigues, Arthur Cavassa, Júlia Cardeal, Nathalya Brazil, Helder Teixeira, Gilsane von Poser, Rubem Mário Vargas, Ana Rita Duarte and Eduardo Cassel
Molecules 2025, 30(17), 3468; https://doi.org/10.3390/molecules30173468 - 23 Aug 2025
Viewed by 517
Abstract
Deep eutectic solvents (DESs) have been studied to obtain extracts from medicinal plants, aiming for a more environmentally friendly process. Aligned with this initiative, the use of predictive thermodynamic models for screening the best solvent represents a theoretical action to reduce experimental time [...] Read more.
Deep eutectic solvents (DESs) have been studied to obtain extracts from medicinal plants, aiming for a more environmentally friendly process. Aligned with this initiative, the use of predictive thermodynamic models for screening the best solvent represents a theoretical action to reduce experimental time and cost. Therefore, this study aimed to perform and validate a relative solubility screening of 5-methoxy-6,7-methylenedioxycoumarin and prenyletin-methyl-ether at 313 K in choline chloride, menthol, and betaine-based DES, using the COSMO-RS model in COSMOThermX software. The density of DES was also predicted with a maximum error of 7.31% for this property. Ultrasound-assisted extraction (UAE) with DES at 313 K, 30 min, and a solid/liquid ratio of 1:20 (w/w) was performed to confirm the theoretical solubility results experimentally, as the extracts were analyzed through ultrafast liquid chromatography (UFLC) for coumarin content. For the results, the coumarin molecules presented intense peaks in the nonpolar region of their σ-profile, and the relative solubility screening indicated the DES Men/Lau (2:1), known for its hydrophobic nature and low polarity, as the best DES to solubilize these coumarins. Nevertheless, the UFLC results, and the complementary solubility screening of pigments, showed an interaction preference of this DES with chlorophylls instead of coumarins. This result was corroborated by spectrophotometric analysis of the extracts in UV-Vis, demonstrating that experimental validation is still mandatory in extraction processes and that predictive methodologies such as COSMO-RS should be used as guiding tools and analyzed in a greater context, considering the complexity of plant matrices in the beginning of simulations. Full article
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21 pages, 2057 KB  
Review
A Comprehensive Review of Niosomes: Composition, Structure, Formation, Characterization, and Applications in Bioactive Molecule Delivery Systems
by Alfredo Amaury Bautista-Solano, Gloria Dávila-Ortiz, María de Jesús Perea-Flores and Alma Leticia Martínez-Ayala
Molecules 2025, 30(17), 3467; https://doi.org/10.3390/molecules30173467 - 23 Aug 2025
Viewed by 552
Abstract
Niosomes are nanocarriers with a bilayer structure, consisting of a polar region and a non-polar region. This unique structure allows them to encapsulate compounds with varying polarities, addressing solubility challenges in the transport and delivery of bioactive molecules. The formation of niosomes involves [...] Read more.
Niosomes are nanocarriers with a bilayer structure, consisting of a polar region and a non-polar region. This unique structure allows them to encapsulate compounds with varying polarities, addressing solubility challenges in the transport and delivery of bioactive molecules. The formation of niosomes involves key structural, geometric, and thermodynamic factors influenced by the choice of surfactants and preparation methods. These factors, including the critical packing factor and the hydrophilic–lipophilic balance (HLB), play a crucial role in determining the properties of the final niosomes. Additionally, the use of Tandford’s equations allows for the calculation of geometric parameters. These factors determine the structural integrity and functional properties of niosomes, making it possible to design functional niosomes with characteristics tailored for specific applications. This ability to design niosomes with desired properties is especially valuable in biomedical fields, where precise control over drug delivery and targeting is essential. This review highlights the importance of niosome formulation and presents examples of niosomes that have been functionalized for specific applications, including anticancer treatments, immunological treatments, and their action in the central nervous system. Full article
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15 pages, 4156 KB  
Article
A Genome-Wide Modeling and Characterization Study of Pleckstrin Homology Domains in Chlamydomonas reinhardtii
by Münevver Aksoy, Marina Krupitskaya and Shaneen M. Singh
Plants 2025, 14(17), 2607; https://doi.org/10.3390/plants14172607 - 22 Aug 2025
Viewed by 400
Abstract
The function of pleckstrin homology (PH) domains is to recognize and bind to specific phosphoinositides in the membranes as part of diverse cellular signaling processes. The structure of some PH domains has been solved by X-ray crystallography, but structures of many PH domains [...] Read more.
The function of pleckstrin homology (PH) domains is to recognize and bind to specific phosphoinositides in the membranes as part of diverse cellular signaling processes. The structure of some PH domains has been solved by X-ray crystallography, but structures of many PH domains remain to be elucidated. In green alga Chlamydomonas reinhardtii, none of the PH domains have been crystallized or characterized. The goal of our study was to model and characterize in detail the structures of all eleven of the PH domains identified in C. reinhardtii. Our computational strategy of integrating the information available on sequence, structure, and function with modeling and biophysical characterization has uncovered new biological predictions for these proteins. These predictions can be validated by future rationally designed experimental studies as an extension of this work. Our results suggest that nine of the eleven C. reinhardtii PH domains show the classical electrostatic polarization of PH domains with a positively charged binding pocket and negatively charged opposing end. Our docking results predict only two PH domains bind specifically to a particular phosphoinositide, while all the other nine PH domains may be able to bind various inositol phospholipids. The lack of preference for a specific phosphoinositide headgroup implies that the positive charge in the binding pocket of the PH domains may be crucial in driving the interaction with the negatively charged phosphoinositides in a non-specific or promiscuous manner. We identified putative homologs of Dynamin GTPase, calcium/calmodulin-dependent kinase, Arf GAP, Rhythm of Chloroplast 23 (ROC23), and oxysterol binding proteins in C. reinhardtii that contain PH domains. In addition, we identified two PH domain-containing proteins that may play a role in the mating process and others that may be important for signaling under phosphate deficiency. Full article
(This article belongs to the Special Issue Microalgae Photobiology, Biotechnology, and Bioproduction)
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16 pages, 9200 KB  
Article
Construction of Donor–Acceptor Heterojunctions via Microphase Separation of Discotic Liquid Crystals with Ambipolar Transport
by Heng Liu, Mingsi Xie, Yaohong Liu, Gaojun Jia, Ruijuan Liao, Ao Zhang, Yi Fang, Xiaoli Song, Chunxiu Zhang and Haifeng Yu
Molecules 2025, 30(16), 3441; https://doi.org/10.3390/molecules30163441 - 21 Aug 2025
Viewed by 512
Abstract
A series of novel discotic liquid crystalline donor–acceptor hybrid heterojunctions were prepared by blending the triphenylene derivative (T5E36) as donor and perylene tetracarboxylic esters as acceptor. Mesophases of blends were characterized by using polarized optical microscopy, differential scanning calorimetry, and X-ray diffraction. Results [...] Read more.
A series of novel discotic liquid crystalline donor–acceptor hybrid heterojunctions were prepared by blending the triphenylene derivative (T5E36) as donor and perylene tetracarboxylic esters as acceptor. Mesophases of blends were characterized by using polarized optical microscopy, differential scanning calorimetry, and X-ray diffraction. Results suggest that all the blends formed liquid crystalline phases, where both compounds in the blends self-assembled separately into columns yet cooperatively contributed to the overall hexagonal or tetragonal columnar mesophase structure. The charge carrier mobilities were characterized using a time-of-flight technique. The phase-separated columnar nanostructures of the donor and acceptor components play an important role in the formation of molecular heterojunctions exhibiting highly efficient ambipolar charge transport, with mobilities on the order of 10−3 cm2 V−1 s−1. These blends with ambipolar transport properties have great potential for application in non-fullerene organic solar cells, particularly in bulk heterojunction architectures. Full article
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21 pages, 3804 KB  
Article
Diversity of RNA Viruses and Circular Viroid-like Elements in Heterobasidion spp. in Near-Natural Forests of Bosnia and Herzegovina
by László Benedek Dálya, Ondřej Hejna, Marcos de la Peña, Zoran Stanivuković, Tomáš Kudláček and Leticia Botella
Viruses 2025, 17(8), 1144; https://doi.org/10.3390/v17081144 - 20 Aug 2025
Viewed by 465
Abstract
Heterobasidion root rot fungi represent a major threat to conifer forest stands, and virocontrol (biocontrol) has been proposed as an alternative strategy of disease management in recent years. Here, we investigated the occurrence of RNA viruses and viroid-like genomes in Heterobasidion annosum sensu [...] Read more.
Heterobasidion root rot fungi represent a major threat to conifer forest stands, and virocontrol (biocontrol) has been proposed as an alternative strategy of disease management in recent years. Here, we investigated the occurrence of RNA viruses and viroid-like genomes in Heterobasidion annosum sensu lato in near-natural forests of Bosnia and Herzegovina (Dinaric Alps), a region previously unexplored in this regard. Seventeen H. annosum s.l. isolates were screened for virus presence by RNA Sequencing and bioinformatic analyses. In total, 32 distinct mycoviruses were discovered in the datasets, 26 of which were previously unknown. The detected viruses represent two dsRNA (Partitiviridae and Curvulaviridae), six linear ssRNA (Mitoviridae, Narnaviridae, Botourmiaviridae, Virgaviridae, Benyviridae, and Deltaflexiviridae) and three circular ssRNA (Dumbiviridae, Quambiviridae, and Trimbiviridae) virus families. In addition to the known circular ambiviruses with their hammerhead (HHRz) and hairpin (HPRz) ribozymes, two other smaller non-coding circular RNAs of ca. 910 bp each were identified encoding HHRz and deltavirus (DVRz) ribozymes in both polarities of their genomes. This study documents the first report of a putative viroid-like RNA agent in Heterobasidion, along with beny-like and deltaflexivirus-like viruses in Heterobasidion abietinum, and expands the known virosphere of Heterobasidion species in Southeastern European forests. Full article
(This article belongs to the Section Viruses of Plants, Fungi and Protozoa)
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