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29 pages, 2123 KB  
Systematic Review
Biotechnological Application of Wild Microbial Isolates from Traditional Fermented Foods: A Systematic Review
by Andrea Sandoval-López, Dulce Velásquez-Reyes and José Nabor Haro-González
Appl. Microbiol. 2026, 6(9), 99; https://doi.org/10.3390/applmicrobiol6090099 - 24 Aug 2026
Abstract
Traditional fermented foods are important reservoirs of wild microorganisms with technological, sensory, protective, and functional potential. However, the performance of these isolates in controlled or compositionally different food matrices remains fragmented across microbial groups and food systems. This systematic review synthesized evidence on [...] Read more.
Traditional fermented foods are important reservoirs of wild microorganisms with technological, sensory, protective, and functional potential. However, the performance of these isolates in controlled or compositionally different food matrices remains fragmented across microbial groups and food systems. This systematic review synthesized evidence on using wild microbial isolates from traditional fermented foods and beverages as starters or potential probiotic cultures. The conducted a systematic search exclusively in Scopus, following PRISMA 2020, to include original research articles published between 2021 and 2026, yielding 68 eligible studies. The included studies were analyzed by geographical origin, isolation source, recipient matrix, microbial group, and key physicochemical, technological, sensory, microbiological, nutritional, and functional outcomes. The evidence was organized into wild yeasts and filamentous fungi, lactic acid bacteria (LAB), Bacillus isolates, and defined mixed microbial cultures. Across food matrices, microbial incorporation frequently accelerated acidification, shortened fermentation time, modified volatile compound profiles, and altered texture, color, enzymatic activity, or substrate utilization. Sensory responses improved aroma, flavor, texture, and acceptance, whereas others produced profiles that deviated from the characteristic product and reduced overall liking. Functional effects included increases in phenolic compounds, antioxidant activity, GABA, folate, peptides, and resistant starch, along with reductions in phytates, nitrites, biogenic amines, aflatoxins, and nondigestible oligosaccharides. Researchers also reported antimicrobial, antifungal, protective, and preliminary probiotic properties. Defined mixed microbial cultures often provided complementary metabolic effects, although true synergistic interactions were demonstrated only sporadically. Overall, wild isolates from traditional fermentations represent promising resources for food bioprocessing; however, their performance varies widely across strains, recipient matrices, experimental conditions, and outcomes evaluated. Consequently, their application requires strain–matrix validation, comprehensive sensory assessment, safety characterization, and evaluation under processing and storage conditions relevant to industrial production. Full article
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32 pages, 11815 KB  
Article
Exploring the Therapeutic Effects of Artemisia rupestris L. Extract on Metabolic Dysfunction-Associated Fatty Liver Disease: Network Pharmacology and In Vitro Experiments
by Zheming Xiong, Yijie Su, Luping Shi, Shuyuan Ge, Ge Wang, Fangyu Li, Xu Liu, Jianguang Li and Zejiang Ma
Pharmaceuticals 2026, 19(9), 1338; https://doi.org/10.3390/ph19091338 - 24 Aug 2026
Abstract
Background: Metabolic dysfunction-associated fatty liver disease (MAFLD) is a prevalent chronic liver disorder with limited pharmacological therapies, highlighting the need for novel multi-target agents from traditional medicinal plants. Artemisia rupestris L. has hepatoprotective effects, but its active constituents and mechanisms against MAFLD [...] Read more.
Background: Metabolic dysfunction-associated fatty liver disease (MAFLD) is a prevalent chronic liver disorder with limited pharmacological therapies, highlighting the need for novel multi-target agents from traditional medicinal plants. Artemisia rupestris L. has hepatoprotective effects, but its active constituents and mechanisms against MAFLD remain unexplored. Methods: The chemical profile of an ultrasonically-assisted 70% ethanol extract of Artemisia rupestris L. (ARE) was determined using UPLC-Q-TOF-MS. Network pharmacology, molecular docking, 100-ns molecular dynamics (MD) simulations, and in vitro experiments in oleic acid-induced HepG2 cells were integrated to identify active compounds, core targets, and pathways, and to validate lipid-lowering and hepatoprotective effects. Results: Seventy-eight compounds were identified, mainly flavonoids, phenolic acids, and terpenoids. Network analysis highlighted AKR1B10 and MAPK14 as core targets and isorupestonic acid and rupestonic acid as key components. MD simulations supported the stable binding of isorupestonic acid to AKR1B10 (RMSD ~1.6–3.2 Å), driven by van der Waals and electrostatic interactions. In vitro, ARE dose-dependently reduced intracellular triglycerides, total cholesterol, and LDL-C, decreased lipid droplets, and lowered AST/ALT levels, with a high-dose efficacy comparable to atorvastatin. Conclusions: Through in vitro experiments and network pharmacology analyses, this study preliminarily elucidated the beneficial effects of ARE on lipid deposition in hepatocytes and its potential mechanism, thereby providing an experimental basis and potential avenues for subsequent in vivo studies on pharmacodynamics, pharmacokinetics, and toxicology. Full article
(This article belongs to the Section Medicinal Chemistry)
23 pages, 2408 KB  
Article
Comparative Lipophilic Phytochemical Profiling and Bioactivity Assessment of Different Organs of Mahonia aquifolium (Pursh) Nutt.: Integrated Analysis of n-Hexane Extracts, Essential Oils and Fatty Acids
by Kübra Öğüt, Ana Belen Cerezo Lopez and Gülmira Özek
Plants 2026, 15(17), 2574; https://doi.org/10.3390/plants15172574 - 24 Aug 2026
Abstract
Mahonia aquifolium (Pursh) Nutt. is a medicinal plant known for its diverse phytochemical composition; however, information on the lipophilic constituents of its different organs remains limited. This study aimed to characterize the lipophilic composition and associated bioactivities of n-hexane extracts obtained by [...] Read more.
Mahonia aquifolium (Pursh) Nutt. is a medicinal plant known for its diverse phytochemical composition; however, information on the lipophilic constituents of its different organs remains limited. This study aimed to characterize the lipophilic composition and associated bioactivities of n-hexane extracts obtained by ultrasound-assisted extraction from leaves, flowers, fruit pulp, and seeds of M. aquifolium. The extracts were analyzed using GC–FID/MS of silylated extracts, FAME–GC, MSD–SPME, and UHPLC–HRMS/MS, and were evaluated for antioxidant and α-amylase inhibitory activities. Nonacosan-10-ol was identified as the predominant constituent in fruit pulp and flower extracts, whereas α-linolenic acid was the major fatty acid in leaves and seeds. Chlorogenic acid was detected as the major phenolic compound in all n-hexane extracts, and 3-hydroxytyrosol was also identified in the lipophilic extracts. The flower extract exhibited notable α-amylase inhibitory activity together with the highest CUPRAC and TEAC values, while the seed extract showed the strongest DPPH radical scavenging activity. The leaf extract demonstrated the highest ORAC value and β-carotene bleaching inhibition. These findings reveal substantial differences in the lipophilic composition and bioactivity profiles among M. aquifolium organs and provide new insights into the valorization of different plant parts as sources of bioactive lipophilic constituents. Full article
(This article belongs to the Special Issue Bioactivity Identification and Analysis of Phytochemicals)
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31 pages, 9092 KB  
Article
Exploring the Anti-Inflammatory Potential of Saudi Propolis Through Phytochemical Characterization, Molecular Docking, and Dynamic Simulation
by Hanan Aati, Jawaher H. Alqahtani, Areej Al-Taweel and Sultan Y. Aati
Pharmaceutics 2026, 18(9), 1050; https://doi.org/10.3390/pharmaceutics18091050 - 24 Aug 2026
Abstract
Background/Objectives: Propolis is a resinous natural product rich in phenolic acids and flavonoids, recognized in ethnopharmacology for its antioxidant and anti-inflammatory properties. This study aimed to identify the most bioactive Saudi propolis extract using a bioassay-guided strategy and investigate its chemical profile [...] Read more.
Background/Objectives: Propolis is a resinous natural product rich in phenolic acids and flavonoids, recognized in ethnopharmacology for its antioxidant and anti-inflammatory properties. This study aimed to identify the most bioactive Saudi propolis extract using a bioassay-guided strategy and investigate its chemical profile and mechanistic anti-inflammatory potential. Methods: Four propolis extracts (P1–P4) collected from different regions of Saudi Arabia were evaluated for their antioxidant (DPPH and ABTS) and anti-inflammatory (COX-1 and COX-2) activities. The most active extract was profiled using liquid chromatography–mass spectrometry (LC–MS), followed by molecular docking and molecular dynamics simulations. Results: Among all samples, P3 demonstrated the strongest antioxidant activity, with IC50 values of 25.84 ± 0.96 µg/mL (DPPH) and 32.30 ± 1.20 µg/mL (ABTS), comparable to ascorbic acid (27.45 ± 1.42 and 21.22 ± 0.79, respectively). P3 also exhibited potent and selective COX-2 inhibition with an IC50 of 6.19 ± 0.21 µg/mL (relative to celecoxib, IC50 0.681 ± 0.02 as positive control). LC–MS analysis identified 26 secondary metabolites. Computational studies ranked kaempferol as forming the most conformationally stable COX-2 complex among the ligands examined, including the reference inhibitor, on the basis of molecular dynamics descriptors of pose persistence and conformational confinement. Conclusions: Saudi propolis P3 is a potent source of bioactive compounds with strong antioxidant and selective COX-2 inhibitory activity. These findings highlight its anti-inflammatory potential and suggest its value as a natural lead for developing safer therapeutics targeting inflammation-related chronic diseases. Full article
(This article belongs to the Section Drug Targeting and Design)
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32 pages, 22734 KB  
Article
Polyphenol-Rich Opuntia ficus-indica Cladodes: An Integrated Metabolomic, In Vivo and In Silico Study Supporting Their Hypolipidemic and Hepatoprotective Effects
by Abderrahmane Hadini, Abdelhay Addous, Abdellah Baraich, Mourad Bendada, Ahmed Karim, Mohammed Choukri, Imane Mokhtari, Rémy Cordazzo, Pierre Pétriacq, Souliman Amrani, Anthony Bernard, Khalid El Bekkaye, Luca Rastrelli, Maria D’Elia and Hicham Harnafi
Nutrients 2026, 18(17), 2766; https://doi.org/10.3390/nu18172766 - 24 Aug 2026
Abstract
Background: Hyperlipidemia is a major risk factor for cardiometabolic disorders, including non-alcoholic fatty liver disease (NAFLD), and is closely associated with oxidative stress. Opuntia ficus-indica (OFI) cladodes are recognized as a rich source of bioactive phytochemicals; however, the molecular mechanisms underlying their metabolic [...] Read more.
Background: Hyperlipidemia is a major risk factor for cardiometabolic disorders, including non-alcoholic fatty liver disease (NAFLD), and is closely associated with oxidative stress. Opuntia ficus-indica (OFI) cladodes are recognized as a rich source of bioactive phytochemicals; however, the molecular mechanisms underlying their metabolic benefits remain incompletely understood. Objectives: This study aimed to comprehensively evaluate the hypolipidemic and hepatoprotective potential of a polyphenol-rich O. ficus-indica cladode extract (OCE) using an integrated approach combining in vivo evaluation, untargeted metabolomics (UHPLC-Orbitrap-MS/MS), molecular docking, and ADMET prediction. Methods: Hyperlipidemic mice fed a high-fat diet (HFD) were treated with OCE, while molecular docking was performed on ten major annotated phytochemicals against twelve key proteins involved in lipid metabolism and cholesterol homeostasis, including HMGCR, FAS, PPARα, PCSK9, and NPC1L1, using simvastatin as the reference compound. Results: OCE treatment significantly improved plasma and hepatic lipid profiles, improved glucose homeostasis, and markedly reduced hepatic malondialdehyde (MDA) levels, indicating attenuation of oxidative stress. Histopathological analysis further supported a pronounced hepatoprotective effect, with a substantial reduction in hepatic steatosis. Untargeted metabolomics enabled the annotation of 102 metabolites, putatively identifying piscidic acid as the predominant phenolic constituent together with a diverse profile of flavonoids and phenolic acids. Molecular docking supported the potential contribution of these phytochemicals to the regulation of lipid metabolism through favorable interactions with multiple therapeutic targets, while ADMET prediction suggested an overall favorable pharmacokinetic and toxicity profile despite the lower intestinal permeability predicted for glycosylated derivatives. Conclusions: Overall, these findings support O. ficus-indica cladodes as a promising source of dietary bioactive compounds with potential applications in the nutritional management and prevention of hyperlipidemia and related cardiometabolic disorders. Full article
(This article belongs to the Special Issue Bioactive Ingredients in Plants Related to Human Health—2nd Edition)
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21 pages, 3986 KB  
Article
Comparative Effect of Extraction Techniques on the Phenolic Content and Antioxidant and Antigenotoxic Activities of Rubus saxatilis L.
by Aknur D. Orazbay, Assel G. Zhumina, Margarita Yu. Ishmuratova, Gayane A. Atazhanova, Yana Levaya, Serikbai K. Abilev, Olga N. Antosyuk and Anastasia K. Verbitskaya
Plants 2026, 15(17), 2568; https://doi.org/10.3390/plants15172568 - 24 Aug 2026
Abstract
Rubus saxatilis L. (Rosaceae) is used in traditional medicine in Central Kazakhstan, yet the effect of the extraction method on its phenolic profile and biological activity has not been studied systematically. Three extracts were compared: two prepared by ultrasound-assisted extraction differing [...] Read more.
Rubus saxatilis L. (Rosaceae) is used in traditional medicine in Central Kazakhstan, yet the effect of the extraction method on its phenolic profile and biological activity has not been studied systematically. Three extracts were compared: two prepared by ultrasound-assisted extraction differing only in solvent—water (WE) and 50% ethanol (UAE)—and one by microwave-assisted extraction with 50% ethanol (MAE), allowing the effect of solvent (WE vs. UAE) and of extraction technique (UAE vs. MAE) to be assessed separately. Phenolic composition was determined by HPLC-UV-ESI-MS; antioxidant activity in vitro; cytotoxicity for Artemia salina; and antigenotoxic effects using Escherichia coli K12 MG1655 lux-biosensors (pKatG::lux, pSoxS::lux, pColD::lux) and Drosophila melanogaster models. Four phenolics were identified, with gallic acid dominant in the UAE and MAE extracts and hyperoside predominant in WE, while rutin was not detected in WE. MAE showed the strongest radical-scavenging activity (DPPH, IC50 = 7.44 µg/mL), whereas WE had the highest reducing power (FRAP, EC50 = 52.97 µg/mL). All extracts were non-toxic for A. salina and induced neither oxidative stress nor the SOS response; instead, they attenuated dioxidine-induced SOS signalling by up to 57%, suggesting an antigenotoxic (DNA-protective) effect at the bacterial level. In Drosophila, extracts produced moderate extract-dependent genotoxicity: the lowest damage was observed for MAE. The extraction method governs the phenolic profile and biological activity of R. saxatilis, with MAE being most favorable. Full article
(This article belongs to the Section Phytochemistry)
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27 pages, 2803 KB  
Article
Natural Product-Based Therapeutic Potential of Fagonia arabica: Phytochemical Characterization and Biological Activities of Leaf and Seed Extracts
by Ibrahim M. Aziz, Rawan M. Alshalan and Reem M. Aljowaie
Pharmaceuticals 2026, 19(9), 1330; https://doi.org/10.3390/ph19091330 - 23 Aug 2026
Abstract
Background/Objectives: The increasing global prevalence of chronic diseases has intensified the search for potential natural therapeutic agents. Fagonia arabica is a medicinal plant widely used in traditional medicine; however, comparative information on the phytochemical composition and biological activities of its leaves and [...] Read more.
Background/Objectives: The increasing global prevalence of chronic diseases has intensified the search for potential natural therapeutic agents. Fagonia arabica is a medicinal plant widely used in traditional medicine; however, comparative information on the phytochemical composition and biological activities of its leaves and seeds remains limited. To the best of our knowledge, this study represents the first comparative investigation of the phytochemical profiles and bioactivities of methanolic leaf (FALE) and seed (FASE) extracts of F. arabica collected from Riyadh, Saudi Arabia. Methods: Methanolic extracts were analyzed by gas chromatography–mass spectrometry (GC–MS), and their total phenolic content (TPC), total flavonoid content (TFC), antioxidant, antimicrobial, anticancer, and antidiabetic activities were evaluated using standard in vitro assays. Results: GC–MS analysis identified 60 and 68 compounds in FALE and FASE, respectively, with (9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid, hexadecanoic acid, dimethyl-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-ol, and (1R,3aR,5aR,5bR,7aR,9S,11aR,11bR,13aR,13bR)-3a,5a,5b,8,8,11a-Hexamethyl-1-(prop-1-en-2-yl)-1,2,3,4,5,6,7,7a,9,10,11,11b,12,13,13a,13b-hexadecahydrocyclopenta[a]chrysen-9-ol as major constituents. FASE exhibited higher TPC and TFC values (104.13 mg GAE/g and 62.16 mg QE/g, respectively) than FALE. Both extracts demonstrated antioxidant activity, with FASE showing greater potency against DPPH and ABTS radicals (IC50 = 63.3 and 42.4 μg/mL, respectively). FASE also displayed broad-spectrum antimicrobial activity, particularly against Staphylococcus aureus (MIC = 7.81 μg/mL). Furthermore, FASE exhibited stronger concentration-dependent cytotoxicity against MCF-7 and HepG2 cells, with IC50 values of 106.8 and 89.5 μg/mL, respectively, compared with 112.5 and 103.1 μg/mL for FALE. Apoptosis induction in MCF-7 and HepG2 cells was associated with upregulation of caspase-3, caspase-8, caspase-9, and Bax, alongside downregulation of Bcl-2 and Bcl-xL. In addition, FASE exhibited potent α-amylase and α-glucosidase inhibitory activities (IC50 = 61.62 and 67.38 μg/mL, respectively), comparable to acarbose. Conclusions: These findings highlight F. arabica seed extract as a promising source of multifunctional bioactive compounds with potential pharmaceutical application. Full article
(This article belongs to the Special Issue Natural Products for Therapeutic Potential, 2nd Edition)
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34 pages, 2069 KB  
Article
Phytochemical Study and Cytotoxic Properties of Hydroalcoholic Extracts of Epilobium parviflorum Schreb.: In Silico and In Vitro Insights
by Christian Goldiș, Roxana Racoviceanu, Mihaela Jorgovan, Roxana Negrea-Ghiulai, Codruța Șoica, Alexandra Prodea, Oana Bătrîna, Gabriela Antal and Alexandra Mioc
Sci. Pharm. 2026, 94(3), 71; https://doi.org/10.3390/scipharm94030071 - 23 Aug 2026
Abstract
Epilobium parviflorum Schreb. is a medicinal plant used traditionally against inflammatory disorders whose cytotoxic potential is still incompletely revealed. The current study investigates the phytochemical composition and in vitro cytotoxic activity of four hydroalcoholic extracts prepared from the aerial parts of E. parviflorum [...] Read more.
Epilobium parviflorum Schreb. is a medicinal plant used traditionally against inflammatory disorders whose cytotoxic potential is still incompletely revealed. The current study investigates the phytochemical composition and in vitro cytotoxic activity of four hydroalcoholic extracts prepared from the aerial parts of E. parviflorum by using maceration and Soxhlet extraction. The extracts were characterized in terms of total phenolic, flavonoid and tannins composition and LC-MS was used to identify its individual polyphenols. Their biological effects were assessed against four cancer cell lines (A375 melanoma, HT-29 colorectal adenocarcinoma, PANC-1 pancreatic carcinoma and SK-OV-3 ovarian adenocarcinoma cells), while using HaCaT keratinocytes as healthy cells in order to assess selectivity. Cell viability, cytoskeletal and nuclear morphology, mitochondrial respiration and network pharmacology were further investigated. A complex phenolic profile was revealed, with hyperoside being identified as the main component in all extracts while the extraction parameters strongly influenced the recovery of various phenolic compounds. All extracts reduced cancer cell viability in a dose-dependent manner after 24 h exposure, with the most pronounced effects observed at 720 and 1000 μg/mL, while HaCaT cells were left relatively unaffected. The morphological assessment indicated nuclear condensation, fragmentation and cytoskeletal disruption following the application of extracts. Moreover, high-resolution respirometry showed reduced oxidative phosphorylation and electron transfer system capacity thus indicating that early mitochondrial dysfunction may contribute to the cytotoxic effects. Network pharmacology revealed that ERBB2, CTNNB1, HSP90AA1 and HDAC6 might act as molecular targets in melanoma. Thus, these findings support the hypothesis that E. parviflorum hydroalcoholic extracts, particularly the 40% ethanol Soxhlet extract, may serve as important sources of bioactive phytocompounds with antiproliferative and apoptotic properties. Full article
(This article belongs to the Special Issue Anticancer Potential of Natural Products)
13 pages, 297 KB  
Article
Comparative Analysis of Physicochemical Composition and Antioxidant Properties of Three Edible Mushroom Varieties
by Oluwaseun Peter Bamidele
Molecules 2026, 31(17), 2950; https://doi.org/10.3390/molecules31172950 - 23 Aug 2026
Abstract
This manuscript presents findings from the analysis of three species of Pleurotus mushrooms common in Ile-Ife, Nigeria, detailing evaluations of proximate composition, physicochemical properties, minerals, colour, phenols, and antioxidant capacity. Standard analytical procedures were used to analyse the mushroom flour samples. Moisture content [...] Read more.
This manuscript presents findings from the analysis of three species of Pleurotus mushrooms common in Ile-Ife, Nigeria, detailing evaluations of proximate composition, physicochemical properties, minerals, colour, phenols, and antioxidant capacity. Standard analytical procedures were used to analyse the mushroom flour samples. Moisture content was within the range of 9.56% (P. florida) and 11.01% (P. pulmonarius), indicative of good drying practices. Protein content among the three species was high, with that of P. ostreatus showing the highest value (26.12%), and all had low fat content (3.45–3.70%). The physicochemical analysis showed pH values between 6.12 and 6.31, indicating neutral pH, and perishability was indicated by water activity values of 0.39–0.44. P. florida had significant differences (p < 0.05) in colour analysis, with the highest lightness (L* = 75.45) and colour saturation. P. florida had the highest total phenolic content (58.91 mg GAE/g) and antioxidant activity (ABTS and DPPH: 42.21 and 46.12 µmol TE/g). Of the three species, P. florida had the highest total phenol profile, at 44.10 mg/g. Gallic acid was the predominant phenol with the highest concentration of 12.82 mg/g. The study concluded that all three common mushroom species, P. ostreatus, P. florida, and P. pulmonarius, are rich in nutrients, with P. florida standing out in bioactive compounds. Full article
25 pages, 4113 KB  
Article
Integrative Transcriptomic and Metabolomic Analyses of Time-of-Day Variation of Quality-Related Metabolites in Fresh Tea Leaves
by Liangjie Niu, Chunhui Wang, Jiayin Xie, Lin Cheng, Qiying Zhou and Wei Wang
Plants 2026, 15(17), 2558; https://doi.org/10.3390/plants15172558 - 22 Aug 2026
Abstract
Green tea quality is largely determined by the metabolite profile of fresh leaves. However, the time-of-day-dependent dynamics of these metabolites remain largely unknown in Xinyang Maojian (XYMJ), a premium Chinese green tea. In this study, we performed the first integrative transcriptomic and metabolomic [...] Read more.
Green tea quality is largely determined by the metabolite profile of fresh leaves. However, the time-of-day-dependent dynamics of these metabolites remain largely unknown in Xinyang Maojian (XYMJ), a premium Chinese green tea. In this study, we performed the first integrative transcriptomic and metabolomic analysis of Camellia sinensis cv. Xinyang 10 shoots (one bud and one leaf) sampled at 7:00, 13:00, and 18:00 under field conditions with light intensities of 19.2, 113, and 5.4 klx, respectively. We identified 525 differentially accumulated metabolites and 19,767 differentially expressed genes exhibiting distinct time-of-day-dependent patterns. Physiological measurements confirmed significant fluctuations in starch, soluble sugars, chlorophyll, relative water content, and polyphenols throughout the daytime. A key finding was a daytime carbon allocation trade-off: primary metabolism (starch biosynthesis, glycolysis, TCA cycle) peaked at 13:00, whereas secondary metabolism (flavonoids, theaflavins, phenolic acids, anthocyanins) dominated at 18:00, supported by strong negative correlations between primary and secondary metabolic modules. Chlorophyll and oligomeric catechins peaked at 7:00; theaflavins at 13:00; and starch, soluble sugars, theanine, and organic acids at 18:00. Light-responsive transcription factors (bZIP, NF-Y, HD-Zip, SPL, ARF, MADS) and other regulators (MYB, AP2/ERF, WRKY, NAC, GRAS, bHLH) exhibited time-specific expression, sequentially modulating flavonoid, caffeine, and theanine biosynthesis, along with specific gene modules including SS3/SS4 (starch synthesis), BAM3 (starch degradation), FBA1 (carbon fixation), CYP72A219 (terpenoid metabolism), and L7A (theaflavin biosynthesis). Evening-harvested leaves accumulated higher levels of theanine (umami) and soluble sugars (sweetness), whereas morning leaves were enriched in astringent catechins and flavonols. This multi-omics dissection of time-of-day-dependent metabolism in XYMJ tea provides a scientific basis for time-of-day harvesting strategies and graded processing of tea products. Full article
(This article belongs to the Special Issue Biosynthesis and Regulation of Tea Plant Specialized Metabolites)
17 pages, 657 KB  
Article
Effects of Organic Acids on Phenolic Compounds and Antioxidant Activity During the Processing of Potatoes with Colored Flesh
by Anna Pęksa, Agnieszka Tajner-Czopek, Kamila Marciniak, Anna Sokół-Łętowska, Agnieszka Nemś and Alicja Zofia Kucharska
Molecules 2026, 31(17), 2948; https://doi.org/10.3390/molecules31172948 - 22 Aug 2026
Abstract
Potatoes with colored flesh are increasingly processed in the food industry. However, establishing appropriate production parameters is challenging because anthocyanins and other polyphenols present in potatoes undergo structural transformations during processing. Therefore, this study investigated the effects of five organic acids applied during [...] Read more.
Potatoes with colored flesh are increasingly processed in the food industry. However, establishing appropriate production parameters is challenging because anthocyanins and other polyphenols present in potatoes undergo structural transformations during processing. Therefore, this study investigated the effects of five organic acids applied during the production of dehydrated potato grits on the content, profile, and stability of phenolic compounds in the final products manufactured from tubers of the red-fleshed potato cultivar Lily Rose (LR) and the purple-fleshed cultivar Double Fun (DF). The effects were assessed by analyzing the profiles, antioxidant activity, and content of the phenolic compounds in the final products. Phenolic compounds were analyzed by high-performance liquid chromatography (HPLC), while antioxidant activity was evaluated using the FRAP, DPPH, and ABTS assays. Only malic acid improved anthocyanin retention in LR potato products, while tartaric and malic acids had the greatest effect on the content of the analyzed compounds in DF potato products. Citric acid showed only a moderate stabilizing effect on anthocyanin content. Grits produced with malic and tartaric acids contained 20–67% more phenolic acids than the control and showed higher antioxidant activity. Lactic acid had an adverse effect, particularly in LR dehydrated potato grits. Depending on the potato cultivar, the effectiveness of organic acids in stabilizing anthocyanins varied. Therefore, the processing conditions for colored potatoes should be optimized for the specific cultivar. Full article
(This article belongs to the Special Issue Bioactive Compounds in Foods and Their By-Products: 2nd Edition)
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21 pages, 690 KB  
Article
Chemotypic Diversity, Antioxidant, Antimicrobial, and Antibiofilm Activities of Essential Oils from Arid-Grown Ocimum basilicum and Ocimum africanum and Their Representative Active Components
by Samah Mechmechani, Abdullah A. Shaito, Mai M. Karousa, Maria Angelica M. Rocha, Diana C. G. A. Pinto, Mohammad Al-Khater, Moneer Ali, Mohamed M. Hassona and Layal Karam
Molecules 2026, 31(17), 2940; https://doi.org/10.3390/molecules31172940 - 22 Aug 2026
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Abstract
Plants grown in arid environments can produce distinct secondary metabolite profiles as adaptive stress responses. This study evaluated the antimicrobial, antioxidant, and antibiofilm activities of essential oils (EOs) from two Ocimum species cultivated in Qatar: Ocimum basilicum L. (OB-S, sweet basil) and Ocimum [...] Read more.
Plants grown in arid environments can produce distinct secondary metabolite profiles as adaptive stress responses. This study evaluated the antimicrobial, antioxidant, and antibiofilm activities of essential oils (EOs) from two Ocimum species cultivated in Qatar: Ocimum basilicum L. (OB-S, sweet basil) and Ocimum africanum Lour. (OA-L, lemon basil). GC-MS analysis revealed distinct chemotypes: OB-S was linalool-rich (31.53% linalool and 12.91% eucalyptol), while OA-L was citral-dominant (78.34% geranial/neral). OB-S exhibited superior biological activity, showing a lower minimum inhibitory concentration against Listeria monocytogenes (MIC = 5 mg/mL) than OA-L (MIC = 10 mg/mL). Consistent with its higher total phenolic content (999.06 ± 8.30 vs. 37.77 ± 3.25 µg GAE/g EO), OB-S demonstrated significantly greater antioxidant capacity (DPPH EC50 of 162.69 ± 0.78 vs. 939.38 ± 0.68 µg/mL). Further evaluation of OB-S EO and its major constituents (linalool, eugenol, estragole, eucalyptol) against L. monocytogenes biofilms revealed that while the whole EO reduced biofilm viability at 2MIC, isolated phytocompounds were more potent. Eugenol achieved the greatest reduction (reaching up to 5 log CFU/cm2), suggesting that it may be a major contributor to OB-S EO’s antibiofilm activity. These findings highlight the distinct chemotypic and bioactive profiles of these Ocimum species cultivated under arid conditions while also demonstrating eugenol’s potential for food-safety applications as a natural food preservative. Full article
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17 pages, 5234 KB  
Article
Untargeted Metabolomics Reveals Functional Bioactive Metabolite Networks in Green Rice Milk Yogurt Enriched with Wolffia globosa
by Pongpat Kiatprasert, Sukrita Punyauppa-Path, Nonthiwat Taesuk, Sujira Maneerat, Watchara Kanchanarach, Priyapa Najomtien and Srisan Phupaboon
Life 2026, 16(8), 1385; https://doi.org/10.3390/life16081385 - 21 Aug 2026
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Abstract
This study aimed to illustrate the effects of plant-based yogurts made from bio-fermentative green rice milk yogurt (GRMY), enhanced with Wolffia globosa powder (WGP) and infused with Thai green tea. Different formulations (F1 to F4) were analyzed to assess the impact of varying [...] Read more.
This study aimed to illustrate the effects of plant-based yogurts made from bio-fermentative green rice milk yogurt (GRMY), enhanced with Wolffia globosa powder (WGP) and infused with Thai green tea. Different formulations (F1 to F4) were analyzed to assess the impact of varying weight ratios of WGP, ranging from 0% to 15%. The goal was to improve nutritional values and bioactive components. The F4 formulation of plant-based yogurt demonstrated enhanced nutritional values, including higher levels of dietary fiber, starch, protein, and fat contents, which were 42.45, 26.55, 22.48, and 2.29% DW, respectively. It was increased by bioactive compounds such as total phenolic content (52.99 mg GAE/g), total flavonoid content (60.45 mg QUE/g), and β-carotene (1.81 mg/g). Additionally, the F4 formulation exhibited the highest antioxidants in terms of DPPH activity (5.48 mg TROE/g), ABTS activity (424.15 mg TROE/g), and FRAP reducing capacity (106.35 mg TROE/g) and antidiabetic activity of α–glucosidase inhibition in IC50 at 1.41 mg/mL. The yogurts were evaluated through metabolomic network analysis as a complex bioactive food system, wherein fermentation-derived metabolites synergistically interact with tea polyphenols, amino acids, phytosterols, and carotenoids. The prevailing metabolic profiles indicate an increase in antioxidant capacity, a reduction in inflammatory burden, enhanced glucose metabolism, alterations in gut microbiota, cardiovascular protection, and neuroprotective potential. These findings suggest that the product represents a promising plant-based functional food, offering numerous health benefits. This assertion is supported by a diverse metabolite network identified through UPLC–MS/MS metabolomic research. Full article
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18 pages, 1218 KB  
Article
Rootstock Influence on the Phenolic Composition and Sensory Attributes of Vitis vinifera cv. Xinomavro Wines
by Maria Kyraleou, Stamatina Kallithraka, Artemis Stoimenou, Vasilis Mylonas, Nikolaos Theodorou and Marianthi Basalekou
Beverages 2026, 12(8), 99; https://doi.org/10.3390/beverages12080099 - 21 Aug 2026
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Abstract
Rootstock–scion interactions are recognised as key determinants of grapevine physiology and secondary metabolism, yet their role in modulating the phenolic profile and sensory typicity of cv. Xinomavro, a Greek red variety characterised by low anthocyanin content and high acidity, remains insufficiently documented. This [...] Read more.
Rootstock–scion interactions are recognised as key determinants of grapevine physiology and secondary metabolism, yet their role in modulating the phenolic profile and sensory typicity of cv. Xinomavro, a Greek red variety characterised by low anthocyanin content and high acidity, remains insufficiently documented. This study evaluated the effect of five rootstocks (110R, 161-49C, 3309C, 101-14MGt and Vitis riparia) on Xinomavro grape composition and wine quality. The vines were cultivated under identical vineyard management in an experimental vineyard in Amyntaio and the wines were produced under similar vinification conditions. Grape physicochemical parameters and their phenolic composition were determined, while wines were analysed for basic oenological parameters, phenolic composition and individual anthocyanins by HPLC. Sensory evaluation of wines was conducted by a trained panel. Rootstocks significantly affected anthocyanin accumulation, extractability and tannin distribution in grapes, and modulated wine phenolic composition, colour intensity and aromatic profile. Overall, rootstock selection emerges as an important viticultural tool to regulate phenolic composition, colour expression and sensory typicity of Xinomavro wines under evolving climatic conditions. Full article
(This article belongs to the Section Wine, Spirits and Oenological Products)
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23 pages, 2148 KB  
Article
Long-Term Metabolic Responses of Olive to Bacterial and Fungal Inoculation Differ Between Cultivars
by Sergeja Adamič Zamljen, Sara Godena, Nikola Major, Smiljana Goreta Ban, Tvrtko Karlo Kovačević, Marija Polić Pasković and Igor Pasković
Biomolecules 2026, 16(8), 1220; https://doi.org/10.3390/biom16081220 - 21 Aug 2026
Viewed by 142
Abstract
Olive leaves represent a metabolically active tissue that plays an important role in plant responses to biotic stress. The present study comprised two independent experiments investigating biochemical responses of olive leaves to bacterial and fungal challenge under controlled conditions. Changes in primary metabolites [...] Read more.
Olive leaves represent a metabolically active tissue that plays an important role in plant responses to biotic stress. The present study comprised two independent experiments investigating biochemical responses of olive leaves to bacterial and fungal challenge under controlled conditions. Changes in primary metabolites (sugars, organic acids and free amino acids), phenolic compounds and lipid peroxidation were analyzed using chromatographic and spectrophotometric methods. In the bacterial experiment, pronounced differences were observed in primary metabolism. Tryptophan concentrations ranged from approximately 50 mg kg−1 DW to more than 360 mg kg−1 DW in ‘Istarska bjelica’, while sucrose concentrations reached up to 87 g kg−1 DW, demonstrating cultivar-dependent differences in carbohydrate metabolism. Phenolic profiling showed that secoiridoids were the dominant phenolic class, with oleuropein concentrations exceeding 27 g kg−1 DW across bacterial treatments. In the fungal experiment, amino acids showed greater variability than sugars and phenolic compounds, whereas MDA concentrations ranged from approximately 190 to 300 nmol g−1 DW but did not differ significantly among pathogen treatments. Overall, the two experiments showed distinct patterns of metabolite variation associated with bacterial and fungal challenge. These findings contribute to a better understanding of cultivar-dependent metabolic responses and provide a basis for future studies of olive–microbe interactions. Full article
(This article belongs to the Special Issue Plant Secondary Metabolism Engineering and Bioactive Compounds)
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