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Keywords = medical imaging by HSI

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19 pages, 620 KiB  
Article
Software-Based Transformation of White Light Endoscopy Images to Hyperspectral Images for Improved Gastrointestinal Disease Detection
by Chien-Wei Huang, Chang-Chao Su, Chu-Kuang Chou, Arvind Mukundan, Riya Karmakar, Tsung-Hsien Chen, Pranav Shukla, Devansh Gupta and Hsiang-Chen Wang
Diagnostics 2025, 15(13), 1664; https://doi.org/10.3390/diagnostics15131664 - 30 Jun 2025
Viewed by 478
Abstract
Background/Objectives: Gastrointestinal diseases (GID), such as oesophagitis, polyps, and ulcerative colitis, contribute significantly to global morbidity and mortality. Conventional diagnostic methods employing white light imaging (WLI) in wireless capsule endoscopy (WCE) provide limited spectrum information, therefore influencing classification performance. Methods: A new technique [...] Read more.
Background/Objectives: Gastrointestinal diseases (GID), such as oesophagitis, polyps, and ulcerative colitis, contribute significantly to global morbidity and mortality. Conventional diagnostic methods employing white light imaging (WLI) in wireless capsule endoscopy (WCE) provide limited spectrum information, therefore influencing classification performance. Methods: A new technique called Spectrum Aided Vision Enhancer (SAVE), which converts traditional WLI images into hyperspectral imaging (HSI)-like representations, hence improving diagnostic accuracy. HSI involves the acquisition of image data across numerous wavelengths of light, extending beyond the visible spectrum, to deliver comprehensive information regarding the material composition and attributes of the imaged objects. This technique facilitates improved tissue characterisation, rendering it especially effective for identifying abnormalities in medical imaging. Using a carefully selected dataset consisting of 6000 annotated photos taken from the KVASIR and ETIS-Larib Polyp Database, this work classifies normal, ulcers, polyps, and oesophagitis. The performance of both the original WLI and SAVE transformed images was assessed using advanced deep learning architectures. The principal outcome was the overall classification accuracy for normal, ulcer, polyp, and oesophagitis categories, contrasting SAVE-enhanced images with standard WLI across five deep learning models. Results: The principal outcome of this study was the enhancement of diagnostic accuracy for gastrointestinal disease classification, assessed through classification accuracy, precision, recall, and F1 score. The findings illustrate the efficacy of the SAVE method in improving diagnostic performance without requiring specialised equipment. With the best accuracy of 98% attained using EfficientNetB7, compared to 97% with WLI, experimental data show that SAVE greatly increases classification metrics across all models. With relative improvement from 85% (WLI) to 92% (SAVE), VGG16 showed the highest accuracy. Conclusions: These results confirm that the SAVE algorithm significantly improves the early identification and classification of GID, therefore providing a potential development towards more accurate, non-invasive GID diagnostics with WCE. Full article
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48 pages, 6422 KiB  
Review
Modern Trends and Recent Applications of Hyperspectral Imaging: A Review
by Ming-Fang Cheng, Arvind Mukundan, Riya Karmakar, Muhamed Adil Edavana Valappil, Jumana Jouhar and Hsiang-Chen Wang
Technologies 2025, 13(5), 170; https://doi.org/10.3390/technologies13050170 - 23 Apr 2025
Cited by 4 | Viewed by 4425
Abstract
Hyperspectral imaging (HSI) is an advanced imaging technique that captures detailed spectral information across multiple fields. This review explores its applications in counterfeit detection, remote sensing, agriculture, medical imaging, cancer detection, environmental monitoring, mining, mineralogy, and food processing, specifically highlighting significant achievements from [...] Read more.
Hyperspectral imaging (HSI) is an advanced imaging technique that captures detailed spectral information across multiple fields. This review explores its applications in counterfeit detection, remote sensing, agriculture, medical imaging, cancer detection, environmental monitoring, mining, mineralogy, and food processing, specifically highlighting significant achievements from the past five years, providing a timely update across several fields. It also presents a cross-disciplinary classification framework to systematically categorize applications in medical, agriculture, environment, and industry. In counterfeit detection, HSI identified fake currency with high accuracy in the 400–500 nm range and achieved a 99.03% F1-score for counterfeit alcohol detection. Remote sensing applications include hyperspectral satellites, which improve forest classification accuracy by 50%, and soil organic matter, with the prediction reaching R2 = 0.6. In agriculture, the HSI-TransUNet model achieved 86.05% accuracy for crop classification, and disease detection reached 98.09% accuracy. Medical imaging benefits from HSI’s non-invasive diagnostics, distinguishing skin cancer with 87% sensitivity and 88% specificity. In cancer detection, colorectal cancer identification reached 86% sensitivity and 95% specificity. Environmental applications include PM2.5 pollution detection with 85.93% accuracy and marine plastic waste detection with 70–80% accuracy. In food processing, egg freshness prediction achieved R2 = 91%, and pine nut classification reached 100% accuracy. Despite its advantages, HSI faces challenges like high costs and complex data processing. Advances in artificial intelligence and miniaturization are expected to improve accessibility and real-time applications. Future advancements are anticipated to concentrate on the integration of deep learning models for automated feature extraction and decision-making in hyperspectral imaging analysis. The development of lightweight, portable HSI devices will enable more on-site applications in agriculture, healthcare, and environmental monitoring. Moreover, real-time processing methods will enhance efficiency for field deployment. These improvements seek to enhance the accessibility, practicality, and efficacy of HSI in both industrial and clinical environments. Full article
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14 pages, 3045 KiB  
Article
Burn Wound Dynamics Measured with Hyperspectral Imaging
by Thomas Wild, Jörg Marotz, Ahmed Aljowder and Frank Siemers
Eur. Burn J. 2025, 6(1), 7; https://doi.org/10.3390/ebj6010007 - 13 Feb 2025
Viewed by 678
Abstract
Introduction: Hyperspectral Imaging (HSI) combined with an augmented model-based data processing enables the measurement of the depth-resolved perfusion of burn wounds. With these methods, the fundamental problem of the wound dynamics (wound conversion or progression) in the first 4 days should be parametrically [...] Read more.
Introduction: Hyperspectral Imaging (HSI) combined with an augmented model-based data processing enables the measurement of the depth-resolved perfusion of burn wounds. With these methods, the fundamental problem of the wound dynamics (wound conversion or progression) in the first 4 days should be parametrically analyzed and evaluated. Material and Methods: From a cohort of 59 patients with burn injuries requiring medical intervention, 281 homogenous wound segments were selected and subjected to clinical classification based on the duration of healing. The classification was retrospectively assigned to each segment during the period from day 0 to day 2 post-burn. The perfusion parameters were presented in two parameter spaces describing the upper and deeper perfusion. Results: The investigation of value distributions within the parameter spaces pertaining to four distinct categories of damage from superficial dermal to full-thickness burns during the initial four days reveals the inherent variability and distinct patterns associated with wound progression, depending on the severity of damage. The analysis highlights the challenges associated with estimating the burn degrees during this early stage and elucidates the significance of deeper tissue perfusion in the classification process, which cannot be discerned through visual inspections. Conclusions: The feasibility of early classification on day 0 or 1 was assessed, and the findings indicate a restricted level of reliability, particularly on day 0, primarily due to the substantial variability observed in wound characteristics and inherent dynamics. Full article
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14 pages, 3635 KiB  
Article
Precision Imaging for Early Detection of Esophageal Cancer
by Po-Chun Yang, Chien-Wei Huang, Riya Karmakar, Arvind Mukundan, Tsung-Hsien Chen, Chu-Kuang Chou, Kai-Yao Yang and Hsiang-Chen Wang
Bioengineering 2025, 12(1), 90; https://doi.org/10.3390/bioengineering12010090 - 20 Jan 2025
Cited by 4 | Viewed by 1928
Abstract
Early detection of early-stage esophageal cancer (ECA) is crucial for timely intervention and improved treatment outcomes. Hyperspectral imaging (HSI) and artificial intelligence (AI) technologies offer promising avenues for enhancing diagnostic accuracy in this context. This study utilized a dataset comprising 3984 white light [...] Read more.
Early detection of early-stage esophageal cancer (ECA) is crucial for timely intervention and improved treatment outcomes. Hyperspectral imaging (HSI) and artificial intelligence (AI) technologies offer promising avenues for enhancing diagnostic accuracy in this context. This study utilized a dataset comprising 3984 white light images (WLIs) and 3666 narrow-band images (NBIs). We employed the Yolov5 model, a state-of-the-art object detection algorithm, to predict early ECA based on the provided images. The dataset was divided into two subsets: RGB-WLIs and NBIs, and four distinct models were trained using these datasets. The experimental results revealed that the prediction performance of the training model was notably enhanced when using HSI compared to general NBI training. The HSI training model demonstrated an 8% improvement in accuracy, along with a 5–8% enhancement in precision and recall measures. Notably, the model trained with WLIs exhibited the most significant improvement. Integration of HSI with AI technologies improves the prediction performance for early ECA detection. This study underscores the potential of deep learning identification models to aid in medical detection research. Integrating these models with endoscopic diagnostic systems in healthcare settings could offer faster and more accurate results, thereby improving overall detection performance. Full article
(This article belongs to the Special Issue Machine Learning and Deep Learning Applications in Healthcare)
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16 pages, 4169 KiB  
Article
Evaluating Normalization Methods for Robust Spectral Performance Assessments of Hyperspectral Imaging Cameras
by Siavash Mazdeyasna, Mohammed Shahriar Arefin, Andrew Fales, Silas J. Leavesley, T. Joshua Pfefer and Quanzeng Wang
Biosensors 2025, 15(1), 20; https://doi.org/10.3390/bios15010020 - 4 Jan 2025
Cited by 3 | Viewed by 2283
Abstract
Hyperspectral imaging (HSI) technology, which offers both spatial and spectral information, holds significant potential for enhancing diagnostic performance during endoscopy and other medical procedures. However, quantitative evaluation of HSI cameras is challenging due to various influencing factors (e.g., light sources, working distance, and [...] Read more.
Hyperspectral imaging (HSI) technology, which offers both spatial and spectral information, holds significant potential for enhancing diagnostic performance during endoscopy and other medical procedures. However, quantitative evaluation of HSI cameras is challenging due to various influencing factors (e.g., light sources, working distance, and illumination angle) that can alter the reflectance spectra of the same target as these factors vary. Towards robust, universal test methods, we evaluated several data normalization methods aimed at minimizing the impact of these factors. Using a high-resolution HSI camera, we measured the reflectance spectra of diffuse reflectance targets illuminated by two different light sources. These spectra, along with the reference spectra from the target manufacturer, were normalized with nine different methods (e.g., area under the curve, standard normal variate, and centering power methods), followed by a uniform scaling step. We then compared the measured spectra to the reference to evaluate the capability of each normalization method in ensuring a consistent, standardized performance evaluation. Our results demonstrate that normalization can mitigate the impact of some factors during HSI camera evaluation, with performance varying across methods. Generally, noisy spectra pose challenges for normalization methods that rely on limited reflectance values, while methods based on reflectance values across the entire spectrum (such as standard normal variate) perform better. The findings also suggest that absolute reflectance spectral measurements may be less effective for clinical diagnostics, whereas normalized spectral measurements are likely more appropriate. These findings provide a foundation for standardized performance testing of HSI-based medical devices, promoting the adoption of high-quality HSI technology for critical applications such as early cancer detection. Full article
(This article belongs to the Special Issue Advanced Materials in Nano-Photonics and Biosensor Systems)
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14 pages, 2601 KiB  
Article
Endoscopic In Vivo Hyperspectral Imaging for Head and Neck Tumor Surgeries Using a Medically Approved CE-Certified Camera with Rapid Visualization During Surgery
by Ayman Bali, Thomas Bitter, Marcela Mafra, Jonas Ballmaier, Mussab Kouka, Gerlind Schneider, Anna Mühlig, Nadja Ziller, Theresa Werner, Ferdinand von Eggeling, Orlando Guntinas-Lichius and David Pertzborn
Cancers 2024, 16(22), 3785; https://doi.org/10.3390/cancers16223785 - 10 Nov 2024
Cited by 2 | Viewed by 1822
Abstract
Background: In vivo visualization of malignant tumors remains the main challenge during head and neck cancer surgery. This can result in inadequate tumor margin assessment and incomplete tumor resection, adversely affecting patient outcomes. Hyperspectral imaging (HSI) is a promising approach to address [...] Read more.
Background: In vivo visualization of malignant tumors remains the main challenge during head and neck cancer surgery. This can result in inadequate tumor margin assessment and incomplete tumor resection, adversely affecting patient outcomes. Hyperspectral imaging (HSI) is a promising approach to address this issue. However, its application in surgery has been limited by the lack of medically approved HSI devices compliant with MDR regulations, as well as challenges regarding the integration into the surgical workflow. Methods: In this feasibility study, we employed endoscopic HSI during surgery to visualize the tumor sites of 12 head and neck cancer patients. We optimized the HSI workflow to minimize time required during surgery and to reduce the adaptation period needed for surgeons to adjust to the new workflow. Additionally, we implemented data processing to enable real-time classification and visualization of HSI within the intraoperative setting. HSI evaluation was conducted using principal component analysis and k-means clustering, with this clustering validated through comparison with expert annotations. Results: Our complete HSI workflow requires two to three minutes, with each HSI measurement—including evaluation and visualization—taking less than 10 s, achieving an accuracy of 79%, sensitivity of 72%, and specificity of 84%. Medical personnel became proficient with the HSI system after two surgeries. Conclusions: This study presents an HSI workflow for in vivo tissue differentiation during head and neck cancer surgery, providing accurate and visually accessible results within minimal time. This approach enhances the in vivo evaluation of tumor margins, leading to more clear margins and, consequently, improved patient outcomes. Full article
(This article belongs to the Section Methods and Technologies Development)
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32 pages, 5975 KiB  
Review
Synergy between Artificial Intelligence and Hyperspectral Imagining—A Review
by Svetlana N. Khonina, Nikolay L. Kazanskiy, Ivan V. Oseledets, Artem V. Nikonorov and Muhammad A. Butt
Technologies 2024, 12(9), 163; https://doi.org/10.3390/technologies12090163 - 13 Sep 2024
Cited by 17 | Viewed by 7057
Abstract
The synergy between artificial intelligence (AI) and hyperspectral imaging (HSI) holds tremendous potential across a wide array of fields. By leveraging AI, the processing and interpretation of the vast and complex data generated by HSI are significantly enhanced, allowing for more accurate, efficient, [...] Read more.
The synergy between artificial intelligence (AI) and hyperspectral imaging (HSI) holds tremendous potential across a wide array of fields. By leveraging AI, the processing and interpretation of the vast and complex data generated by HSI are significantly enhanced, allowing for more accurate, efficient, and insightful analysis. This powerful combination has the potential to revolutionize key areas such as agriculture, environmental monitoring, and medical diagnostics by providing precise, real-time insights that were previously unattainable. In agriculture, for instance, AI-driven HSI can enable more precise crop monitoring and disease detection, optimizing yields and reducing waste. In environmental monitoring, this technology can track changes in ecosystems with unprecedented detail, aiding in conservation efforts and disaster response. In medical diagnostics, AI-HSI could enable earlier and more accurate disease detection, improving patient outcomes. As AI algorithms advance, their integration with HSI is expected to drive innovations and enhance decision-making across various sectors. The continued development of these technologies is likely to open new frontiers in scientific research and practical applications, providing more powerful and accessible tools for a wider range of users. Full article
(This article belongs to the Section Assistive Technologies)
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18 pages, 3428 KiB  
Article
Assessing the Efficacy of the Spectrum-Aided Vision Enhancer (SAVE) to Detect Acral Lentiginous Melanoma, Melanoma In Situ, Nodular Melanoma, and Superficial Spreading Melanoma
by Teng-Li Lin, Chun-Te Lu, Riya Karmakar, Kalpana Nampalley, Arvind Mukundan, Yu-Ping Hsiao, Shang-Chin Hsieh and Hsiang-Chen Wang
Diagnostics 2024, 14(15), 1672; https://doi.org/10.3390/diagnostics14151672 - 1 Aug 2024
Cited by 19 | Viewed by 2408
Abstract
Skin cancer is the predominant form of cancer worldwide, including 75% of all cancer cases. This study aims to evaluate the effectiveness of the spectrum-aided visual enhancer (SAVE) in detecting skin cancer. This paper presents the development of a novel algorithm for snapshot [...] Read more.
Skin cancer is the predominant form of cancer worldwide, including 75% of all cancer cases. This study aims to evaluate the effectiveness of the spectrum-aided visual enhancer (SAVE) in detecting skin cancer. This paper presents the development of a novel algorithm for snapshot hyperspectral conversion, capable of converting RGB images into hyperspectral images (HSI). The integration of band selection with HSI has facilitated the identification of a set of narrow band images (NBI) from the RGB images. This study utilizes various iterations of the You Only Look Once (YOLO) machine learning (ML) framework to assess the precision, recall, and mean average precision in the detection of skin cancer. YOLO is commonly preferred in medical diagnostics due to its real-time processing speed and accuracy, which are essential for delivering effective and efficient patient care. The precision, recall, and mean average precision (mAP) of the SAVE images show a notable enhancement in comparison to the RGB images. This work has the potential to greatly enhance the efficiency of skin cancer detection, as well as improve early detection rates and diagnostic accuracy. Consequently, it may lead to a reduction in both morbidity and mortality rates. Full article
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18 pages, 5228 KiB  
Article
Acne Detection Based on Reconstructed Hyperspectral Images
by Ali Mohammed Ridha, Nor Ashidi Mat Isa and Ayman Tawfik
J. Imaging 2024, 10(8), 174; https://doi.org/10.3390/jimaging10080174 - 23 Jul 2024
Cited by 1 | Viewed by 2603
Abstract
Acne Vulgaris is a common type of skin disease that affects more than 85% of teenagers and frequently continues even in adulthood. While it is not a dangerous skin disease, it can significantly impact the quality of life. Hyperspectral imaging (HSI), which captures [...] Read more.
Acne Vulgaris is a common type of skin disease that affects more than 85% of teenagers and frequently continues even in adulthood. While it is not a dangerous skin disease, it can significantly impact the quality of life. Hyperspectral imaging (HSI), which captures a wide spectrum of light, has emerged as a tool for the detection and diagnosis of various skin conditions. However, due to the high cost of specialised HS cameras, it is limited in its use in clinical settings. In this research, a novel acne detection system that will utilise reconstructed hyperspectral (HS) images from RGB images is proposed. A dataset of reconstructed HS images is created using the best-performing HS reconstruction model from our previous research. A new acne detection algorithm that is based on reconstructed HS images and RetinaNet algorithm is introduced. The results indicate that the proposed algorithm surpasses other techniques based on RGB images. Additionally, reconstructed HS images offer a promising and cost-effective alternative to using expensive HSI equipment for detecting conditions like acne or other medical issues. Full article
(This article belongs to the Section Color, Multi-spectral, and Hyperspectral Imaging)
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13 pages, 1906 KiB  
Article
Evaluation of Spectrum-Aided Visual Enhancer (SAVE) in Esophageal Cancer Detection Using YOLO Frameworks
by Chu-Kuang Chou, Riya Karmakar, Yu-Ming Tsao, Lim Wei Jie, Arvind Mukundan, Chien-Wei Huang, Tsung-Hsien Chen, Chau-Yuan Ko and Hsiang-Chen Wang
Diagnostics 2024, 14(11), 1129; https://doi.org/10.3390/diagnostics14111129 - 29 May 2024
Cited by 8 | Viewed by 1879
Abstract
The early detection of esophageal cancer presents a substantial difficulty, which contributes to its status as a primary cause of cancer-related fatalities. This study used You Only Look Once (YOLO) frameworks, specifically YOLOv5 and YOLOv8, to predict and detect early-stage EC by using [...] Read more.
The early detection of esophageal cancer presents a substantial difficulty, which contributes to its status as a primary cause of cancer-related fatalities. This study used You Only Look Once (YOLO) frameworks, specifically YOLOv5 and YOLOv8, to predict and detect early-stage EC by using a dataset sourced from the Division of Gastroenterology and Hepatology, Ditmanson Medical Foundation, Chia-Yi Christian Hospital. The dataset comprised 2741 white-light images (WLI) and 2741 hyperspectral narrowband images (HSI-NBI). They were divided into 60% training, 20% validation, and 20% test sets to facilitate robust detection. The images were produced using a conversion method called the spectrum-aided vision enhancer (SAVE). This algorithm can transform a WLI into an NBI without requiring a spectrometer or spectral head. The main goal was to identify dysplasia and squamous cell carcinoma (SCC). The model’s performance was evaluated using five essential metrics: precision, recall, F1-score, mAP, and the confusion matrix. The experimental results demonstrated that the HSI model exhibited improved learning capabilities for SCC characteristics compared with the original RGB images. Within the YOLO framework, YOLOv5 outperformed YOLOv8, indicating that YOLOv5’s design possessed superior feature-learning skills. The YOLOv5 model, when used in conjunction with HSI-NBI, demonstrated the best performance. It achieved a precision rate of 85.1% (CI95: 83.2–87.0%, p < 0.01) in diagnosing SCC and an F1-score of 52.5% (CI95: 50.1–54.9%, p < 0.01) in detecting dysplasia. The results of these figures were much better than those of YOLOv8. YOLOv8 achieved a precision rate of 81.7% (CI95: 79.6–83.8%, p < 0.01) and an F1-score of 49.4% (CI95: 47.0–51.8%, p < 0.05). The YOLOv5 model with HSI demonstrated greater performance than other models in multiple scenarios. This difference was statistically significant, suggesting that the YOLOv5 model with HSI significantly improved detection capabilities. Full article
(This article belongs to the Special Issue Advancements in Diagnosis and Prognosis of Gastrointestinal Diseases)
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19 pages, 19883 KiB  
Article
HyperVein: A Hyperspectral Image Dataset for Human Vein Detection
by Henry Ndu, Akbar Sheikh-Akbari, Jiamei Deng and Iosif Mporas
Sensors 2024, 24(4), 1118; https://doi.org/10.3390/s24041118 - 8 Feb 2024
Cited by 5 | Viewed by 4114
Abstract
HyperSpectral Imaging (HSI) plays a pivotal role in various fields, including medical diagnostics, where precise human vein detection is crucial. HyperSpectral (HS) image data are very large and can cause computational complexities. Dimensionality reduction techniques are often employed to streamline HS image data [...] Read more.
HyperSpectral Imaging (HSI) plays a pivotal role in various fields, including medical diagnostics, where precise human vein detection is crucial. HyperSpectral (HS) image data are very large and can cause computational complexities. Dimensionality reduction techniques are often employed to streamline HS image data processing. This paper presents a HS image dataset encompassing left- and right-hand images captured from 100 subjects with varying skin tones. The dataset was annotated using anatomical data to represent vein and non-vein areas within the images. This dataset is utilised to explore the effectiveness of dimensionality reduction techniques, namely: Principal Component Analysis (PCA), Folded PCA (FPCA), and Ward’s Linkage Strategy using Mutual Information (WaLuMI) for vein detection. To generate experimental results, the HS image dataset was divided into train and test datasets. Optimum performing parameters for each of the dimensionality reduction techniques in conjunction with the Support Vector Machine (SVM) binary classification were determined using the Training dataset. The performance of the three dimensionality reduction-based vein detection methods was then assessed and compared using the test image dataset. Results show that the FPCA-based method outperforms the other two methods in terms of accuracy. For visualization purposes, the classification prediction image for each technique is post-processed using morphological operators, and results show the significant potential of HS imaging in vein detection. Full article
(This article belongs to the Section Sensing and Imaging)
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13 pages, 4174 KiB  
Article
Optical Identification of Diabetic Retinopathy Using Hyperspectral Imaging
by Ching-Yu Wang, Arvind Mukundan, Yu-Sin Liu, Yu-Ming Tsao, Fen-Chi Lin, Wen-Shuang Fan and Hsiang-Chen Wang
J. Pers. Med. 2023, 13(6), 939; https://doi.org/10.3390/jpm13060939 - 1 Jun 2023
Cited by 12 | Viewed by 4616
Abstract
The severity of diabetic retinopathy (DR) is directly correlated to changes in both the oxygen utilization rate of retinal tissue as well as the blood oxygen saturation of both arteries and veins. Therefore, the current stage of DR in a patient can be [...] Read more.
The severity of diabetic retinopathy (DR) is directly correlated to changes in both the oxygen utilization rate of retinal tissue as well as the blood oxygen saturation of both arteries and veins. Therefore, the current stage of DR in a patient can be identified by analyzing the oxygen content in blood vessels through fundus images. This enables medical professionals to make accurate and prompt judgments regarding the patient’s condition. However, in order to use this method to implement supplementary medical treatment, blood vessels under fundus images need to be determined first, and arteries and veins then need to be differentiated from one another. Therefore, the entire study was split into three sections. After first removing the background from the fundus images using image processing, the blood vessels in the images were then separated from the background. Second, the method of hyperspectral imaging (HSI) was utilized in order to construct the spectral data. The HSI algorithm was utilized in order to perform analysis and simulations on the overall reflection spectrum of the retinal image. Thirdly, principal component analysis (PCA) was performed in order to both simplify the data and acquire the major principal components score plot for retinopathy in arteries and veins at all stages. In the final step, arteries and veins in the original fundus images were separated using the principal components score plots for each stage. As retinopathy progresses, the difference in reflectance between the arteries and veins gradually decreases. This results in a more difficult differentiation of PCA results in later stages, along with decreased precision and sensitivity. As a consequence of this, the precision and sensitivity of the HSI method in DR patients who are in the normal stage and those who are in the proliferative DR (PDR) stage are the highest and lowest, respectively. On the other hand, the indicator values are comparable between the background DR (BDR) and pre-proliferative DR (PPDR) stages due to the fact that both stages exhibit comparable clinical-pathological severity characteristics. The results indicate that the sensitivity values of arteries are 82.4%, 77.5%, 78.1%, and 72.9% in the normal, BDR, PPDR, and PDR, while for veins, these values are 88.5%, 85.4%, 81.4%, and 75.1% in the normal, BDR, PPDR, and PDR, respectively. Full article
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10 pages, 1714 KiB  
Article
In Vitro Antibody Quantification with Hyperspectral Imaging in a Large Field of View for Clinical Applications
by Martina De Landro, Lorenzo Cinelli, Nicola Marchese, Giulia Spano, Manuel Barberio, Cindy Vincent, Jacques Marescaux, Didier Mutter, Michel De Mathelin, Sylvain Gioux, Eric Felli, Paola Saccomandi and Michele Diana
Bioengineering 2023, 10(3), 370; https://doi.org/10.3390/bioengineering10030370 - 17 Mar 2023
Cited by 3 | Viewed by 2256
Abstract
Hyperspectral imaging (HSI) is a non-invasive, contrast-free optical-based tool that has recently been applied in medical and basic research fields. The opportunity to use HSI to identify exogenous tumor markers in a large field of view (LFOV) could increase precision in oncological diagnosis [...] Read more.
Hyperspectral imaging (HSI) is a non-invasive, contrast-free optical-based tool that has recently been applied in medical and basic research fields. The opportunity to use HSI to identify exogenous tumor markers in a large field of view (LFOV) could increase precision in oncological diagnosis and surgical treatment. In this study, the anti-high mobility group B1 (HMGB1) labeled with Alexa fluorophore (647 nm) was used as the target molecule. This is the proof-of-concept of HSI’s ability to quantify antibodies via an in vitro setting. A first test was performed to understand whether the relative absorbance provided by the HSI camera was dependent on volume at a 1:1 concentration. A serial dilution of 1:1, 10, 100, 1000, and 10,000 with phosphatase-buffered saline (PBS) was then used to test the sensitivity of the camera at the minimum and maximum volumes. For the analysis, images at 640 nm were extracted from the hypercubes according to peak signals matching the specificities of the antibody manufacturer. The results showed a positive correlation between relative absorbance and volume (r = 0.9709, p = 0.0013). The correlation between concentration and relative absorbance at min (1 µL) and max (20 µL) volume showed r = 0.9925, p < 0.0001, and r = 0.9992, p < 0.0001, respectively. These results demonstrate the HSI potential in quantifying HMGB1, hence deserving further studies in ex vivo and in vivo settings. Full article
(This article belongs to the Special Issue Application of Hyperspectral Imaging in Health and Disease)
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23 pages, 5034 KiB  
Article
Towards Real-Time Hyperspectral Multi-Image Super-Resolution Reconstruction Applied to Histological Samples
by Carlos Urbina Ortega, Eduardo Quevedo Gutiérrez, Laura Quintana, Samuel Ortega, Himar Fabelo, Lucana Santos Falcón and Gustavo Marrero Callico
Sensors 2023, 23(4), 1863; https://doi.org/10.3390/s23041863 - 7 Feb 2023
Cited by 5 | Viewed by 2618
Abstract
Hyperspectral Imaging (HSI) is increasingly adopted in medical applications for the usefulness of understanding the spectral signature of specific organic and non-organic elements. The acquisition of such images is a complex task, and the commercial sensors that can measure such images is scarce [...] Read more.
Hyperspectral Imaging (HSI) is increasingly adopted in medical applications for the usefulness of understanding the spectral signature of specific organic and non-organic elements. The acquisition of such images is a complex task, and the commercial sensors that can measure such images is scarce down to the point that some of them have limited spatial resolution in the bands of interest. This work proposes an approach to enhance the spatial resolution of hyperspectral histology samples using super-resolution. As the data volume associated to HSI has always been an inconvenience for the image processing in practical terms, this work proposes a relatively low computationally intensive algorithm. Using multiple images of the same scene taken in a controlled environment (hyperspectral microscopic system) with sub-pixel shifts between them, the proposed algorithm can effectively enhance the spatial resolution of the sensor while maintaining the spectral signature of the pixels, competing in performance with other state-of-the-art super-resolution techniques, and paving the way towards its use in real-time applications. Full article
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21 pages, 3655 KiB  
Article
Human Hepatocellular Carcinoma Classification from H&E Stained Histopathology Images with 3D Convolutional Neural Networks and Focal Loss Function
by Umut Cinar, Rengul Cetin Atalay and Yasemin Yardimci Cetin
J. Imaging 2023, 9(2), 25; https://doi.org/10.3390/jimaging9020025 - 21 Jan 2023
Cited by 11 | Viewed by 3050
Abstract
This paper proposes a new Hepatocellular Carcinoma (HCC) classification method utilizing a hyperspectral imaging system (HSI) integrated with a light microscope. Using our custom imaging system, we have captured 270 bands of hyperspectral images of healthy and cancer tissue samples with HCC diagnosis [...] Read more.
This paper proposes a new Hepatocellular Carcinoma (HCC) classification method utilizing a hyperspectral imaging system (HSI) integrated with a light microscope. Using our custom imaging system, we have captured 270 bands of hyperspectral images of healthy and cancer tissue samples with HCC diagnosis from a liver microarray slide. Convolutional Neural Networks with 3D convolutions (3D-CNN) have been used to build an accurate classification model. With the help of 3D convolutions, spectral and spatial features within the hyperspectral cube are incorporated to train a strong classifier. Unlike 2D convolutions, 3D convolutions take the spectral dimension into account while automatically collecting distinctive features during the CNN training stage. As a result, we have avoided manual feature engineering on hyperspectral data and proposed a compact method for HSI medical applications. Moreover, the focal loss function, utilized as a CNN cost function, enables our model to tackle the class imbalance problem residing in the dataset effectively. The focal loss function emphasizes the hard examples to learn and prevents overfitting due to the lack of inter-class balancing. Our empirical results demonstrate the superiority of hyperspectral data over RGB data for liver cancer tissue classification. We have observed that increased spectral dimension results in higher classification accuracy. Both spectral and spatial features are essential in training an accurate learner for cancer tissue classification. Full article
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