Search Results (2,036)

Metabolic changes are often described as drivers of plant development even when the evidence establishes only association or a permissive requirement. This review separates biological role from causal status and evaluates claims across seven dimensions: association, necessity, localization, transport, rescue and mediation, sufficiency, and quantitative-threshold testing. We apply a when–where–how framework to four cases. Perturbations of T6P, SnRK1, and TOR support T6P-dependent kinase regulation as a mediator of lateral-root development and are consistent with a context-dependent candidate gate, but its window and threshold remain unresolved. Circadian regulation of AHA3 and SUC2 by CCA1 provides the most complete chain, combining cell-specific perturbation, transport, and rescue. The OsARF18–OsARF2–OsSUT1 pathway supports sucrose transport as a mediator of rice fertility, although receiving-cell necessity and quantitative restoration remain unresolved. H⁺-ATPase perturbations identify apoplastic pH as a proximal mediator of Arabidopsis hypocotyl and cotton-fiber elongation, with context-dependent optima rather than a shared threshold. Nutrient and redox regulation, specialized metabolism, stress, and senescence provide boundary comparisons. Causal confidence depends on claim-matched evidence for responding cells and developmental windows and, where relevant, transport routes, mechanisms, and whole-plant trade-offs. The framework can guide AI-assisted breeding by prioritizing genotype-, stage-, and tissue-specific interventions for prospective perturbation and rescue. Full article

Background: Low maternal folate status is associated with placental dysfunction and adverse pregnancy outcomes; however, the mechanisms linking reduced folate availability to altered placental function remain incompletely understood. We investigated whether folate deficiency directly alters trophoblast function and microRNA (miRNA) expression, and whether folate-responsive miRNAs mediate these functional changes. Methods and Results: Human placental villous explants, BeWo choriocarcinoma cells, and primary human cytotrophoblasts were cultured under physiological or folate-deficient conditions to assess the direct impact of reduced folate availability. Although intracellular folate depletion was achieved in all models, only primary cytotrophoblasts reproduced functional changes consistent with those observed in placentas from folate-deficient pregnancies, exhibiting increased apoptosis and reduced system A amino acid transport. Of sixteen miRNAs previously associated with low maternal folate status, miR-30e-3p and miR-34b-5p were significantly reduced in trophoblast following folate depletion. Targeted inhibition of either miRNA did not alter apoptosis or system A activity. Pathway analysis of differentially expressed genes following miRNA inhibition identified processes related to cytoskeletal organisation, cell adhesion, PI3K/AKT and MAPK signalling. Conclusions: Folate deficiency directly impairs trophoblast survival, amino acid transport, and miRNA expression in primary trophoblasts. Our findings demonstrate that only a subset of folate-associated placental miRNAs respond directly to folate depletion and that inhibition of individual folate-responsive miRNAs is insufficient to reproduce the trophoblast phenotype. These results indicate that trophoblast adaptation to reduced folate availability is likely mediated through coordinated nutrient-sensitive regulatory networks rather than individual miRNAs acting in isolation. Full article

Feed efficiency traits are increasingly important in pig production for improving profitability and environmental sustainability. Understanding their genetic basis is crucial for uncovering underlying biological mechanisms and informing selection strategies. In this study, we analyzed residual feed intake (RFI), feed conversion ratio (FCR), and average daily feed intake (ADFI) in 201 animals. Three separate Bayesian GWASs were conducted using 29,844 SNPs in a case–control design, with the lowest and highest 15% of the phenotypic distribution selected as controls and cases (N = 30 per group), respectively, for each trait. The results confirmed the polygenic nature of the traits, identifying 4 SNPs for RFI on Sus scrofa chromosomes (SSC) 3, 13, and 15 with high posterior probability for the direction of their effects; 4 SNPs for FCR on SSC 8, 14, and 17; and 8 SNPs for ADFI on SSC 1, 2, 6, 8, and 11. A candidate gene search identified 41 potential genes involved in diverse biological processes, including feed efficiency, intestinal development, tissue remodeling and integrity, nutrient transport and absorption, metabolic homeostasis, cellular signaling, energy sensing, and neurological regulation. These genes formed a highly interconnected network, highlighting the complexity of feed efficiency and the interplay among multiple physiological, metabolic, and regulatory pathways. Full article

Glucose transport across biological membranes in mammals depends primarily on two transporter families: the facilitative glucose transporters of the SLC2 family and the sodium-dependent cotransporters of the SLC5 family. Together, these proteins mediate tissue-specific glucose uptake, epithelial absorption and reabsorption, nutrient sensing, and adaptive responses to metabolic stress. This review summarizes current knowledge of transporter classification, structural mechanism, tissue distribution, intracellular trafficking, and disease associations, with emphasis on GLUT1, GLUT2, GLUT3, GLUT4, SGLT1, and SGLT2. It also discusses less well-characterized members of the extended GLUT family, the therapeutic implications of SGLT inhibition, and unresolved questions regarding transporter specificity. Furthermore, the review integrates emerging evidence on CAR-T cell engineering, Alport syndrome, lupus nephritis, erythropoietic responses, and the reduction in dementia risk associated with transporter modulation. Full article

To explore the effects of legume intercropping on soil nitrogen (N) and phosphorus (P) cycling processes in mulberry plantations during the winter fallow period, three treatments were set up: control (no intercropping, CK), single-legume intercropping (T1: Medicago polymorpha), and mixed-legume intercropping (T2: Medicago polymorpha + Astragalus sinicus). The variations in soil available nutrients, enzyme activities, microbial community structure, and functional gene abundances were investigated, with a focus on the influence of spatial heterogeneity (middle of inter-row as position A, and mulberry-adjacent as position B). Compared with CK, both T1 and T2 significantly altered soil microbial community composition and enhanced β-diversity (R² = 0.747, p < 0.001), and these effects were more pronounced at position A. For soil N cycling, T1 and T2 reduced available N content especially at position B; however, T2 significantly increased urease activity, while T1 decreased urease activity at position A. Both treatments elevated the abundances of N-cycling functional genes (e.g., glnA, ureC, nifD) and symbiotic nitrogen-fixing rhizobia, with T1 increasing Bradyrhizobium and T2 increasing Sinorhizobium. For soil P cycling, T1 and T2 enhanced phosphatase activity to promote organic P conversion; T1 strengthened the entire P metabolic chain by upregulating multiple P-related functional genes, while T2 specifically increased the abundance of the organic P transport gene ugpb. Structural equation modeling showed that soil microbial Shannon diversity promoted the relative abundances of N-cycling and P-cycling functional genes, and cascading pathways among nutrient-cycling genes and enzyme activities governed soil available N and P. The distinct effects of T1 and T2 highlight the importance of optimizing intercropping patterns, and spatial heterogeneity should be considered in agronomic effect evaluation. Leguminous green manure intercropping should be encouraged in mulberry plantations to boost soil nutrient-cycling processes driven by microorganisms. Full article

Podocytes and their foot processes form a functional layer of the glomerular filtration barrier. Due to their unique morphology and function, podocytes employ distinct nutrient pathways to maintain the bioenergetic balance, with lactate being one of several available energy substrates. Enhanced lactate intake modulates the redox state of the cell by increasing mitochondrial respiration and reactive oxygen species production. Monocarboxylate transporter 1 (MCT1) is the primary lactate transporter, and alterations in its surface expression may contribute to the regulation of lactate uptake in podocytes. Beyond its metabolic role, lactate also acts as a crucial signaling molecule by binding to G-protein-coupled receptor 81 (GPR81), mediating a wide range of physiological effects through the inhibition of protein kinase A (PKA). The present study investigated novel regulatory mechanisms of MCT1 internalization, which depend on GPR81 signaling and PKA activity in primary rat podocytes, through the biotinylation assay. Surprisingly, both PKA inhibition (with H89 and PKI 14–22) and activation (with 8-bromo-cAMP and H₂O₂) increased MCT1 internalization. GPR81 was also found to regulate MCT1 membrane trafficking, likely through the modulation of PKA activity but also potentially through PKA-independent mechanism. Additionally, general dynamic changes in endocytic activity were detected under the present conditions with pHrodo-dextran fluorescence analysis. These results suggest that the modulation of PKA activity and GPR81 signaling may regulate lactate transport via MCT1, thereby ensuring its proper metabolic function in podocytes. Full article

Background: Peganum harmala L. stem ethanolic extract (PHL) has been scarcely evaluated as a ruminant feed component. We evaluated its effects on serum inflammatory and antioxidant biomarkers and duodenal and hepatic molecular responses in Hu sheep. Methods: Twelve male Hu sheep, approximately 120 days old, were randomly assigned to a control group or a PHL treatment group (n = 6 per group). After a 7-day adaptation period, the PHL group received 3 g/head/day of PHL (total flavonoid content: 65.7 mg rutin equivalents (RE)/g; approximately 197.1 mg RE/head/day) for 50 days. Serum markers, duodenal untargeted liquid chromatography–mass spectrometry (LC–MS) metabolomics, liver RNA sequencing, and alternative splicing were analyzed. Results: Serum interleukin-6 and malondialdehyde were lower, whereas interleukin-4 and glutathione peroxidase were higher, in the PHL group than in the control group (p < 0.05). Using variable importance in projection ≥ 1, fold change ≥ 1.2 or ≤0.83, and unadjusted p < 0.05 as screening criteria, 479 LC–MS features met these nominal screening criteria, of which 81 had database annotations. Following Benjamini–Hochberg correction, only two features remained significant (q < 0.05); however, only one was successfully annotated, rendering the pathway analysis exploratory. Liver RNA sequencing identified 279 differentially expressed genes (absolute log₂FC ≥ 1 and q ≤ 0.001) and 104 skipped-exon events (false discovery rate < 0.05). Functional enrichment analysis highlighted annotations related to bile secretion, ATP-binding cassette transport, nutrient metabolism, and glutathione metabolism. Conclusions: PHL supplementation was associated with selective changes in serum inflammatory and antioxidant biomarkers, accompanied by hepatic molecular responses. The duodenal metabolomic findings remain exploratory, and dose–response studies incorporating alkaloid quantification and targeted molecular validation are required before practical application can be considered. Full article

Climate change is increasingly affecting freshwater ecosystems across Northern Europe, yet the responses of inland waters differ according to regional climatic and environmental conditions. Latvia, located within the boreo-nemoral transition zone, provides an important case for understanding these responses. This review synthesises published evidence on climate-driven changes in Latvian inland surface waters by integrating information on climatic trends, hydrological processes, hydrochemical responses and freshwater biota. The available evidence indicates that increasing air temperature, changing precipitation patterns and more frequent hydrological extremes have altered river discharge, ice regimes, water temperature and lake processes. These hydrological changes generate cascading effects on nutrient transport, dissolved organic matter and water quality, ultimately influencing primary production, community composition, species redistribution and fish communities. The review identifies hydrology as the principal mechanism linking climatic forcing with hydrochemical and biological responses. Although the overall direction of change is consistent with observations across Northern Europe, local catchment characteristics and multiple stressors modify ecosystem responses in Latvia. The synthesis also identifies major knowledge gaps regarding ecosystem-scale processes, ecological thresholds and long-term integrated monitoring. Addressing these gaps will improve understanding of climate-driven changes in Latvian inland waters and strengthen the scientific basis for adaptive freshwater management in Latvia and comparable northern European regions. Full article

One of the most common dynamic phenomena occurring in surface waters is the transport of soluble and insoluble contaminants from various sources, such as industry and agriculture. A key concern associated with this transport is the rate at which contaminants migrate downstream to a point of interest, as well as their overall impact. In order to characterize the transport of contaminants in a body of surface water (in this case, a river), this study applied a one-dimensional advection–dispersion model that incorporated transient storage effects. This enabled the characterization of nutrient transport considering varying flow velocities along the river’s course. Adopting a more comprehensive, systemic approach enables a more holistic environmental application and facilitates parameterization of a considerably larger river than in previous case studies. The model’s innovation lies in using routinely monitored water quality constituents to evaluate their ability to inform the characterization of mixing conditions and solute transport in surface water streams. Its dynamic nature provides a reasonable approximation of the real system’s behavior over time. Finally, for management purposes, the proposed model can be replicated without extensive changes to its fundamental structure. Full article

Sulfur is an essential nutrient involved in plant growth, redox regulation, and responses to environmental stresses. Sulfate transporters (SULTRs) control sulfate uptake and distribution, thereby affecting sulfur availability for metabolic processes and stress adaptation. However, the characteristics and stress-responsive functions of SULTRs in the halophyte Sesuvium portulacastrum remain unclear. In this study, we identified and characterized the SULTR family in S. portulacastrum through phylogenetic analysis, gene structure comparison, conserved motif analysis, promoter characterization, synteny analysis, and expression profiling. A total of 22 SpSULTRs were identified and classified into three subfamilies. Most SpSULTRs contained conserved Sulfate_transp and STAS domains and were predicted to localize to the plasma membrane. Transcriptome analysis combined with qRT-PCR validation revealed that SpSULTRs displayed diverse tissue-specific expression patterns under salt, cadmium, and copper stresses. Of these, SpSULTR3;1 and SpSULTR3;2 showed strong responses to salt stress and were mainly expressed in leaves. Protein interaction predictions suggested that these two transporters may be associated with sulfur assimilation, antioxidant metabolism, and stress-related pathways. These results reveal the structural diversification and stress-responsive characteristics of the SULTR family in S. portulacastrum and provide a basis for further investigation of sulfur transport mechanisms underlying halophyte adaptation. Full article

Coastal sandy ecosystems face compounded abiotic stresses, including nutrient-poor soils, strong winds, and salt spray, making vegetation restoration highly challenging. Plant functional traits are key indicators of adaptive strategies under environmental stress, yet systematic studies on leaf, twig, and root functional traits of bamboo stands under different silvicultural regimes in coastal sandy land remain scarce. This study examined six stand types on Dongshan Island, Fujian Province: monospecific stands of Bambusa oldhamii Munro, Phyllostachys nidularia f. farcata Wen, and Bambusa tuldoides ‘Swolleninternode’, and their corresponding mixed stands with Casuarina equisetifolia L. (bamboo-to-C. equisetifolia ratio 7:3). Eighteen morphological and structural indices spanning three organ categories, leaf morphology (leaf area, specific leaf area [SLA], leaf tissue density [LTD], etc.), twig structure (wood density, dry matter content, etc.), and root morphology (specific root length [SRL], specific root surface area [SRA], root tissue density [RTD], etc.), were measured and analysed using Pearson correlation and principal component analysis (PCA). Results: (1) Coefficients of variation (CV) for leaf and twig traits ranged from 11.29% to 74.61%; leaf area (CV = 74.61%) and twig wood density (CV = 71.91%) were most variable, indicating high phenotypic plasticity of bamboo in coastal sandy environments. (2) Twig wood density in monospecific stands of B. oldhamii (0.346 g cm⁻³) was significantly higher than in all other stands (p < 0.05), reflecting a conservative water-transport strategy; mixed stands of B. oldhamii had significantly higher SRL and SRA than other stands (p < 0.05), indicating stronger root resource-acquisition capacity. (3) PCA revealed that leaf area, leaf volume, SLA, LTD, SRL, average root diameter, total root volume, total root surface area, and twig wood density (TWD) were the key traits distinguishing stands under different silvicultural regimes; monospecific stands scored higher overall than mixed stands, reflecting superior leaf, twig, and root functional coordination. Different silvicultural regimes significantly shape the functional adaptive strategies of bamboo in coastal sandy land. Bamboo plants integrate leaf, twig, and root traits in a coordinated, resource-conservative manner to withstand coastal stresses. These findings provide a theoretical basis for bamboo species selection and mixed-stand configuration in coastal shelterbelt management. Full article

Exploring plant nutrient allocation and stoichiometry is critical to understanding the adaptive strategies of endangered trees in heterogeneous habitats. This study determined the concentrations of carbon (C), nitrogen (N), phosphorus (P), and potassium (K) in seven organs (leaves, current-year twigs, perennial branches, phloem, xylem, transport roots, and absorptive roots) of Parrotia subaequalis from eight wild populations in the Dabie Mountains and then analyzed the stoichiometric characteristics, chemical plasticity, and allometric relationships of these elements among organs. The concentrations of C, N, P, and K ranged from 416.31–513.61, 4.74–12.99, 0.74–12.89, and 2.62–10.34 mg g⁻¹, respectively. Belowground organs had significantly higher C:P, N:P, and N:K ratios than aboveground ones (by 72.83%–740.30%). Perennial organs (xylem, phloem, perennial branches) showed higher C concentrations and C:N, C:P, C:K, and P:K ratios but lower N, P, and K concentrations than current-year ones (leaves, current-year twigs). Xylem, phloem, and perennial branches exhibited the lowest coefficient of variation and plasticity index. N, P, and K exhibited isometric scaling (α = 0.96–1.04) between absorptive and transport roots. Leaf N and P were positively correlated with K (R² ≥ 0.53). Organ age is a critical determinant influencing the variation in stoichiometric characteristics of the organs. Overall, P. subaequalis adapts to nitrogen-limited wild habitats by adjusting N, P, and K nutrient up-take rates and allocation ratios across current-year organs. Full article

Masu salmon (Oncorhynchus masou) is an ecologically and economically important cold-water salmonid in East Asia that exhibits diverse life-history forms. To compare population-level genomic variation and patterns of homozygosity among fish from different sources, we analyzed whole-genome resequencing data from 465 individuals representing one field-collected Tumen River population (TM) and two landlocked cultured populations from Chicheng (CC) and Yanji (YJ). After quality control, 6,220,980 high-quality SNPs were retained. Population-specific filtering identified 5,589,828, 3,545,209, and 4,975,751 polymorphic SNPs in CC, TM, and YJ, respectively; although SNP numbers differed, approximately 91% of variants in each population were located in intronic or intergenic regions. Principal component analysis, ADMIXTURE, and distance-based neighbor-joining analysis clearly distinguished the three populations, with CC and YJ showing the closest genetic relationship. Pairwise $F_{\mathrm{ST}}$ was lowest between CC and YJ and highest between TM and YJ. CC exhibited the highest linkage disequilibrium, whereas TM showed the fastest LD decay and the lowest nucleotide diversity and heterozygosity. Runs of homozygosity (ROH) burden was highest in TM, intermediate in CC, and lowest in YJ. TM had the highest number of ROHs, cumulative ROH length, and $F_{\mathrm{ROH}}$, and ROHs longer than 5 Mb were detected only in this population. CC had an intermediate ROH burden dominated by short segments, whereas YJ had the lowest ROH-based genomic inbreeding. The high and heterogeneous ROH burden in TM indicates elevated genome-wide homozygosity among the sampled fish but does not, by itself, demonstrate recent inbreeding throughout the population. Candidate ROH islands and their annotated genes showed limited overlap among populations. Candidate genes in TM were primarily associated with ion regulation, neural processes, and energy metabolism, whereas those in CC and YJ shared broad functional categories involving development, muscle organization, nutrient transport, and neural regulation but differed in most specific genes. These regions and genes should be regarded as exploratory, hypothesis-generating candidates rather than evidence of selection or causality. Overall, this study reveals distinct population genomic characteristics and ROH patterns among masu salmon populations of different origins and provides a basis for future germplasm conservation and genetic management. Full article

Connecting the intestinal vasculature with the pre-existing systemic circulatory system is vital for nutrient absorption and blood transport for detoxification in the liver. However, the cellular processes underlying this connection remain unclear. Using genetically modified zebrafish models and in vivo imaging, we visualized that the supra-intestinal artery (SIA) connected to the pre-existing dorsal aorta (DA) in two distinct regions, the anterior and posterior. We found that endothelial cells migrated out of the DA and formed the anterior SIA-DA junction, whereas endothelial cells sprouted from SIA and connected to the DA in the posterior region. Pharmacological and genetic analyses revealed that activin receptor-like kinase 1 (ALK1) signaling was required for the SIA-DA connections. The present study provides new insights into the cellular phenomena and regulatory mechanisms of intestinal vascular development. Full article

While individual Si-nutrient interactions have been reviewed separately, a comparative analysis of multiple Si-element interactions remains lacking. This review compares current knowledge on co-application of Si with selenium (Se), sulphur (S), zinc (Zn) and iron (Fe), focusing on stress tolerance, nutrient homeostasis, physiological responses, secondary metabolism and agronomic relevance. The evidence indicates that combining Si with these elements helps maintain reactive oxygen species (ROS) homeostasis, strengthen antioxidant defenses, stabilize photosynthetic function and improve nutrient uptake, translocation and use efficiency. Responses depend on plant species, nutrient form, application strategy and environmental conditions; at the metabolic level, Si-based combinations affect the synthesis of phenolic compounds, amino acids and sulphur-containing metabolites. Si-Se and Si-Fe proved most effective under heavy-metal stress, through regulation of metal transport, detoxification and sequestration, and Si-S and Si-Zn under drought, salinity and nutrient-deficient conditions, by enhancing osmotic adjustment, nutrient-use efficiency, ionic homeostasis and photosynthetic performance. Agronomically, these interactions can increase crop productivity, nutritional value and biofortification potential, and mitigate toxic-element accumulation in edible parts. Knowledge gaps remain regarding molecular regulation, variability among species and environments, and the long-term effectiveness of nanoparticle formulations. Since most evidence comes from hydroponic, pot and greenhouse studies, standardized field experiments are needed to assess agronomic relevance. Full article