Search Results (1,389)

Probiotic lactic acid bacteria are widely recognized for their health-promoting effects. However, the use of live microorganisms may pose safety concerns and stability limitations. Consequently, postbiotics, defined as inactivated microbial cells and/or their components, have emerged as a promising alternative. This study integrates genome-guided evaluation of probiotic potential, experimental validation of in silico predictions and process optimization for the production of inactivated Lactiplantibacillus plantarum DM1 and KK1 cells as postbiotics. Genome mining identified genes and gene clusters associated with metabolic versatility, antimicrobial activity, gastrointestinal stress tolerance, adhesion and prebiotic substrate utilization. Building on these findings, to generate postbiotics, the efficiency of thermal, enzymatic, mechanical and radiation-based inactivation methods was evaluated in bacterial suspensions prepared in three dairy by-product matrices: milk permeate, sweet whey and sour whey. Complete inactivation of both strain cells was achieved by thermal treatment (3 min pasteurization), γ-irradiation (3 kGy), and combined lysozyme–pasteurization treatment, whereas other treatments showed partial and matrix-dependent effects. Matrix composition significantly influenced treatment efficacy, suggesting a protective role of food components used. These findings highlight the importance of combining genome mining for potential probiotic strain characterization with robust, matrix-adapted inactivation strategies for the development of stable postbiotic formulations. Full article

In resource-poor sandy habitats, alien plant co-invasion often triggers intense belowground competition mediated by rhizosphere microorganisms. However, the mechanisms by which these plants overcome nutrient limitations remain unclear. Here, we conducted an eight-month in situ monitoring of single- and co-invasion plots of Solanum rostratum and Cenchrus pauciflorus Benth. in the Horqin Sandy Land. By integrating soil enzyme assays with 16S rRNA and internal transcribed spacer (ITS) amplicon sequencing, we characterized their rhizosphere microbial community assembly. Co-invasion exposed both species to convergent biotic stress, characterized by the significant enrichment of the pathogenic fungi Didymella and Pseudogymnoascus (linear discriminant analysis (LDA) > 4.0). To mitigate these pressures, the dominant competitor, S. rostratum, specifically recruited a cross-kingdom phosphate-solubilizing consortium comprising Bacillus and Penicillium (LDA > 4.0). This targeted recruitment significantly enhanced rhizosphere activities, increasing phosphatase and sucrase to 86.10 U/g and 2.17 U/g, respectively, thereby maintaining available phosphorus at a high level (35.55 mg/kg). Conversely, the subordinate competitor, C. pauciflorus, lost key native stress-resistant bacteria such as Rubrobacter (relative abundance dropping from 5.39% to 3.27%) and failed to recruit effective microbes, leading to the rapid depletion of available phosphorus (dropping to 21.38 mg/kg). Ultimately, under dual nutrient and pathogenic stress, the precise recruitment and functional integration of cross-kingdom phosphate-solubilizing microbes are strongly linked to the divergent belowground competitive outcomes between these co-invading plants. Full article

This review examines the functional role of lactic acid bacteria (LAB) and Bifidobacteria in modulating host physiology through interconnected metabolic, immune, and neuroendocrine pathways. These effects are particularly relevant in gastrointestinal diseases, where dysbiosis is associated not only with local intestinal dysfunction but also with systemic conditions, including metabolic syndrome, infections and complications in immunocompromised individuals. LAB and Bifidobacteria play key roles through the production of short-chain fatty acids, which contribute to maintaining intestinal barrier integrity, regulating lipid and glucose metabolism, improving insulin sensitivity, and exerting anti-inflammatory effects that may reduce the risk of metabolic disorders. Beyond metabolic regulation, the review explores the emerging concept of psychobiotics, focusing on how probiotic bacteria modulate host physiology through integrated metabolic, immune and neuroendocrine mechanisms. Current evidence suggests that these effects are highly strain-specific and influenced by dosage and study design, and host-related factors, often arising indirectly through complex host-microbe interactions rather than direct neurotransmitter activity. Although increasing evidence links these microorganisms to stress regulation, mood, and cognitive function, findings from human studies remain inconsistent. Therefore, well-designed clinical trials, combined with multi-omics approaches, are needed to clarify underlying mechanisms and substantiate clinical efficacy. Overall, probiotics-based strategies offer a promising and practical approach to supporting metabolic health and general psychological well-being through functional foods. Full article

Emerging research highlights the complex interplay between the gut microbiome, skin health, and environmental exposures, forming what is now recognized as the gut–skin–exposome axis. This narrative review explores the role of gut microbiome dysbiosis—a disruption in the balance of intestinal microorganisms—in the pathogenesis and progression of various non-communicable inflammatory skin diseases, including acne, atopic dermatitis, psoriasis, rosacea, systemic lupus erythematosus, chronic spontaneous urticaria, hidradenitis suppurativa, and alopecia areata. This review synthesizes mechanistic studies, clinical trials, and Mendelian randomization data to elucidate how altered gut microbial composition contributes to systemic and cutaneous inflammation. Key modifiable factors, such as diet, antibiotics, stress, and sleep, as well as interventions like probiotics, prebiotics, synbiotics, and fecal microbiota transplantation, are discussed for their potential therapeutic value. By integrating clinical insights with microbiome science, this review underscores the importance of a holistic, systems-based approach in managing inflammatory skin diseases, offering clinicians evidence-based strategies to improve patient outcomes through gut microbiome modulation. Full article

Global crop production faces serious threats from soil salinization. Microbial resources are often exploited to be used as fertilizers or seed coatings to address this issue. Parametarhizium changbaiense, as a novel beneficial microorganism, has been discovered to be capable of assisting limited crops such as mung bean in resisting salt–alkali stress. To investigate the effects of P. changbaiense on sugar beet under salt–alkali stress, the salt (NaCl:Na₂SO₄, molar ratio 9:1) and alkali (NaHCO₃:Na₂CO₃, molar ratio 9:1) stress were set on sugar beet germplasm 780016B. Results demonstrated that P. changbaiense improved the phenotypic characteristics of sugar beet seedlings under salt–alkali stress. The biomass parameters such as plant height and fresh weight significantly increased by growth-promoting effect. The elevated antioxidant enzyme activity could help protect plants from ROS damage induced by stress. Relative electrical conductivity and MDA content decreased with inoculation, thereby mitigating membrane lipid peroxidation and improving membrane system stability. The higher content of soluble sugar could maintain cell turgor pressure and alleviate osmotic stress. Inoculation with P. changbaiense enhanced chlorophyll content, fluorescence, and photosynthetic capacity. The more superior root vitality and architecture were suitable for the functions of metabolism and absorption. P. changbaiense could promote the growth and physiological characteristics under salt–alkali stress, so it has practical application value in agricultural production. Full article

Autofluorescence of microorganisms has emerged as a potential tool in diagnostics. However, the temporal behaviour of fungal autofluorescence and its objective quantitative evaluation remain insufficiently characterised. The present in vitro study investigated the temporal dynamics of autofluorescence in 16 reference fungal strains under 405 nm laser excitation, with a particular focus on quantitative colour analysis. Standardised fungal suspensions were cultured on Sabouraud dextrose agar and imaged after 24–168 h of incubation. Fluorescence images were acquired during excitation with a 405 nm diode laser. The images were analysed in ImageJ using the HSV colour model, with the mean hue value of the colony used as the primary quantitative parameter. Multifactorial ANOVA demonstrated significant effects of fungal strain and strain × time interaction on hue values (p < 0.001), whereas time alone was not significant. Most strains exhibited a progressive decrease in mean hue during cultivation, although strain-specific temporal patterns were observed. Blastoschizomyces capitatus maintained a stable high mean hue throughout the observation, while Candida guilliermondii showed a marked increase after 168 h. These findings underline the strain- and time-dependent nature of fungal autofluorescence and the importance of standardised imaging conditions not only for its potential diagnostic application but also for its use as an experimental tool in studies of fungal metabolism or stress responses. Full article

Salt stress remains a major global stress factor among abiotic stresses limiting crop production. Salt stress is a major nutritional challenge, with poor agricultural production characterized by high soil sodium (Na⁺) levels in soil and plants. Soil salinity negatively affects plants through both osmotic effects and ionic toxicity. Hence, one of the main aims of agricultural scientists is to develop eco-friendly, sustainable solutions to alleviate soil salinity. Over the past decades, several studies have recommended biochar as a vital sustainable soil amendment to alleviate the negative consequences of soil salinity. Thus, this review builds on the literature on biochar-mediated alleviation of salt stress. Biochar is a carbon-rich material produced from biomass and feedstock via pyrolysis under little or no oxygen conditions. Due to its unique characteristics, such as high carbon, high surface area with porous and aromatic structure, high pH, high stability, cation exchange capacity, and water and nutrient retention capacity, it is considered an alternative for salt stress alleviation. Moreover, biochar facilitates sodium ion (Na⁺) adsorption, reduces Na⁺ uptake, and increases potassium ion (K⁺) uptake, enhancing nutrient cycling, helping plants maintain ionic balance and osmotic regulation. This, in turn, significantly increased the activity and diversity of soil microorganisms, enhanced their adhesion, and promoted their growth, thereby strengthening the plant’s salt resistance. Moreover, biochar-mediated improvements in microbial community dynamics and changes in the physical and biological properties of soil contribute to overall plant and soil health under salt stress. Hence, the present review aims to decipher the holistic patterns of biochar on soil and plant health, changes in physiological and defense mechanisms, plant hormones and signaling mechanisms, and the status of modified biochar under salt stress. Thus, the present review will pave the way for the production of salt-resilient crops with enhanced salinity tolerance. In conclusion, the use of biochar-based fertilizers and modified biochar enhanced microbial community dynamics in soil health homeostasis and soil fertility for agricultural production and food security. Full article

Cadmium (Cd) and polystyrene (PS) microplastic co-contamination in agricultural soils poses a potential threat to food security. Some functional microorganisms in soil can alleviate the dual stress of Cd and PS on crops. In this study, a biofilm-forming bacterium, Enterobacter sp. W5, was isolated from heavy metal-contaminated rhizosphere soil. Strain W5 exhibited Cd removal efficiency (46.3%) and strong biofilm-forming capacity (OD₅₇₀ = 5.05), and it effectively colonized PS microplastic surfaces. XPS analysis detected bacterial functional groups (C–O–C, C=O) and PS-associated signals (O–C=O), which may act synergistically in Cd²⁺ adsorption. Furthermore, XPS and XRD analyses revealed the presence of Cd-containing precipitates (including CdS, CdO, and Cd₃(PO₄)₂). In hydroponic wheat experiments, W5 inoculation alleviated Cd-PS combined stress, thus significantly promoting plant growth and reducing Cd accumulation by 22.6% in roots and by 34.2% in aboveground tissues. Subcellular distribution analysis revealed that W5 enhanced Cd retention in root cell walls, thereby limiting its translocation to active cellular compartments. Proteomic analysis identified a set of 11 consistently downregulated proteins, including A0A3B6HQ68 and A0A3B6KJV9, which were enriched in secondary metabolite biosynthesis pathways. Bioinformatic analysis suggests that these proteins may be associated with Cd stress responses, though their exact roles remain to be verified. Collectively, this study provides a valuable microbial resource and mechanistic insights into the application of biofilm-forming bacteria for mitigating combined heavy metal–microplastic pollution in agricultural systems. Full article

Fungal contamination and the buildup of mycotoxins are ongoing threats to global food safety, especially in tropical areas where environmental conditions favor the growth of toxigenic fungi such as Aspergillus spp., Fusarium spp., and Penicillium spp. These toxins contaminate various food products and are linked to serious health problems, including liver toxicity, nerve toxicity, immune suppression, and cancer. Traditional methods to reduce these risks, such as chemical preservatives, heat treatments, and irradiation, have limited success in fully eliminating mycotoxins due to their stability, safety concerns, and declining consumer acceptance of synthetic additives. As a result, there is increasing interest in biological options that are safer and more sustainable. This review critically examines the potential of probiotic lactic acid bacteria (LAB) isolated from local fermented foods as multifunctional biocontrol agents that inhibit toxin-producing fungi, detoxify mycotoxins, and reduce cellular toxicity caused by these toxins. Scientific studies were retrieved from PubMed, ScienceDirect, Scopus, Web of Science, and Google Scholar, focusing on research published from 2011 to 2025 on antifungal activity, detoxification mechanisms, and cellular toxicology. The evidence shows that probiotic LAB employ various strategies, including producing organic acids, secreting bacteriocins, competing with fungi, adsorbing toxins onto their cell walls, and enzymatically transforming mycotoxins into less harmful substances. Recent findings also indicate that metabolites from LAB may influence oxidative stress, inflammation, and cell death in mammalian cells exposed to mycotoxins. Overall, probiotic LAB from native fermented foods offer promising biological approaches to improve food safety and reduce health risks associated with toxins. Future studies should focus on omics-based analysis of detoxification pathways, testing in real food systems, and translational research to support regulatory approval and large-scale use of probiotic-based strategies for mycotoxin control. Full article

Conservation tillage (CT) practices, including no-tillage and stover mulching, are increasingly recognized for their capacity to enhance soil health, sequester carbon, and mitigate greenhouse gas emissions in conventional agricultural systems. However, their application and mechanistic implications in medicinal crop cultivation—where soil quality directly influences not only yield but also the accumulation of pharmaceutically active secondary metabolites—remain underexplored. This review synthesizes recent advances in understanding how CT modulates soil microbial communities, with particular emphasis on nosZ II-type denitrifiers, to reduce nitrous oxide (N₂O) emissions and improve nitrogen use efficiency. The mechanistic pathways through which CT-induced changes in soil structure, moisture regimes, and organic matter dynamics influence the abundance, community composition, and activity of nitrogen-cycling microorganisms were examined. Based on evidence from black soil ecosystems and other agricultural systems, it is demonstrated that no-tillage with full stover mulching (NT100) selectively enriches specific nosZ II subclades (IIB, IIE, IIG) through deterministic community assembly processes, effectively decoupling N₂O emissions from nitrification activity. The implications of these soil improvements for medicinal plant growth, root development, nutrient acquisition, and stress tolerance were further explored, and case studies linking organic amendments, mycorrhizal associations, and microbial inoculants to enhanced accumulation of alkaloids, flavonoids, terpenoids, and saponins were synthesized. Importantly, findings from spatial phylogenetics and biocultural diversity research were integrated to examine how CT can support in situ conservation of medicinal flora and associated microbial communities in ethnomedicinally significant hotspots such as the Hengduan Mountains, southeastern Tibet, and subtropical refugia. Policy and community-based approaches for integrating CT into biocultural conservation strategies are discussed. By bridging agronomy, microbial ecology, phytochemistry, and ethnobotany, a framework for “eco-pharmacological” management is proposed, aligning sustainable soil practices with medicinal crop quality, climate mitigation, and the preservation of both biological and cultural heritage. Full article

Xanthophylls are oxygenated carotenoids widely distributed in photosynthetic microorganisms, plants, algae, and certain invertebrates, where they function as key photoprotective and antioxidant pigments. Among them, xanthophylls containing vicinal 1,2-diol moieties exhibit unique chemical reactivity that enables reversible coordination with boron species naturally present in marine and terrestrial environments. The formation of cyclic borate esters between boron and diol-containing xanthophylls induces structural and electronic modifications that may enhance pigment stability and functional performance. Emerging evidence suggests that boron–xanthophyll complexes display improved resistance to photooxidative degradation, enhanced singlet oxygen quenching capacity, and increased radical-scavenging activity compared with their uncomplexed counterparts. In addition, boron coordination can influence molecular conformation, polarity, and supramolecular organization within lipid bilayers, thereby promoting membrane stabilization under conditions of high light exposure and oxidative stress. Together, these effects indicate a cooperative role of boron complexation in amplifying the intrinsic photoprotective and antioxidant properties of xanthophylls. A deeper understanding of the structural basis and biological implications of boron–xanthophyll interactions may provide new insights into adaptive stress tolerance in marine and photosynthetic organisms, as well as guide the development of advanced photoprotective systems for biomedical and technological applications. Full article

Climate change, soil degradation, and the disruption of global nutrient cycles are placing unprecedented pressure on agricultural systems and global food security. These challenges are increasingly recognized as central concerns for planetary health, as agriculture simultaneously depends upon and alters critical Earth system processes. Microbe-based agricultural inputs (including biofertilizers, biostimulants, and biocontrol agents) have been widely promoted as climate-smart solutions capable of enhancing productivity, resilience, and environmental sustainability. However, despite rapid scientific and commercial advances, their performance in the field remains highly variable and strongly context-dependent. This review critically examines the evidence base underpinning climate-smart microbial solutions, with a particular focus on their capacity to confer climate resilience across diverse crops, soils, and climatic conditions. We synthesize current knowledge on the functional roles of beneficial microorganisms, including extremophilic and stress-adapted taxa, while highlighting key biological, technological, ecological, and socio-economic constraints that limit predictability and scalability. Special attention is given to evidence gaps related to long-term field performance, ecosystem-level impacts, and the trade-offs associated with widespread microbial deployment. We further assess recent innovations such as synthetic microbial consortia, microbiome engineering, advanced formulations, and data-driven decision tools. Then we highlight how these new technologies may address context dependency but still need validation under real-world conditions. Finally, we discuss policy, regulatory, and capacity-building considerations required to responsibly integrate microbial solutions into climate-smart agriculture frameworks. Overall, this review argues that microbial inoculants should be viewed not as universal inputs but as context-specific tools whose successful deployment depends on robust evidence, ecological sensitivity, and system-level integration. Advancing microbial solutions for agriculture will therefore require aligning technological innovation with broader planetary health objectives, ensuring that efforts to enhance agricultural productivity also support long-term ecosystem stability and resilience. Full article

The transition towards sustainable agri-food systems necessitates the development of effective and technologically advanced biofertilizers and biostimulants capable of reducing reliance on synthetic agrochemicals while enhancing crop productivity. Photosynthetic microorganisms, including cyanobacteria and microalgae, represent promising biological platforms owing to their extensive metabolic potential, their ability to synthesize high-value bioactive compounds, and, in certain cases, their capacity for atmospheric nitrogen fixation. These properties make them particularly valuable for enhancing plant growth and improving tolerance to abiotic and biotic stresses. In this study, a systematic review was conducted to identify diverse cyanobacterial and microalgal taxa with demonstrated roles in plant growth promotion and stress mitigation through multiple mechanisms and adaptive traits. A subset of these microorganisms was subsequently curated into a targeted database and subjected to bioinformatics analyses, leading to the identification of key metabolic pathways associated with stress response and plant growth promotion. Full article

As food demand increases, agricultural practices have evolved, prompting increased exploration of sustainable ecological techniques and utilization of plant-associated microorganisms. In this context, plant fitness has been enhanced by plant growth-promoting microorganisms (PGPM), which stimulate growth through direct mechanisms, such as improved nutrient availability and phytohormone production, as well as indirect mechanisms, including protection against phytopathogens and suppression of soil-borne diseases. However, these innate capabilities of PGPM can be further improved through genomic modification or editing. This article reviews advances in the genomic engineering of plant-beneficial microorganisms as tools to enhance their positive effects on crop performance and environmental remediation. The genetic modification strategies analyzed here include random mutagenesis, targeted genome editing (such as CRISPR-Cas), gene over-expression, genome shuffling, RNA interference, metabolic pathway engineering, and synthetic biology approaches. These tools have enabled the optimization of functions, such as nitrogen fixation, phosphate solubilization, secondary metabolite production, biocontrol, stress tolerance, and bioremediation. However, we propose expanding the discussion of their regulation and use in various countries. Additionally, these modifications must be efficient and safe for the beneficial microbiota associated with the target crop, as well as for humans, animals, and the environment, all of which depend on sustainable agricultural practices. Full article

Hydroponic (HP) and aquaponic (AQ) systems are widely known in greenhouse production; however, the combined effects of nutrient delivery system and substrate physical structure on crop performance and root-zone microbiomes remain insufficiently understood. Substrate physical properties influence water retention and aeration, which can affect root-associated microorganisms, plant growth, and yield. This study evaluated cucumber (Cucumis sativus L.) growth, yield, nutrient dynamics, physiological stress responses, and bacterial community composition under HP and AQ systems using bamboo-derived biochar substrates and coconut coir as a control. Vegetative growth was enhanced under AQ, with the greatest plant elongation (1102 ± 40.1 cm) and stem diameter (15.1 ± 1.0 mm) observed in biochar-grown plants. Total yield was consistently higher under AQ than HP, with the highest yield recorded in the coarse biochar treatment (28.6 kg m⁻²). Aquaponic systems were associated with greater nutrient availability under the conditions evaluated during mid to late season production, including nitrate concentrations of up to 226 mg L⁻¹. Physiological stress monitoring indicated lower stress exposure under aquaponic conditions in plants grown in medium and coarse biochar substrates across both systems, with 78 to 81% of the growing season classified within low to balanced stress conditions. Bacterial community composition was primarily shaped by cultivation system, which explained 19.3% of the observed variation, whereas substrate treatment did not significantly alter overall bacterial community structure. Overall, cultivation system was the dominant factor associated with variation in cucumber performance and root-zone bacterial communities, while biochar substrates supported improved plant growth, yield, and reduced physiological stress. Full article