Search Results (61)

Solanum aculeatissimum is a herbaceous to semi-woody perennial plant native to the Brazilian ecosystem. It has naturalized extensively in southwestern China, posing significant threats to local biodiversity. This study systematically screened and integrated 100 distribution records from authoritative databases, including the Chinese Virtual Plant Specimen Database, the Global Biodiversity Information Facility, and Chinese Natural Museums. Additionally, 23 environmental variables were incorporated, comprising 19 bioclimatic factors from the World Climate Dataset, 3 topographic indicators, and the Human Footprint Index. The objectives of this research are as follows: (1) to simulate the plant’s current and future distribution (2050s/2070s) under CMIP6 scenarios (SSP1-2.6, SSP2-4.5, and SSP5-8.5); (2) to quantify changes in the distribution range; and (3) to determine the migration trajectory using MaxEnt 3.4.4 software. The findings reveal that human pressure (contributing 79.7%) and isothermality (bioclimatic factor 3: 10.1%) are the primary driving forces shaping its distribution. The core suitable habitats are predominantly concentrated in the provinces of Yunnan, Guizhou, and Sichuan. By 2070, the distribution center shifts northeastward to Qujing City. Under the SSP5-8.5 scenario, the invasion front extends into southern Tibet, while retreat occurs in the lowlands of Honghe Prefecture. This study underscores the synergistic effects of socioeconomic development pathways and bioclimatic thresholds on invasive species’ biogeographical patterns, providing a robust predictive framework for adaptive management strategies. Full article

The aromatic C₁₃ apocarotenoid β-ionone is a high-value natural-flavor and -fragrance compound derived from the oxidative cleavage of carotenoids. Carotenoid cleavage dioxygenases (CCDs) play a pivotal role in the biosynthesis of volatile apocarotenoids, particularly β-ionone. In this study, we report the identification, cloning, and functional characterization of two CCD1 homologs: OeCCD1 from Olea europaea and InCCD1 from Ipomoea nil. These two species, which, respectively, represent a woody perennial and a herbaceous annual, were selected to explore the potential functional divergence of CCD1 enzymes across different plant growth forms. These CCD1 genes were synthesized using codon optimization for Escherichia coli expression, followed by heterologous expression and purification using a GST-fusion system. In vitro assays confirmed that both enzymes cleave β-carotene at the 9,10 (9′,10′) double bond to yield β-ionone, but only OeCCD1 exhibits detectable activity on zeaxanthin; InCCD1 shows no in vitro cleavage of zeaxanthin. Kinetic characterization using β-apo-8′-carotenal as substrate revealed, for OeCCD1, a K_m of 0.82 mM, V_max of 2.30 U/mg (k_cat = 3.35 s⁻¹), and k_cat/K_m of 4.09 mM⁻¹·s⁻¹, whereas InCCD1 displayed K_m = 0.69 mM, V_max = 1.22 U/mg (k_cat = 1.82 s⁻¹), and k_cat/K_m = 2.64 mM⁻¹·s⁻¹. The optimization of expression parameters, as well as the systematic evaluation of temperature, pH, solvent, and metal ion effects, provided further insights into the stability and functional diversity within the plant CCD1 family. Overall, these findings offer promising enzymatic tools for the sustainable production of β-ionone and related apocarotenoids in engineered microbial cell factories. Full article

Fruits are increasingly recognized as an important part of a healthy diet. Fruit crops represent a wide range of woody perennial species grown in orchards. Water availability is a primary environmental factor limiting fruit crop growth and productivity. Erratic rainfall patterns and increased temperatures due to climate change are likely to increase the duration of droughts. This review aims to highlight the different mechanisms by which fruit crops respond to water stress deficits. Emphasis is placed on physiological, genetic and epigenetic determinants of stress response in fruit crops. These findings can contribute to a deeper understanding of the underlying effects of drought. We also describe new research opportunities made possible by the increasing availability of population-level genomic data from the field, including genome-wide association studies (GWAS) and high-throughput phenotyping. Full article

Bud paradormancy has been widely studied in perennial deciduous woody species, but little attention has been paid to paradormancy set and release in perennial evergreen tree species. Here, shoot bud paradormancy in Camellia sinensis cv. Huangdan was studied by untargeted metabolomics. We found that after removing the axillary floral buds for one day, the paradormancy of the axillary shoot buds was released. The paradormant shoot buds had lower glucose-1-phosphate, fructose, and D-(-)-tagatofuranose content but higher trehalose, raffinose, galactinol, and α-D-xylopyranose content. Meanwhile, high levels of asparagine were accumulated. Flavonoids were differentially accumulated, and higher levels of three flavone glycosides (C-diglucosylapigenin, apigenin 6-C-glucoside 8-C-arabinoside, and prunin) and four proanthocyanidins (Procyanidin trimer isomer 1, Galloylprocyanidin dimer, Procyanidin trimer isomer 3, and Galloylated trimeric proanthocyanidin) were accumulated in paradormant shoot buds. During the paradormancy-to-growth transition, all these metabolites were reversed. These data suggest that the reconfiguration of carbon, nitrogen, and flavonoid metabolism could be an important aspect for the paradormancy set and release of tea axillary shoot buds. This study provided novel insights into shoot bud paradormancy set and release in a perennial evergreen tree species. Full article

Invasive species are a major driver of environmental change and pose a significPant threat to native biodiversity due to their ability to invade and establish themselves in natural or semi-natural ecosystems. This study analyzed the presence, abundance, and distribution of invasive alien plant species in a Mediterranean urban area, the municipality of Córdoba (Andalusia region, southern Spain). It includes an important historic city center, urbanized areas but also peri-urban natural and semi-natural sites around. A detailed review of bibliography and computerized botanical databases was conducted prior to an extensive fieldwork and GIS analysis carried out during 2021, 2022, and 2023. Our research identified 227 populations of 17 invasive plant species from 10 different families. These species represent 35% of the invasive plant species reported in the Andalusia region and 27% of those reported in Spain. In total, 53% of the species were introduced from America, especially South America, but no alien invasive species from other European regions were detected. The highest concentrations were found in ruderal areas, followed by abandoned fields, but also in urbanized areas, including the UNESCO World Heritage historic city center. Seven invasive herbaceous species were identified (perennial herbs), compared to 10 invasive tree species, with phanerophytes being the most abundant life form. This likely reflects the predominant use of alien woody species for ornamental and reforestation purposes, as well as the greater resilience of woody and perennial species to the increasingly warm and dry conditions of the Mediterranean climate—a phenomenon exacerbated in recent years by climate change. Our findings suggest that the use of non-native species as ornamentals is the primary driver of the establishment, spread, and ecological impact of invasive plants in the study area. This study provides valuable insights into the current situation and the potential future trajectory of invasive species, facilitating the development of management strategies and restoration efforts to address the growing issue of biological invasions in the Mediterranean region. Full article

The increasing drought caused by climate change makes it difficult for rural areas reliant on pasture-based livestock farming to sustain their agricultural practices. Blackberries, a spreading species, have been selected as the material for this study due to their perennial shrub nature and their tolerance to adverse environmental conditions. Türkiye, the gene center for blackberries, is part of the Mediterranean belt and is located at the intersection of three flora regions—Mediterranean, Euro-Siberian, and Irano-Turanian. This study aims to determine the forage value of the Rubus species and other shrub/tree species (Quercus, Pistacia, and Rosa) collected and identified from these flora regions. Furthermore, a linear regression analysis established a relationship between the forage values and the SPEI, a drought index, considering the combined effects of rainfall and temperature in the collection regions. Among the Rubus species, the highest organic matter content (887.8 g kg⁻¹) was obtained from R. pruinosus. In comparison, the highest protein content (240.1 g kg⁻¹) was found in cultivated blackberries in the Euro-Siberian flora region. P. lentiscus had the highest Ca content (14.4 g kg⁻¹) and offered feed at the “Prime” level with 154 of RFV. The SPEI explained 87% of the variation in fructan, 89% in Mg, and 92% in ADF. Due to the perennial nature of the species studied, a strong relationship was found between their growth and forage values over a 48-month time scale using the SPEI. Consequently, the equations related to ADF, Mg, and fructan content obtained in this study can be recommended for woody species. Full article

The presence of weeds and changes in temperature and precipitation due to global climate change can negatively affect the growth, development, and adaptation of poplars to new places. Experiments were conducted at the Experimental Estate of the Institute of Lowland Forestry and Environment to test glyphosate’s efficacy and phytotoxicity and to assess the impact of glyphosate on physiological parameters in different stages of poplar plantations. A test with glyphosate was set up by a random block system with four replications at three localities, each characterized by different physical soil properties. Glyphosate efficacy was evaluated after 15 and 30 days, while phytotoxicity was evaluated according to the EWRC scale. Net photosynthesis (A), stomatal conductance (gs), transpiration rate (E), and intercellular CO₂ concentration (Ci) were measured, and water use efficiency (WUE) was computed. Annual and perennial broadleaf weeds, grasses, and woody shrubs and bushes were identified. The dominant weed species across all poplar plantations were Solidago gigantea L., Solidago speciosa L., and Poa pratensis L. Glyphosate was highly effective against the major weed species, with the total efficacy ranging from 94.29 to 97.67%. The results showed significant differences in all observed gas exchange parameters, except for transpiration rate (E), between the different-aged poplar plantations. The younger poplars showed lower gas exchange rates in the treatment under the environmental conditions of the studied sites. Weed suppression resulted in altered microhabitats for poplar development at various ages, causing variation in the physiological parameters compared to the control. Full article

Species of the genus Colletotrichum are among the most important plant pathogens globally, as they are capable of infecting many hosts—apple (Malus spp.) and other fruit and woody plant species—but also vegetable crops, cereals, legumes, and other annual and perennial herbaceous plants. The apple (Malus spp.) is attacked by various species from the genus Colletotrichum, whereby 27 different species from this genus have been described as the causative agents of apple bitter rot (ABR) and 15 as the cause of Glomerella leaf spot (GLS). These species generally belong to one of three species complexes: Colletotrichum acutatum, Colletotrichum gloeosporioides, and Colletotrichum boninense. The largest number of apple pathogens of the genus Colletotrichum belong to the species complex C. acutatum and C. gloeosporioides. However, further data on these species and the interactions between the species complexes of the genus Colletotrichum that cause these two apple diseases is needed for the development of effective control measures, thus ensuring successful and profitable apple cultivation. To contribute to this endeavor, a comprehensive review of the causative agents of ABR and GLS from the genus Colletotrichum is provided. In addition to presenting the species’ current names, distribution, economic significance, and the symptoms they cause in apple, their development cycle, epidemiology, and molecular detection strategies are described, with a particular emphasis on control measures. Full article

The advent of Clustered Regularly Interspaced Palindromic Repeat (CRISPR)/CRISPR-associated (Cas) proteins as a revolutionary innovation in genome editing has greatly promoted targeted modification and trait improvement in most plant species. For grapevine (Vitis vinifera L.), a perennial woody plant species, CRISPR/Cas genome editing is an extremely promising technique for genetic improvement in a short period. Advances in grapevine genome editing have been achieved by using CRISPR technology in recent years, which promises to accelerate trait improvement in grapevine. In this review, we describe the development and advances in CRISPR/Cas9 and its orthologs and variants. We summarize the applications of genome editing in grapevine and discuss the challenges facing grapevine genome editing as well as the possible strategies that could be used to improve genome editing in grapevine. In addition, we outline future perspectives for grapevine genome editing in a model system, precise genome editing, accelerated trait improvement, and transgene-free genome editing. We believe that CRISPR/Cas will play a more important role in grapevine genome editing, and an exciting and bright future is expected in this economically significant species. Full article

Advances in cell fusion technology have propelled breeding into the realm of somatic hybridization, enabling the transfer of genetic material independent of sexual reproduction. This has facilitated genome recombination both within and between species. Despite its use in plant breeding for over fifty years, somatic hybridization has been limited by cumbersome procedures, such as protoplast isolation, hybridized-cell selection and cultivation, and regeneration, particularly in woody perennial species that are difficult to regenerate. This review summarizes the development of somatic hybridization, explores the challenges and solutions associated with cell fusion technology in woody perennials, and outlines the process of protoplast regeneration. Recent advancements in genome editing and plant cell regeneration present new opportunities for applying somatic hybridization in breeding. We offer a perspective on integrating these emerging technologies to enhance somatic hybridization in woody perennial plants. Full article

Transgenic technology is a potent tool for verifying gene functions, and poplar serves as a model system for genetically transforming perennial woody plants. However, the current poplar genetic transformation system is limited to a few genotypes. In this study, we developed an efficient transformation system based on the Agrobacterium-mediated transformation of Populus wulianensis, a rare and endangered tree species endemic to Shandong Province. Aseptic seedlings of P. wulianensis were used as experimental materials, and the optimal medium for inducing adventitious buds was explored as 1/2(NH₄NO₃) MS + 0.05 mg/L naphthalene acetic acid (NAA) + 0.5 mg/L 6-benzylaminopurine (6-BA), resulting in up to 35 adventitious buds. The selection resistance critical pressure of 300 mg/L for timentin can effectively inhibit the growth of Agrobacterium while promoting the induction of adventitious buds in leaves. The critical screening pressure for kanamycin for producing resistant adventitious buds and inducing resistant rooting seedlings was 100 mg/L. We optimized several independent factors, which significantly enhanced the efficiency of genetic transformation. The leaves were infected with Agrobacterium suspension diluted twice by adding 100 μmol/L acetylsyringone (β-AS) (OD₆₀₀ = 0.6) for 15 min, followed by co-culture in the dark for 3 d. Using this improved transformation system, we obtained transgenic P. wulianensis clones overexpressing the enhanced green fluorescent protein (EGFP) gene through direct organogenesis. Among the 112 resistant buds obtained, 17 developed resistant rooting in seedlings. Eight positive plants were identified through DNA, RNA, and protein level analyses, with a positivity rate of 47.06%. This study provides a foundation for developing and utilizing P. wulianensis germplasm resources and lays the groundwork for resource improvement. Full article

Landraces and indigenous varieties comprise valuable sources of crop species diversity. Their utilization in plant breeding may lead to increased yield and enhanced quality traits, as well as resilience to various abiotic and biotic stresses. Recently, new approaches based on the rapid advancement of genomic technologies such as deciphering of pangenomes, multi-omics tools, marker-assisted selection (MAS), genome-wide association studies (GWAS), and CRISPR/Cas9 gene editing greatly facilitated the exploitation of landraces in modern plant breeding. In this paper, we present a comprehensive overview of the implementation of new genomic technologies and highlight their importance in pinpointing the genetic basis of desirable traits in landraces and indigenous varieties of annual, perennial herbaceous, and woody crop species cultivated in the Mediterranean region. The need for further employment of advanced -omic technologies to unravel the full potential of landraces and indigenous varieties underutilized genetic diversity is also indicated. Ultimately, the large amount of genomic data emerging from the investigation of landraces and indigenous varieties reveals their potential as a source of valuable genes and traits for breeding. The role of landraces and indigenous varieties in mitigating the ongoing risks posed by climate change in agriculture and food security is also highlighted. Full article

The species Prunus mume consists of uniquely aromatic woody perennials with large amounts of free aromatic substances in the flower cells. Uridine diphosphate glycosyltransferase (UGT) modifies these free aromatic substances into water-soluble glycoside-bound volatiles (GBVs) which play an important role in regulating the use of volatiles by plants for information exchange, defense, and stress tolerance. To investigate the changes in the glycosidic state of aromatic substances during the flowering period of P. mume and discern the location and expression of glycoside synthesis genes, we extracted and enzymatically hydrolyzed GBVs of P. mume and then utilized gas chromatography–mass spectrometry (GC–MS) to characterize and analyze the types and contents of GBV glycosides. Further, we identified and classified the members of the UGT gene family of P. mume using the bioinformatic method and analyzed the correlation between the expression of the UGT family genes in P. mume and the changes in glycosidic content. The results showed that the benzenoids were the main aromatic substance that was glycosylated during flowering in P. mume and that glycosidic benzaldehyde was the most prevalent compound in different flower parts and at different flowering stages. The titer of glycoside benzaldehyde gradually increased during the bud stage and reached the highest level at the big bud stage (999.6 μg·g⁻¹). Significantly, titers of glycoside benzaldehyde significantly decreased and stabilized after flowering while the level of free benzaldehyde, in contrast, significantly increased and then reached a plateau after the flowering process was completed. A total of 155 UGT family genes were identified in the P. mume genome, which were divided into 13 subfamilies (A–E, G–N); according to the classification of Arabidopsis thaliana UGT gene subfamilies, the L subfamily contains 17 genes. The transcriptome analysis showed that PmUGTL9 and PmUGTL13 were highly expressed in the bud stage and were strongly correlated with the content of the glycosidic form of benzaldehyde at all stages of flowering. This study provides a theoretical basis to elucidate the function of UGT family genes in P. mume during flower development, to explore the mechanism of the storage and transportation of aromatic compounds in flower tissues, and to exploit industrial applications of aromatic products from P. mume. Full article

Quercus alba L., also known as white oak, eastern white oak, or American white oak, is a quintessential North American species within the white oak section (Quercus) of the genus Quercus, subgenus Quercus. This species plays a vital role as a keystone species in eastern North American forests and plays a significant role in local and regional economies. As a long-lived woody perennial covering an extensive natural range, Q. alba’s biology is shaped by a myriad of adaptations accumulated throughout its natural history. Populations of Q. alba are crucial repositories of genetic, genomic, and evolutionary insights, capturing the essence of successful historical adaptations and ongoing responses to contemporary environmental challenges in the Anthropocene. This intersection offers an exceptional opportunity to integrate genomic knowledge with the discovery of climate-relevant traits, advancing tree improvement, forest ecology, and forest management strategies. This review provides a comprehensive examination of the current understanding of Q. alba’s biology, considering past, present, and future research perspectives. It encompasses aspects such as distribution, phylogeny, population structure, key adaptive traits to cyclical environmental conditions (including water use, reproduction, propagation, and growth), as well as the species’ resilience to biotic and abiotic stressors. Additionally, this review highlights the state-of-the-art research resources available for the Quercus genus, including Q. alba, showcasing developments in genetics, genomics, biotechnology, and phenomics tools. This overview lays the groundwork for exploring and elucidating the principles of longevity in plants, positioning Q. alba as an emerging model tree species, ideally suited for investigating the biology of climate-relevant traits. Full article

Woody and non-woody plant species conservation is one of the ecosystem services provided by agroforestry (AF) systems across the agricultural landscapes. Little attention has been paid to assessing the conservation of plant diversity in AF systems. This study was, thus, aimed at investigating plant species diversity, structure, and composition of three AF systems in Gedeo zone of south-eastern rift–valley agricultural landscape of Ethiopia. The study was conducted in three agroforestry systems, namely, enset based, coffee–enset based (C–E based AF), and coffee–fruit trees–enset based (C–Ft–E based AF) agroforestry systems. Twenty farms representative of each AF system were randomly selected, and inventory of the floristic diversity was employed in a 10 m × 10 m sample plot per farm. A total of 52 perennial woody and non-woody plant species belonging to 30 families were recorded. Of all species identified, 33 (63.5%) were native, of which two species, namely Millettia ferruginea (Hochst.) Baker and Erythrina brucei Schweinf., were registered as endemic. The highest proportion of native species was recorded in enset based AF (93.3%), and the least were in C–Ft–E based AF (59%). According to the IUCN Red List and local criteria, 13 species were recorded as being of interest for conservation in all AF systems. The woody species Prunus africana was identified as both vulnerable by IUCN Red List and rare for 25% of species that least occur. The Shannon diversity index and richness showed that C–Ft–E based AF systems were significantly different from the two remaining AF systems. However, the species abundance and evenness did not show significant differences between the three AF systems. In general, retaining such numbers of woody and non-woody perennial plant species richness under the AF systems of the present study underlines their potential for biodiversity conservation. Full article