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26 pages, 3306 KB  
Article
Deployment-Oriented Interpretable Fraud Detection via Hybrid Explainable Boosting Machines with Concept–Raw Fusion on the IEEE-CIS Benchmark
by Jeongtae Kang and Keecheon Kim
Appl. Sci. 2026, 16(12), 5809; https://doi.org/10.3390/app16125809 - 9 Jun 2026
Viewed by 91
Abstract
Fraud detection models often achieve a strong ranking performance through black-box ensembles, but operational deployment also requires calibration, low explanation cost, and auditable scoring logic. This study develops an interpretable fraud-detection pipeline for IEEE-CIS by combining a 63-variable causal concept bank with teacher-guided [...] Read more.
Fraud detection models often achieve a strong ranking performance through black-box ensembles, but operational deployment also requires calibration, low explanation cost, and auditable scoring logic. This study develops an interpretable fraud-detection pipeline for IEEE-CIS by combining a 63-variable causal concept bank with teacher-guided additive Explainable Boosting Machine (EBM) students. The concept bank summarizes the temporal state, entity history, novelty/reuse, identity missingness, and aggregate deviation. Experiments use a chronological out-of-time split and a stricter pseudo-entity-disjoint holdout. In the main three-seed evaluation, the CatBoost predictive ceiling and XGBoost teacher achieved PR-AUC 0.489 ± 0.001 and 0.478 ± 0.003, respectively. Among interpretable models, concept-only EBM reached 0.189 ± 0.000, raw-only EBMs reached 0.372 ± 0.005 (top-k = 8) and 0.383 ± 0.002 (top-k = 12), and hybrid EBMs reached 0.407 ± 0.003 (top-k = 8) and 0.407 ± 0.004 (top-k = 12), consistently improving over matched raw-only additive baselines. The final top-k = 8 hybrid reduced input features from 154 to 71, achieved about 9.7× faster inference than XGBoost, remained close to XGBoost in ECE-15 calibration (0.01587 vs. 0.01611) while having a higher Brier score, and produced native local explanations far faster than XGBoost + SHAP. The results position CatBoost as the predictive ceiling and hybrid EBM as a benchmark-supported, deployment-relevant interpretable compromise for applied financial risk-screening workflows, rather than as a production-validated fraud-monitoring system. Full article
(This article belongs to the Section Computing and Artificial Intelligence)
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18 pages, 5102 KB  
Article
Purification, Amino Acid Sequence, and Structural Features of a Novel Expansin-like A from the Seeds of Canihua (Chenopodium pallidicaule Aellen)
by Sara Ragucci, Maria Giuseppina Campanile, Rosario Iglesias, Nicola Landi, Claudia Carolina Gay, Angela Oliver, Robina Khan, Lucía Citores, José Miguel Ferreras and Antimo Di Maro
Int. J. Mol. Sci. 2026, 27(12), 5213; https://doi.org/10.3390/ijms27125213 - 9 Jun 2026
Viewed by 115
Abstract
Expansin-like A (EXLA) proteins belong to one of the four main families within the expansin superfamily, a group of plant proteins essential for cell wall loosening. Here, we report, for the first time, the purification of a novel EXLA, named cpEXLA, from canihua [...] Read more.
Expansin-like A (EXLA) proteins belong to one of the four main families within the expansin superfamily, a group of plant proteins essential for cell wall loosening. Here, we report, for the first time, the purification of a novel EXLA, named cpEXLA, from canihua seeds. cpEXLA (yield ~0.16 mg per 100 g of seeds) is a 29 kDa glycoprotein with a high melting temperature (Tm of 86.75 ± 1.06 °C). Elucidation of its primary structure reveals that the mature protein consists of 246 amino acids, ten of which are cysteine residues forming five disulphide bridges. Structural studies based on 3D model prediction reveal the presence of N- and C-terminal domains, which are typical of EXLAs and rich in β-sheets, as confirmed by circular dichroism (CD) spectroscopy. Furthermore, comparative analysis of amino acid sequences between cpEXLA and 219 similar EXLAs, retrieved from dicotyledonous genomes and transcriptomes, identified eighteen invariant amino acid residues: eleven in the N-terminal domain and seven in the C-terminal domain. Finally, phylogenetic analysis of EXLAs in dicotyledonous species shows a close relationship with other EXLAs from the Amaranthaceae family, confirming that EXLA proteins are highly conserved among dicotyledonous plants. Overall, cpEXLA represents an intriguing native tool for studying cell wall evolution and the functional role of EXLAs. Full article
(This article belongs to the Special Issue New Insights in Plant Cell Biology)
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53 pages, 3701 KB  
Article
Closed-Set Heterogeneous Domain Adaptation for IoT Intrusion Detection: An Anchor-Based Benchmark Across Single- and Multi-Source Transfer
by Mohammad Chizari, Qublai Khan Ali Mirza, Abu Alam and Hassan Chizari
Sensors 2026, 26(11), 3610; https://doi.org/10.3390/s26113610 - 5 Jun 2026
Viewed by 227
Abstract
Closed-set heterogeneous domain adaptation (HDA) for Internet of Things (IoT) intrusion detection aims to transfer detection capabilities across environments that differ in devices, telemetry, feature schemas, attack implementations, label taxonomies, and target supervision availability. Although recent HDA methods report strong performance, their deployment [...] Read more.
Closed-set heterogeneous domain adaptation (HDA) for Internet of Things (IoT) intrusion detection aims to transfer detection capabilities across environments that differ in devices, telemetry, feature schemas, attack implementations, label taxonomies, and target supervision availability. Although recent HDA methods report strong performance, their deployment meaning is often unclear because improvements over a weak source-only baseline do not show how much target supervision headroom has been recovered or whether adaptation is preferable to direct target-side labelling under the same budget. This paper presents a controlled, anchor-based benchmark for closed-set HDA in IoT intrusion detection. Edge-IIoTset is used as the main fixed target dataset, with transfer from CICIDS2017, UNSW-NB15, CICIDS2017 + UNSW-NB15, and CICIDS2017 + NSL-KDD under single-source and multi-source settings. The benchmark defines fixed resolved contexts, Intersection and Union representation contracts, a five-class closed-set label contract, leakage-safe preprocessing, and an anchor ladder consisting of source-only, correlation alignment (CORAL), matched-budget target-only, and oracle target-only references. Geometric Graph Alignment (GGA) and the Joint Semantic Transfer Network (JSTN) are evaluated as the primary selected native single-source semi-supervised HDA (SS-HDA) and multi-source semi-supervised HDA (MS-HDA) exemplars, while the Prototype-Matching Graph Network (PMGN) and Conditional Weighting Adversarial Network (CWAN) provide 1:10 method coverage checks. Each method–context–ratio configuration is evaluated across twenty fixed seeds, and DA-versus-target-only differences are tested using paired seed-level statistical evidence. A compact second-target confirmatory experiment using ToN-IoT assesses whether the qualitative headroom recovery and same-budget deployment patterns remain visible under a different IoT/IIoT target. The results show that primary native HDA can recover substantial source-only-to-oracle headroom, but not uniformly. At the 1:10 labelled target ratio, GGA recovers 0.6330.835 of the available headroom across C1–C4, while JSTN recovers 0.7760.897 in the contemporary-source MS-HDA family and 0.8720.926 in the mixed-vintage family. Same-budget comparisons show that DA is deployment-competitive only in some contexts; in others, direct target-side supervised learning is stronger. The benchmark therefore shows that closed-set HDA should be evaluated as target-conditioned, context-resolved evidence rather than as a pooled method leaderboard. Full article
(This article belongs to the Special Issue Recent Advances in IoT Multi Sensors)
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14 pages, 1804 KB  
Review
Ecological Invasion, Impact, and Management of Johnsongrass [Sorghum halepense (L.) Pers.] for Sustainable Livestock Production: A Systematic Review
by Sive Tokozwayo, Azile Dumani, Monde Rapiya, Wandile Mashece, Ayanda Kwaza, Siza Mthi and Lwando Royimani
Ecologies 2026, 7(2), 51; https://doi.org/10.3390/ecologies7020051 - 5 Jun 2026
Viewed by 247
Abstract
Sorghum halepense is widely recognised as one of the most aggressive invasive perennial grasses affecting agricultural ecosystems worldwide. This systematic review synthesises existing scientific evidence on the ecological invasion dynamics, origin, distribution patterns, impacts on both biodiversity and livestock, and management strategies. A [...] Read more.
Sorghum halepense is widely recognised as one of the most aggressive invasive perennial grasses affecting agricultural ecosystems worldwide. This systematic review synthesises existing scientific evidence on the ecological invasion dynamics, origin, distribution patterns, impacts on both biodiversity and livestock, and management strategies. A systematic literature review approach was employed to identify and evaluate peer-reviewed and grey literature. Relevant studies were retrieved from major scientific databases, including Google Scholar, PubMed, and ResearchGate, using predefined search terms related to S. halepense, invasion, impact on native plants and livestock, and possible control measures. Articles were screened based on relevance, methodological quality, and thematic alignment with the objectives of the review. The results showed that Johnsongrass is making a gradual invasion in South Africa through seed production and rhizome systems. Sorghum halepense alters native species composition, subsequently reduces biodiversity, and outcompetes native species. Although it may provide forage under certain conditions, its accumulation of cyanogenic compounds and nitrates poses serious poisoning risks to herbivores. Management strategies such as mechanical, burning, and chemical methods vary in terms of effectiveness. Some of these measures are influenced by the genetic make-up of the plant, costs associated with each control measure and other environmental factors. This review highlights the need for integrated management approaches that balance invasive weed control with sustainable forage production. This review emphasises the importance of adopting integrated management strategies that effectively control both seed production and underground stems. Future research should prioritise climate-responsive management approaches, improved understanding of invasion ecology, and the development of cost-effective control measures. Bringing together policy makers and specialists in weed science, natural conservation science, and animal health will be essential for reaching consensus on the actions required to curb the expansion and reduce the economic losses associated with the abundance of Sorghum halepense in our ecosystems. Full article
(This article belongs to the Special Issue Feature Review Papers in Ecology)
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25 pages, 8928 KB  
Article
Diversity of Fusarium Species Causing Storage Rot of Table Beet in the Moscow Region of the Russian Federation
by Svetlana Vetrova, Elena Kozar, Irina Engalycheva, Kseniya Mukhina, Vera Chizhik and Viktor Martynov
J. Fungi 2026, 12(6), 413; https://doi.org/10.3390/jof12060413 - 5 Jun 2026
Viewed by 421
Abstract
Fusarium fungi are known to infect table beet (Beta vulgaris subsp. vulgaris) plants at various stages of development worldwide. Fusarium root rot, which develops post-harvest during long-term storage, is of particular economic significance. In Russia, there is no up-to-date information about [...] Read more.
Fusarium fungi are known to infect table beet (Beta vulgaris subsp. vulgaris) plants at various stages of development worldwide. Fusarium root rot, which develops post-harvest during long-term storage, is of particular economic significance. In Russia, there is no up-to-date information about the species diversity of pathogens causing this disease of table beets, which determined the purpose of this study. A total of 28 Fusarium isolates were collected from affected beet roots grown in the Moscow region of the Russian Federation from 2018 to 2023 years. Molecular phylogeny based on the TEF-1α and RPB2 genes in combination with morphological characterization showed that five Fusarium species were involved in the pathogenesis of Fusarium root rot of table beet during storage: F. acuminatum (43% of the total number of isolates), F. avenaceum, F. campestre (FTSC); F. sporotrichioides (FSAMSC) and F. solani (FSSC). At the same time, the species F. acuminatum, F. campestre, and F. sporotrichioides were first discovered on beet root in the Russian Federation. Temperature sensitivity of the identified species was studied at 5 °C and 25 °C. According to the value of the cold sensitivity index (CTI) on the nutrient medium and native substrate, the isolates were distributed differently: F. campestre (0.32) > F. acuminatum (0.22) > F. avenaceum (0.21) > F. sporotrichioides (0.19) > F. solani (0.20) and F. acuminatum (0.32) > F. campestre (0.21) > F. solani (0.03) > F. avenaceum and F. sporotrichioides (0.01), respectively. This confirms the need to study the pathogenic properties of isolates on a natural substrate (host plant) under different temperature conditions. When infected with the dominant and most aggressive species F. acuminatum, there was a high variation in the size of the affected area, depending on the genotype of the lines, under both temperature conditions (Va = 2–8 mm3 at 5 °C and Va = 31–1760 mm3 at 25 °C). Therefore, this species can be considered to be the most objective differentiating factor in assessing the resistance of table beet roots to fusarium rot, which determines the need to include it in the breeding process for creating resistant varieties and hybrids for the Central region of Russia. The data obtained in this study are of great importance for developing strategies for managing Fusarium fungi associated with Fusarium rot of beet-root during storage. The research results will also be relevant for other vegetable crops that remain fresh for long periods of time or undergo vernalization in the case of seed production at low temperatures. Full article
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17 pages, 4297 KB  
Article
Genetic Diversity Analysis and Core Collection Development of Indian Mungbean (Vigna radiata) Germplasm
by Manickam Dhasarathan, Adhimoolam Karthikeyan, Santhi Madhavan Samyuktha, Lekshmi Jeeva Kasi Vishwanathan, Gunasekaran Ariharasutharsan, Natesan Senthil and Muthaiyan Pandiyan
Plants 2026, 15(11), 1733; https://doi.org/10.3390/plants15111733 - 3 Jun 2026
Viewed by 251
Abstract
Mungbean is an important legume crop native to India. In this study, 500 indigenous mungbean accessions collected from diverse eco-geographical regions of India were evaluated for agronomic trait genetic variability and core collection development. The accessions were grown in an augmented design during [...] Read more.
Mungbean is an important legume crop native to India. In this study, 500 indigenous mungbean accessions collected from diverse eco-geographical regions of India were evaluated for agronomic trait genetic variability and core collection development. The accessions were grown in an augmented design during 2019 and 2020, and data were recorded for seven quantitative and 13 qualitative traits. Analysis of variance (ANOVA), frequency distribution, and box-plot analyses revealed substantial phenotypic variation among the accessions. Traits including plant height (PHT), number of pods per plant (NPP), hundred-seed weight (HSW), and single-plant yield (SPY) exhibited high heritability coupled with high genetic advance, indicating the predominance of additive genetic effects. Principal component analysis showed that the first three principal components explained 70% of the total phenotypic variation. The Shannon–Weaver diversity index further indicated high levels of genetic diversity within the population. Based on quantitative traits, the accessions were grouped into six major clusters and 42 sub-clusters, with SPY, NPP, HSW, PHT, and days to 50% flowering (DFF) contributing substantially to genetic divergence. Correlation analysis suggested that direct selection for SPY and indirect selection through associated traits, including NPP, HSW, PHT, NSP, and pod length (POL), may enhance yield improvement. The germplasm collection also possessed desirable traits such as high yield potential, contrasting maturity groups, and plant types suitable for mechanical harvesting and bold-seeded type. A representative core set comprising 50 accessions was developed using the PowerCore program, providing valuable genetic resources for mungbean breeding and genetic improvement programs. Full article
(This article belongs to the Special Issue Genetic Diversity and Population Structure of Plants—2nd Edition)
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18 pages, 43769 KB  
Article
Electrospun Nanofiber Scaffolds for In Vitro 3D Tissue Engineering
by Victoria E. Santillan, Samerender Nagam Hanumantharao, Stephanie Bule, Ronish M. Shrestha, Carter Rodzik, Alan Mendoza Estrada, Stephen L. Farias, Marina Tanasova and Smitha Rao
Fibers 2026, 14(6), 65; https://doi.org/10.3390/fib14060065 - 31 May 2026
Viewed by 297
Abstract
Tissue engineering is widely used in research for investigating cellular proliferation, behavior, and responses to various stimuli. However, the predictive value of preclinical studies using cell culture plates is limited by the inability to recapitulate the complexity of the physiological microenvironment. Synthetic three-dimensional [...] Read more.
Tissue engineering is widely used in research for investigating cellular proliferation, behavior, and responses to various stimuli. However, the predictive value of preclinical studies using cell culture plates is limited by the inability to recapitulate the complexity of the physiological microenvironment. Synthetic three-dimensional (3D) scaffolds can be engineered to mimic the complex morphology of the extracellular matrix of native tissues and can serve as physiologically relevant platforms for preclinical studies. In this study, 3D electrospun scaffolds were characterized to aid in breast cancer research. Unlike previous studies that focused primarily on scaffold fabrication or cell viability, this work systematically evaluates how scaffold morphology influences breast epithelial and breast cancer cell behavior within three-dimensional microenvironments. Breast cancer cell lines and normal breast epithelial cells were seeded on scaffolds of different morphologies, on commercially available mesh scaffolds, and on standard tissue culture plates. Cells were treated with a fluorescent fructose mimic (ManCou-H) that targets the fructose-specific transporter GLUT5 to assess metabolic activity on different scaffolds. The study evaluated cell–cell and cell–matrix interactions through time-lapse experiments, cell metabolism, and variations in the expression of cytoskeletal protein (CK18) and GLUT5. Statistically relevant differences were observed between cells cultured on scaffolds and plates, and different scaffolds morphologies. Results from this study demonstrate that scaffold topology alone can significantly alter cellular phenotype and metabolic responses, highlighting the importance of scaffold selection in the development of predictive non-animal in vitro models and studies of the tumor microenvironment. Full article
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19 pages, 5142 KB  
Article
Facile and Green Fabrication of Porous Hydrogels Based on Gelatin Microsphere Porogens for 3D Immune Cell Culture
by Han Fu, Qiwen Yao, Shuai Tan, Yingming Wang and Aishun Jin
Gels 2026, 12(6), 477; https://doi.org/10.3390/gels12060477 - 29 May 2026
Viewed by 168
Abstract
Porous hydrogels are critical for tissue engineering and regenerative medicine, as they mimic the native extracellular matrix to support cell infiltration and mass transport. A common strategy for engineering pore structures involves the incorporation and subsequent removal of sacrificial porogen templates (e.g., crystals [...] Read more.
Porous hydrogels are critical for tissue engineering and regenerative medicine, as they mimic the native extracellular matrix to support cell infiltration and mass transport. A common strategy for engineering pore structures involves the incorporation and subsequent removal of sacrificial porogen templates (e.g., crystals or microspheres). Although this approach offers excellent control over pore architecture, it often suffers from complex procedures and biosafety concerns arising from incomplete template removal. In this work, we present a simple, biocompatible, and versatile templating approach. By systematically investigating the coacervation parameters, we produced gelatin microspheres (GSs) with tunable diameters from 7 µm to 300 µm via a green, instrument-free, and scalable process. Using GSs of 20–160 µm as porogens, we obtained alginate hydrogels with adjustable viscoelasticity, stiffness, and pore sizes. We then validated two cell-loading strategies for bulk porous alginate hydrogels using immortalized human T (Jurkat) cells: (i) post-seeding into pre-formed pores supported high-density, long-term, and organized cell aggregates with >90% viability; (ii) in situ encapsulation (prior to pore formation) yielded >80% viability and preserved the cluster-forming growth characteristics of Jurkat cells. Moreover, composites of smaller GSs (7–20 µm) with alginate could be syringe-extruded into stable, sub-millimeter porous filaments, demonstrating the potential for 3D printing. Collectively, this work provides a promising platform for three-dimensional culture of immune cells. Full article
(This article belongs to the Section Gel Chemistry and Physics)
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15 pages, 1486 KB  
Article
Development of Chloroplast Microsatellite Markers and Assessment of Genetic Diversity and Population Structure of Sophora tonkinensis Gagnep. in Southwestern China
by Xiaoyan He, Ying Liang, Chunli Wang, Xinghao Li, Shuangshuang Qin, Linxuan Li, Guili Wei, Danfeng Tang, Zhanjiang Zhang and Fan Wei
Curr. Issues Mol. Biol. 2026, 48(6), 562; https://doi.org/10.3390/cimb48060562 - 28 May 2026
Viewed by 150
Abstract
Sophora tonkinensis Gagnep. is an important medicinal shrub native to the karst regions of southwestern China, where long-term overharvesting and habitat fragmentation have markedly reduced wild resources. Although recent phytochemical, transcriptomic, and chloroplast genomic studies have improved understanding of this species, its maternally [...] Read more.
Sophora tonkinensis Gagnep. is an important medicinal shrub native to the karst regions of southwestern China, where long-term overharvesting and habitat fragmentation have markedly reduced wild resources. Although recent phytochemical, transcriptomic, and chloroplast genomic studies have improved understanding of this species, its maternally inherited population structure has remained unclear. To address this gap, we developed nine novel chloroplast simple sequence repeat (cpSSR) markers and used them to genotype 274 individuals from eighteen wild populations. A total of 41 alleles were detected, with 2–10 alleles per locus, indicating moderate to high polymorphism at the species level. By combining the nine cpSSR loci, we further identified 25 chlorotypes, including 19 private chlorotypes. Within-population chloroplast diversity was generally low, and five populations were monomorphic, whereas HJSE and LYNG retained comparatively high chlorotype diversity. Genetic differentiation among populations was extremely strong (mean FST = 0.808), whereas historical gene flow was very limited (Nm = 0.112), and AMOVA showed that 85% of total chloroplast variation occurred among populations. Taken together, chlorotype network analysis, chlorotype geographic distribution, UPGMA, PCoA, and exploratory STRUCTURE analysis supported three geographically structured chloroplast groups, indicating long-term restriction of seed-mediated dispersal across the fragmented karst landscape. These newly developed cpSSR markers and the derived chlorotype framework provide a practical basis for tracing maternal lineages, prioritizing conservation units, guiding ex situ germplasm sampling, and informing future breeding of this nationally protected species. Overall, the present results describe chloroplast-based maternal structure rather than total genome-wide diversity in S. tonkinensis. Full article
(This article belongs to the Special Issue Molecular Breeding and Genetics Research in Plants—3rd Edition)
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25 pages, 2938 KB  
Systematic Review
Sustainable Management of Leucaena leucocephala in Wetland and Riparian Ecosystems: A Systematic Review of Ecological Impacts and Control Strategies
by Lilian Cristine Camillo, Paula Polastri, Maria Teresa Fernandez Piedade and Aline Lopes
Stresses 2026, 6(2), 31; https://doi.org/10.3390/stresses6020031 - 27 May 2026
Viewed by 274
Abstract
Leucaena leucocephala is a nitrogen-fixing legume widely used in agroforestry systems, although its invasive potential poses increasing risks to wetlands and riparian ecosystems. This systematic review synthesizes current knowledge on the ecological mechanisms, environmental stressors, and management strategies associated with the invasion of [...] Read more.
Leucaena leucocephala is a nitrogen-fixing legume widely used in agroforestry systems, although its invasive potential poses increasing risks to wetlands and riparian ecosystems. This systematic review synthesizes current knowledge on the ecological mechanisms, environmental stressors, and management strategies associated with the invasion of L. leucocephala in humid tropical environments. Following PRISMA guidelines, 60 studies retrieved from Scopus, Web of Science, and Consensus were qualitatively analyzed. The results indicate that invasion success is strongly associated with environmental disturbances and stress conditions, particularly drought stress, altered hydrological regimes, fire occurrence, and land-use change, which reduce ecosystem resistance and facilitate species establishment. Key invasion mechanisms include high seed production, persistent soil seed banks, rapid growth, allelopathic effects, and strong resprouting capacity, leading to suppression of native vegetation and structural simplification of plant communities. Integrated management strategies combining mechanical and chemical control with active revegetation consistently showed higher effectiveness than isolated approaches. The evidence further suggests that climate-related stressors may intensify invasion dynamics and increase ecosystem vulnerability under future climate scenarios. Despite recent advances, important knowledge gaps remain regarding long-term ecosystem functioning, hydrological feedback, and adaptive management in invaded wetlands. Full article
(This article belongs to the Section Plant and Photoautotrophic Stresses)
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20 pages, 17869 KB  
Article
Optimizing Ecological Restoration in Alpine Mining Areas Through Fertilization and Seeding-Rate Management: Insights from Vegetation–Soil Stoichiometry
by Nannan Hu, Xiaoyan Wang, Mingdan Song, Fuzhen Jiang, Kaibin Qi and Zhengpeng Li
Plants 2026, 15(11), 1640; https://doi.org/10.3390/plants15111640 - 27 May 2026
Viewed by 229
Abstract
The Muli mining area on the Qinghai–Tibet Plateau lies within a permafrost region where long-term coal mining has severely degraded native grassland ecosystems. To identify an effective restoration strategy, this study evaluated plant and soil ecological stoichiometry and stoichiometric homeostasis under different combinations [...] Read more.
The Muli mining area on the Qinghai–Tibet Plateau lies within a permafrost region where long-term coal mining has severely degraded native grassland ecosystems. To identify an effective restoration strategy, this study evaluated plant and soil ecological stoichiometry and stoichiometric homeostasis under different combinations of fertilization and seeding rates. A two-factor field experiment was conducted with three fertilization levels (F1–F3) and three seeding rates (S1–S3), using bare slag (BS) and natural grassland (NG) as reference controls. The F3S3 treatment produced the highest aboveground biomass (AGB), representing a 293.55% increase relative to NG. The F2S2 treatment significantly increased plant nitrogen (PN) and phosphorus (PP) contents. In addition, plant carbon-to-nitrogen (PC:PN), carbon-to-phosphorus (PC:PP), and nitrogen-to-phosphorus (PN:PP) ratios under the F2S2, F1S2, and F3S3 treatments, respectively, were closest to those of NG. The PN:PP ratio ranged from 6.05 to 8.20 (<14), indicating that plant growth in the restored plots remained primarily nitrogen-limited. Soil stoichiometric ratios (SOC:TN, SOC:TP, and TN:TP) under the F1S3, F1S1, and F1S2 treatments, respectively, were most similar to those of NG. Principal component analysis (PCA) showed that F3S3 produced the greatest short-term improvement in plant productivity and soil fertility, whereas F2S2 showed the most favorable stoichiometric homeostasis and C:N:P balance relative to natural grassland. Random forest modeling further identified soil total phosphorus, SOC:TN, and available phosphorus as the main factors controlling AGB formation. Overall, F3S3 is suitable for rapid short-term vegetation recovery, whereas F2S2 is more advantageous for long-term restoration when vegetation–soil stoichiometric balance and homeostatic stability are considered. Therefore, restoration projects in similar alpine permafrost mining areas should prioritize the F2S2 treatment to improve both ecological function and system stability. Full article
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21 pages, 16166 KB  
Article
Seed Endophyte Bacillus atrophaeus Colonizes Root and Shoot Tissues Providing Antifungal Activity During Wheat Seedling Establishment
by Anagha Wankhade, Zhiting Xu, Ashlynn Clark and David Britt
Seeds 2026, 5(3), 30; https://doi.org/10.3390/seeds5030030 - 26 May 2026
Viewed by 382
Abstract
Seed-associated endophytes become active during germination, playing important roles as early colonizers of plant tissues and contributing to plant health while residing in a protective niche. In this study, we characterized a wheat-derived bacterial isolate, JunSE1L, to determine its functional traits and ecological [...] Read more.
Seed-associated endophytes become active during germination, playing important roles as early colonizers of plant tissues and contributing to plant health while residing in a protective niche. In this study, we characterized a wheat-derived bacterial isolate, JunSE1L, to determine its functional traits and ecological role in the plant microbiome. The isolate was identified as Bacillus atrophaeus based on 16S rRNA analysis. JunSE1L exhibited nutrient-dependent plasticity in colony architecture, forming robust hydrophobic biofilms and pellicles under rich nutrient availability while swarming and forming thin, often dendritic colonies under defined nutrition. JunSE1L produced highly surface-active compounds that lowered the surface tension of water to 30 mN/m and released potent proteolytic and hemolytic compounds, thus equipping JunSE1L for antagonistic interactions, as examined against several fungal pathogens. JunSE1L inhibited Fusarium proliferatum and Mucor hiemalis in live-cell assays, while cell-free supernatant selectively inhibited M. hiemalis. JunSE1L was recovered from multiple plant compartments, including rhizosphere, rhizoplane, and aerial tissues, and was observed to emerge from cut plant tissues, supporting seed-endophyte mobilization upon germination to colonize distal tissues. Seed surface inoculation experiments with JunSE1L showed limited attachment at low cell densities and reduced seedling vigor at higher inoculum levels, indicating that inoculum density and native microbiome interactions influence seedling performance. Full article
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14 pages, 2737 KB  
Article
Assessing the Impact of Storage Duration on Alder (Alnus glutinosa (L.) Gaertn.) and Downy Birch (Betula pubescens Ehrh.) Seed Quality and Germination
by Saoirse O’Neill Field, Antonia Alessandra Lemos Dos Santos, Elena Grosu, Eoin O’Connor, Brian O’Connor, Colin T. Kelleher and Dheeraj Singh Rathore
Seeds 2026, 5(3), 29; https://doi.org/10.3390/seeds5030029 - 23 May 2026
Viewed by 310
Abstract
The long-term storage of seeds is important for conserving native species, but its effectiveness depends on maintaining seed quality. This study assessed the impact of storage duration on seed quality in Alnus glutinosa (alder) and Betula pubescens (downy birch). Seed quality was evaluated [...] Read more.
The long-term storage of seeds is important for conserving native species, but its effectiveness depends on maintaining seed quality. This study assessed the impact of storage duration on seed quality in Alnus glutinosa (alder) and Betula pubescens (downy birch). Seed quality was evaluated using thousand-seed weight (TSW), moisture content (MC), tetrazolium (TZ) viability, and germination tests. Results from stored seed lots were compared with those from recently collected seeds. Moisture content, TZ viability, and germination were significantly affected by storage duration, although sensitivity analyses indicated that storage conditions, particularly lower temperature and airtight storage, may have contributed to improved seed viability in specific seed lots. A relationship between TZ viability and germination was observed, although this was influenced by zero values. Cold stratification improved germination in downy birch but did not compensate for reduced viability in older seed lots. These findings highlight the importance of storage conditions and species-specific pre-treatments and support the use of TZ testing as a rapid indicator of seed viability when used alongside germination testing. The results provide practical guidance for managing seed resources and maintaining reliable forest reproductive material supply. Full article
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12 pages, 3041 KB  
Article
Allelopathic Effects of Compounds from the Ethanol Extract of Artemisia frigida on Five Invasive Alien Plants
by Nufen Li, Jiadi Zhang, Wei Hua, Lifeng Wang, Shangfeng Zhou, Kailin Liu and Haona Yang
Plants 2026, 15(10), 1528; https://doi.org/10.3390/plants15101528 - 16 May 2026
Viewed by 378
Abstract
Invasive alien plants seriously threaten native plant biodiversity and agricultural production. The development of environmentally friendly agriculture requires sustainable weed control techniques to manage these invasive alien weeds. This study evaluated the allelopathic effects of ethanol extract from Artemisia frigida against five invasive [...] Read more.
Invasive alien plants seriously threaten native plant biodiversity and agricultural production. The development of environmentally friendly agriculture requires sustainable weed control techniques to manage these invasive alien weeds. This study evaluated the allelopathic effects of ethanol extract from Artemisia frigida against five invasive alien plants (Ageratum conyzoides, Bidens pilosa, Ipomoea purpurea, Eclipta prostrata, and Amaranthus retroflexus). The main components in the extract were identified using high-performance liquid chromatography–tandem mass spectrometry (LC-MS/MS), and we assessed their allelopathic effects on seed germination of the five species. The results showed that the ethanol extract of A. frigida completely inhibited seed germination of all five invasive plants at 5 g·L−1. Thirteen components were identified, among which 4-ethyloctanoic acid, cis-jasmone, and p-anisic acid exhibited significant inhibitory effects. Notably, 4-ethyloctanoic acid demonstrated broad-spectrum herbicidal activity. At 50 mg·L−1, it completely inhibited B. pilosa growth and had the strongest inhibitory effects on A. conyzoides and E. prostrata. This compound disrupted redox homeostasis and induced oxidative stress by modulating antioxidant enzyme activities, including superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT). These findings indicate that 4-ethyloctanoic acid is the main allelochemical with herbicidal potential in A. frigida, providing a theoretical basis for developing novel herbicides and environmentally friendly control techniques for invasive alien plants. Full article
(This article belongs to the Section Phytochemistry)
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Review
Camphora officinarum (Syn. Cinnamomum camphora): Botany, Phytochemistry, Biological Activities, Agro-Industrial Applications, and Biotechnology
by Kamran Shah, Wenjun Dai, Qinyuan Shen, Yanjun Zhang, Junhan Guo, Jiashuang Qiao, Jiaxin Hu, Liangye Huang, Daoliang Yan, Yongjun Wang, Jianfang Zuo, Yuanyuan Li, Huwei Yuan and Bingsong Zheng
Plants 2026, 15(10), 1467; https://doi.org/10.3390/plants15101467 - 12 May 2026
Viewed by 672
Abstract
Camphora officinarum (syn. Cinnamomum camphora) is an ecologically, medicinally, and economically important tree species widely known for its essential oils (EOs), timber, and long history of use in traditional medicine. In recent years, renewed interest in this species has been driven by [...] Read more.
Camphora officinarum (syn. Cinnamomum camphora) is an ecologically, medicinally, and economically important tree species widely known for its essential oils (EOs), timber, and long history of use in traditional medicine. In recent years, renewed interest in this species has been driven by taxonomic revision, the discovery of chemically distinct chemotypes, and advances in genomics, metabolomics, and biotechnological processing. This review summarizes current knowledge on the botany, distribution, phytochemistry, biological properties, agro-industrial value, and biotechnological potential of C. officinarum. Particular attention is given to the genetic and metabolic basis of terpene diversity, especially the role of terpene synthase (TPS) gene expansion in the formation of camphor-, linalool-, borneol-, cineole-, and citral-type profiles. We also discuss developments in essential oil extraction, the utilization of non-volatile constituents such as flavonoids and lignans, and the nutritional value of seed kernel oil rich in medium-chain fatty acids (MCFAs). In addition, recent progress in tissue culture, multi-omics analysis, metabolic engineering, and nano-enabled delivery systems is reviewed. The paper also considers important safety and ecological issues, including the dose-dependent toxicity of camphor and the contrasting status of the species as a protected native resource in East Asia and an invasive plant in some introduced regions. Overall, this review provides an updated and balanced overview of C. officinarum, identifies key knowledge gaps, and highlights future prospects for sustainable utilization, conservation of native genetic resources, and exploitative control of invasive populations. Full article
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