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Keywords = nucleoside di- and triphosphates

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18 pages, 1868 KB  
Article
Mechanical Wounding Induces Rapid RNA-Degrading Activity Mediated by the S-like Ribonuclease PvRNS2 in Common Bean
by Lucia O. Pareja, Gregorio Galvez-Valdivieso, Pedro Piedras and Mercedes Diaz-Baena
Plants 2026, 15(12), 1907; https://doi.org/10.3390/plants15121907 (registering DOI) - 19 Jun 2026
Abstract
Common bean (Phaseolus vulgaris) is an important crop for human nutrition due to its high protein content and capacity to fix atmospheric nitrogen. However, crop productivity is frequently compromised by biotic and abiotic stresses, among which wounding represents a highly prevalent [...] Read more.
Common bean (Phaseolus vulgaris) is an important crop for human nutrition due to its high protein content and capacity to fix atmospheric nitrogen. However, crop productivity is frequently compromised by biotic and abiotic stresses, among which wounding represents a highly prevalent challenge. Thus, understanding early molecular and biochemical responses to tissue damage is essential for improving plant stress resilience. We have investigated the effects of mechanical wounding on nucleic acid-degrading activities in the common bean. Mechanical wounding of leaves rapidly induced ribonuclease activity, whereas nuclease activities remained unchanged. Gel activity assays revealed a predominant ribonuclease, which was identified by proteomic analysis as PvRNS2, a member of the S-like RNase T2 family. This wound-induced ribonuclease was inhibited more strongly by nucleoside di- and triphosphate than by the corresponding nucleoside monophosphate. The increase in ribonuclease activity correlated with a rapid and transient induction of PvRNS2 expression, which peaked at 2 h after injury (600-fold increase). A similar transcriptional response was observed in radicles subjected to mechanical damage (55-fold increase), indicating that PvRNS2 responds to wounding in both aerial and subterranean tissues. In contrast, the wound-induced increase in PvRNS2 expression was not associated with a coordinated upregulation of genes encoding enzymes involved in downstream nucleotide degradation. Together, these results identify PvRNS2 as a major contributor to wound-induced RNA turnover in the common bean and support the involvement of RNA metabolism in early responses to mechanical damage. The participation of ribonucleases in the wound response of economically vital legumes remains unexplored. This work addresses this knowledge gap, establishing a new framework for understanding nucleic acid degradation during legume defense. Full article
(This article belongs to the Section Plant Physiology and Metabolism)
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11 pages, 1260 KB  
Article
Inositol-Exchange Activity in Human Primordial Placenta
by Bence Géza Kovács, Gergely Asbóth, Dorina Supák, Balázs Mészáros, Tamás Marton, Nándor Ács, Sándor Valent and Zoltán Kukor
Int. J. Mol. Sci. 2024, 25(6), 3436; https://doi.org/10.3390/ijms25063436 - 19 Mar 2024
Cited by 1 | Viewed by 2013
Abstract
Human placenta is an intensively growing tissue. Phosphatidylinositol (PI) and its derivatives are part of the signaling pathway in the regulation of trophoblast cell differentiation. There are two different enzymes that take part in the direct PI synthesis: phosphatidylinositol synthase (PIS) and inositol [...] Read more.
Human placenta is an intensively growing tissue. Phosphatidylinositol (PI) and its derivatives are part of the signaling pathway in the regulation of trophoblast cell differentiation. There are two different enzymes that take part in the direct PI synthesis: phosphatidylinositol synthase (PIS) and inositol exchange enzyme (IE). The presence of PIS is known in the human placenta, but IE activity has not been documented before. In our study, we describe the physiological properties of the two enzymes in vitro. PIS and IE were studied in different Mn2+ and Mg2+ concentrations that enabled us to separate the individual enzyme activities. Enzyme activity was measured by incorporation of 3[H]inositol in human primordial placenta tissue or microsomes. Optimal PIS activity was achieved between 0.5 and 2.0 mM Mn2+ concentration, but higher concentrations inhibit enzyme activity. In the presence of Mg2+, the enzyme activity increases continuously up to a concentration of 100 mM. PIS was inhibited by nucleoside di- and tri-phosphates. PI production increases between 0.1 and 10 mM Mn2+ concentration. The incorporation of [3H]inositol into PI increased by 57% when adding stabile GTP analog. The described novel pathway of inositol synthesis may provide an additional therapeutic approach of inositol supplementation before and during pregnancy. Full article
(This article belongs to the Special Issue Molecular Mechanisms of Pregnancy Complications)
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19 pages, 6100 KB  
Article
Pharmacological Nature of the Purinergic P2Y Receptor Subtypes That Participate in the Blood Pressure Changes Produced by ADPβS in Rats
by Roberto C. Silva-Velasco, Belinda Villanueva-Castillo, Kristian A. Haanes, Antoinette MaassenVanDenBrink and Carlos M. Villalón
Pharmaceuticals 2023, 16(12), 1683; https://doi.org/10.3390/ph16121683 - 3 Dec 2023
Cited by 2 | Viewed by 2272
Abstract
Purine nucleosides (adenosine) and nucleotides such as adenosine mono/di/triphosphate (AMP/ADP/ATP) may produce complex cardiovascular responses. For example, adenosine-5′-(β-thio)-diphosphate (ADPβS; a stable synthetic analogue of ADP) can induce vasodilatation/vasodepressor responses by endothelium-dependent and independent mechanisms involving purinergic P2Y receptors; however, the specific subtypes participating [...] Read more.
Purine nucleosides (adenosine) and nucleotides such as adenosine mono/di/triphosphate (AMP/ADP/ATP) may produce complex cardiovascular responses. For example, adenosine-5′-(β-thio)-diphosphate (ADPβS; a stable synthetic analogue of ADP) can induce vasodilatation/vasodepressor responses by endothelium-dependent and independent mechanisms involving purinergic P2Y receptors; however, the specific subtypes participating in these responses remain unknown. Therefore, this study investigated the receptor subtypes mediating the blood pressure changes induced by intravenous bolus of ADPβS in male Wistar rats in the absence and presence of central mechanisms with the antagonists MRS2500 (P2Y1), PSB0739 (P2Y12), and MRS2211 (P2Y13). For this purpose, 120 rats were divided into 60 anaesthetised rats and 60 pithed rats, and further subdivided into four groups (n = 30 each), namely: (a) anaesthetised rats, (b) anaesthetised rats with bilateral vagotomy, (c) pithed rats, and (d) pithed rats continuously infused (intravenously) with methoxamine (an α1-adrenergic agonist that restores systemic vascular tone). We observed, in all four groups, that the immediate decreases in diastolic blood pressure produced by ADPβS were exclusively mediated by peripheral activation of P2Y1 receptors. Nevertheless, the subsequent increases in systolic blood pressure elicited by ADPβS in pithed rats infused with methoxamine probably involved peripheral activation of P2Y1, P2Y12, and P2Y13 receptors. Full article
(This article belongs to the Special Issue Adenosine Metabolism-Key Targets in Cardiovascular Pharmacology)
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28 pages, 10809 KB  
Review
Nucleoside Di- and Triphosphates as a New Generation of Anti-HIV Pronucleotides. Chemical and Biological Aspects
by Marta Rachwalak, Joanna Romanowska, Michal Sobkowski and Jacek Stawinski
Appl. Sci. 2021, 11(5), 2248; https://doi.org/10.3390/app11052248 - 4 Mar 2021
Cited by 2 | Viewed by 7191
Abstract
This review provides a short account of the chemical synthesis of nucleoside di- and triphosphates on a historical background, together with the use of this class of compounds as potential pronucleotides in anti-HIV therapy. Full article
(This article belongs to the Special Issue Applications of Nucleic Acids in Chemistry and Biology)
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12 pages, 1770 KB  
Article
ATP- and Polyphosphate-Dependent Glucokinases from Aerobic Methanotrophs
by Alexander S. Reshetnikov, Natalia P. Solntseva, Olga N. Rozova, Ildar I. Mustakhimov, Yuri A. Trotsenko and Valentina N. Khmelenina
Microorganisms 2019, 7(2), 52; https://doi.org/10.3390/microorganisms7020052 - 14 Feb 2019
Cited by 6 | Viewed by 4951
Abstract
The genes encoding adenosine triphosphate (ATP)- and polyphosphate (polyP)-dependent glucokinases (Glk) were identified in the aerobic obligate methanotroph Methylomonas sp. 12. The recombinant proteins were obtained by the heterologous expression of the glk genes in Esherichia coli. ATP-Glk behaved as a multimeric [...] Read more.
The genes encoding adenosine triphosphate (ATP)- and polyphosphate (polyP)-dependent glucokinases (Glk) were identified in the aerobic obligate methanotroph Methylomonas sp. 12. The recombinant proteins were obtained by the heterologous expression of the glk genes in Esherichia coli. ATP-Glk behaved as a multimeric protein consisting of di-, tri-, tetra-, penta- and hexamers with a subunit molecular mass of 35.5 kDa. ATP-Glk phosphorylated glucose and glucosamine using ATP (100% activity), uridine triphosphate (UTP) (85%) or guanosine triphosphate (GTP) (71%) as a phosphoryl donor and exhibited the highest activity in the presence of 5 mM Mg2+ at pH 7.5 and 65 °C but was fully inactivated after a short-term incubation at this temperature. According to a gel filtration in the presence of polyP, the polyP-dependent Glk was a dimeric protein (2 × 28 kDa). PolyP-Glk phosphorylated glucose, mannose, 2-deoxy-D-glucose, glucosamine and N-acetylglucosamine using polyP as the phosphoryl donor but not using nucleoside triphosphates. The Km values of ATP-Glk for glucose and ATP were about 78 μM, and the Km values of polyP-Glk for glucose and polyP(n=45) were 450 and 21 μM, respectively. The genomic analysis of methanotrophs showed that ATP-dependent glucokinase is present in all sequenced methanotrophs, with the exception of the genera Methylosinus and Methylocystis, whereas polyP-Glks were found in all species of the genus Methylomonas and in Methylomarinum vadi only. This work presents the first characterization of polyphosphate specific glucokinase in a methanotrophic bacterium. Full article
(This article belongs to the Special Issue Recombinant Protein Expression in Microorganisms)
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19 pages, 968 KB  
Article
Synthesis, Hydrolysis, and Protonation-Promoted Intramolecular Reductive Breakdown of Potential NRTIs: Stavudine α-P-Borano-γ-P-N-l-tryptophanyltriphosphates
by Zhihong Xu and Barbara Ramsay Shaw
Molecules 2015, 20(10), 18808-18826; https://doi.org/10.3390/molecules201018808 - 16 Oct 2015
Cited by 2 | Viewed by 7872
Abstract
Phosphorus-modified prodrugs of dideoxynucleoside triphosphates (ddNTPs) have shown promise as pronucleotide strategies for improving antiviral activity compared to their parent dideoxynucleosides. Borane modified NTPs offer a promising choice as nucleoside/nucleotide reverse transcriptase inhibitors (NRTIs). However, the availability of α-P-borano-γ-P-substituted [...] Read more.
Phosphorus-modified prodrugs of dideoxynucleoside triphosphates (ddNTPs) have shown promise as pronucleotide strategies for improving antiviral activity compared to their parent dideoxynucleosides. Borane modified NTPs offer a promising choice as nucleoside/nucleotide reverse transcriptase inhibitors (NRTIs). However, the availability of α-P-borano-γ-P-substituted NTP analogs remains limited due to challenges with synthesis and purification. Here, we report the chemical synthesis and stability of a new potential class of NRTI prodrugs: stavudine (d4T) 5′-α-P-borano-γ-P-N-L-tryptophanyltriphosphates. One-pot synthesis of these compounds was achieved via a modified cyclic trimetaphosphate approach. Pure Rp and Sp diastereomers were obtained after HPLC separation. Based on LC-MS analysis, we report degradation pathways, half-lives (5–36 days) and mechanisms arising from structural differences to generate the corresponding borano tri- and di-phosphates, and H-phosphonate, via several parallel routes in buffer at physiologically relevant pH and temperature. Here, the major hydrolysis products, d4T α-P-boranotriphosphate Rp and Sp isomers, were isolated by HPLC and identified with spectral data. We first propose that one of the major degradation products, d4T H-phosphonate, was generated from the d4T pronucleotides via a protonation-promoted intramolecular reduction followed by a second step nucleophilic attack. This report could provide valuable information for pronucleotide-based drug design in terms of selective release of target nucleotides. Full article
(This article belongs to the Special Issue Frontiers in Nucleic Acid Chemistry)
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