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31 pages, 3702 KB  
Article
Optimized Intrusion Detection in the IoT Through Statistical Selection and Classification with CatBoost and SNN
by Brou Médard Kouassi, Abou Bakary Ballo, Kacoutchy Jean Ayikpa, Diarra Mamadou and Youssouf Diabagate
Technologies 2025, 13(10), 441; https://doi.org/10.3390/technologies13100441 - 30 Sep 2025
Abstract
With the rapid expansion of the Internet of Things (IoT), interconnected systems are becoming increasingly vulnerable to cyberattacks, making intrusion detection essential but difficult. The marked imbalance between regular traffic and attacks, as well as the redundancy of variables from multiple sensors and [...] Read more.
With the rapid expansion of the Internet of Things (IoT), interconnected systems are becoming increasingly vulnerable to cyberattacks, making intrusion detection essential but difficult. The marked imbalance between regular traffic and attacks, as well as the redundancy of variables from multiple sensors and protocols, greatly complicates this task. The study aims to improve the robustness of IoT intrusion detection systems by reducing the risks of overfitting and false negatives through appropriate rebalancing and variable selection strategies. We combine two data rebalancing techniques, Synthetic Minority Over-sampling Technique (SMOTE) and Random Undersampling (RUS), with two feature selection methods, LASSO and Mutual Information, and then evaluate their performance on two classification models: CatBoost and a Simple Neural Network (SNN). The experiments show the superiority of CatBoost, which achieves an accuracy of 82% compared to 80% for SNN, and confirm the effectiveness of SMOTE over RUS, particularly for SNN. The CatBoost + SMOTE + LASSO configuration stands out with a recall of 82.43% and an F1-score of 85.08%, offering the best compromise between detection and reliability. These results demonstrate that combining rebalancing and variable selection techniques significantly enhances the performance and reliability of intrusion detection systems in the IoT, thereby strengthening cybersecurity in connected environments. Full article
(This article belongs to the Special Issue IoT-Enabling Technologies and Applications—2nd Edition)
21 pages, 2336 KB  
Article
Machine and Deep Learning on Radiomic Features from Contrast-Enhanced Mammography and Dynamic Contrast-Enhanced Magnetic Resonance Imaging for Breast Cancer Characterization
by Roberta Fusco, Vincenza Granata, Teresa Petrosino, Paolo Vallone, Maria Assunta Daniela Iasevoli, Mauro Mattace Raso, Sergio Venanzio Setola, Davide Pupo, Gerardo Ferrara, Annarita Fanizzi, Raffaella Massafra, Miria Lafranceschina, Daniele La Forgia, Laura Greco, Francesca Romana Ferranti, Valeria De Soccio, Antonello Vidiri, Francesca Botta, Valeria Dominelli, Enrico Cassano, Charlotte Marguerite Lucille Trombadori, Paolo Belli, Giovanna Trecate, Chiara Tenconi, Maria Carmen De Santis, Luca Boldrini and Antonella Petrilloadd Show full author list remove Hide full author list
Bioengineering 2025, 12(9), 952; https://doi.org/10.3390/bioengineering12090952 - 2 Sep 2025
Viewed by 916
Abstract
Objective: The aim of this study was to evaluate the accuracy of machine and deep learning approaches on radiomics features obtained by Dynamic Contrast Enhanced Magnetic Resonance Imaging (DCE-MRI) and contrast enhanced mammography (CEM) in the characterization of breast cancer and in the [...] Read more.
Objective: The aim of this study was to evaluate the accuracy of machine and deep learning approaches on radiomics features obtained by Dynamic Contrast Enhanced Magnetic Resonance Imaging (DCE-MRI) and contrast enhanced mammography (CEM) in the characterization of breast cancer and in the prediction of the tumor molecular profile. Methods: A total of 153 patients with malignant and benign lesions were analyzed and underwent MRI examinations. Considering the histological findings as the ground truth, three different types of findings were used in the analysis: (1) benign versus malignant lesions; (2) G1 + G2 vs. G3 classification; (3) the presence of human epidermal growth factor receptor 2 (HER2+ vs. HER2−). Radiomic features (n = 851) were extracted from manually segmented regions of interest using the PyRadiomics platform, following IBSI-compliant protocols. Highly correlated features were excluded, and the remaining features were standardized using z-score normalization. A feature selection process based on Elastic Net regularization (α = 0.5) was used to reduce dimensionality. Synthetic balancing of the training data was applied using the ROSE method to address class imbalance. Model performance was evaluated using repeated 10-fold cross-validation and AUC-based metrics. Results: Among the 153 patients enrolled in the studies, 113 were malignant lesions. Among the 113 malignant lesions, 32 had high grading (G3) and 66 had the HER2+ receptor. Radiomic features derived from both CEM and DCE-MRI showed strong discriminative performance for malignancy detection, with several features achieving AUCs above 0.80. Gradient Boosting Machine (GBM) achieved the highest accuracy (0.911) and AUC (0.907) in differentiating benign from malignant lesions. For tumor grading, the neural network model attained the best accuracy (0.848), while LASSO yielded the highest sensitivity (0.667) for detecting high-grade tumors. In predicting HER2+ status, the neural network also performed best (AUC = 0.669), with a sensitivity of 0.842. Conclusions: Radiomics-based machine learning models applied to multiparametric CEM and DCE-MRI images offer promising, non-invasive tools for breast cancer characterization. The models effectively distinguished benign from malignant lesions and showed potential in predicting histological grade and HER2 status. These results demonstrate that radiomic features extracted from CEM and DCE-MRI, when analyzed through machine and deep learning models, can support accurate breast cancer characterization. Such models may assist clinicians in early diagnosis, histological grading, and biomarker assessment, potentially enhancing personalized treatment planning and non-invasive decision-making in routine practice. Full article
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22 pages, 6426 KB  
Article
Predicting Soil Fertility in Semi-Arid Agroecosystems Using Interpretable Machine Learning Models: A Sustainable Approach for Data-Sparse Regions
by Nurullah Acir
Sustainability 2025, 17(16), 7547; https://doi.org/10.3390/su17167547 - 21 Aug 2025
Viewed by 663
Abstract
The accurate assessment of soil fertility is critical for guiding nutrient management and promoting sustainable agriculture in semi-arid agroecosystems. In this study, a machine learning-based Soil Fertility Index (SFI) model was developed using regularized regression techniques to evaluate fertility across a dryland maize-growing [...] Read more.
The accurate assessment of soil fertility is critical for guiding nutrient management and promoting sustainable agriculture in semi-arid agroecosystems. In this study, a machine learning-based Soil Fertility Index (SFI) model was developed using regularized regression techniques to evaluate fertility across a dryland maize-growing region in southeastern Türkiye. A total of 64 composite soil samples were collected from the Batman Plain, characterized by alkaline and salinity-prone conditions. Five soil chemical indicators, electrical conductivity (EC), pH, organic matter (OM), zinc (Zn), and iron (Fe), were selected for SFI estimation using a standardized rating approach. The dataset was randomly split into training (80%) and test (20%) subsets to calibrate and validate the models. Ridge, Lasso, and Elastic Net regression models were employed to predict SFI and assess variable importance. Among these, the Lasso model achieved the highest predictive accuracy on test data (R2 = 0.746, RMSE = 0.060), retaining only EC and Zn as significant predictors. Ridge and Elastic Net captured OM and pH, though their contributions were minimal (|β| < 0.01). Spatial predictions showed moderate alignment with observed SFI values (range: 0.48–0.76), but all models underestimated high-fertility zones (>0.69), likely due to coefficient shrinkage. Despite its simplicity, the Lasso model offered superior interpretability and spatial resolution. The results reveal the potential of interpretable machine learning for supporting sustainable, site-specific fertility assessment and informed nutrient management in data-scarce and environmentally vulnerable regions. Full article
(This article belongs to the Section Soil Conservation and Sustainability)
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32 pages, 4113 KB  
Article
A Novel Deep Learning-Based Soil Moisture Prediction Model Using Adaptive Group Radial Lasso Regularized Basis Function Networks (AGRL-RBFN) Optimized by Hierarchical Correlated Spider Wasp Optimizer (HCSWO) and Incremental Learning (IL)
by Claudia Cherubini and Muthu Bala Anand
Water 2025, 17(16), 2379; https://doi.org/10.3390/w17162379 - 11 Aug 2025
Viewed by 570
Abstract
Soil moisture serves as a critical factor in the hydrological cycle, affecting plant growth, ecosystem health, and groundwater reserves. Current methods for monitoring and predicting it fail to account for the complexities introduced by climatic variations and other influencing factors, such as the [...] Read more.
Soil moisture serves as a critical factor in the hydrological cycle, affecting plant growth, ecosystem health, and groundwater reserves. Current methods for monitoring and predicting it fail to account for the complexities introduced by climatic variations and other influencing factors, such as the effects of atmospheric interference and data gaps, leading to reduced prediction accuracy. To address these challenges, this study introduces a novel soil moisture prediction model based on remote sensing and deep learning, utilizing the Adaptive Group Radial Lasso Regularized Basis Function Networks (AGRL-RBFN) optimized by the Hierarchical Correlated Spider Wasp Optimizer (HCSWO) and incremental learning (IL) techniques. The proposed method for monitoring soil moisture utilizes hyperspectral and soil moisture data from a 2017 campaign in Karlsruhe, encompassing variables such as datetime, soil moisture percentage, soil temperature, and remote sensing spectral bands. The proposed methodology begins with comprehensive preprocessing of historical remote sensing data to fill gaps, reduce noise, and correct atmospheric disturbances. It then employs a unique seasonal mapping and grouping technique, enhanced by the AdaK-MCC method, to analyze the impact of climatic changes on soil moisture patterns. The model’s innovative feature selection approach, using HCSWO, identifies the most significant predictors, ensuring optimal data input for the AGRL-RBFN model. The model achieves an impressive accuracy of 98.09%, a precision of 98.17%, a recall of 97.24%, and an F1-score of 98.95%, outperforming existing methods. Furthermore, it attains a mean absolute error (MAE) of 0.047 in gap filling and a Dunn Index of 4.897 for clustering. Although successful in many aspects, the study did not investigate the relationship between soil moisture levels and specific crops, which presents an opportunity for future research aimed at enhancing smart agricultural practices. Furthermore, the model can be refined by integrating a wider range of datasets and improving its resilience to extreme weather conditions, thereby providing a reliable tool for climate-responsive agricultural management and water conservation strategies. Full article
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19 pages, 3043 KB  
Article
Enhancing Sensitivity of Commercial Gold Nanoparticle-Based Lateral Flow Assays: A Comparative Study of Colorimetric and Photothermal Approaches
by Jully Blackshare, Hansel A. Mina, Amanda J. Deering, Bartek Rajwa, J. Paul Robinson and Euiwon Bae
Sensors 2025, 25(16), 4904; https://doi.org/10.3390/s25164904 - 8 Aug 2025
Viewed by 713
Abstract
Lateral flow assays (LFAs) are extensively utilized in point-of-care diagnostics due to their affordability, simplicity, and rapid time-to-results. However, their low sensitivity remains a significant limitation, particularly for detecting foodborne pathogens at concentrations below regulatory thresholds. This study evaluated two distinct sensing modalities—photothermal [...] Read more.
Lateral flow assays (LFAs) are extensively utilized in point-of-care diagnostics due to their affordability, simplicity, and rapid time-to-results. However, their low sensitivity remains a significant limitation, particularly for detecting foodborne pathogens at concentrations below regulatory thresholds. This study evaluated two distinct sensing modalities—photothermal speckle imaging and colorimetric line intensity analysis—for their potential to enhance the sensitivity of commercially available LFAs. Photothermal imaging quantified refractive index shifts induced by plasmonic heating of gold nanoparticles, while colorimetric analysis used smartphone-acquired images processed with machine learning. The photothermal method achieved a limit of detection (LOD) of 2.13 × 105 CFU/mL, while the colorimetric approach, using a logistic regression model with LASSO regularization, achieved an LOD of 105 CFU/mL. While both approaches demonstrated detection thresholds comparable to traditional visual interpretation, the colorimetric method provided an added advantage by enabling quantitative prediction of bacterial concentration through regression modeling. With further optimization of each sensing method, these findings demonstrate the feasibility of improving unmodified commercial LFAs through optical and computational enhancements, offering a promising pathway toward the development of portable biosensing systems for real-time food safety monitoring. Full article
(This article belongs to the Special Issue Feature Papers in Optical Sensors 2025)
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26 pages, 514 KB  
Article
Improving Voice Spoofing Detection Through Extensive Analysis of Multicepstral Feature Reduction
by Leonardo Mendes de Souza, Rodrigo Capobianco Guido, Rodrigo Colnago Contreras, Monique Simplicio Viana and Marcelo Adriano dos Santos Bongarti
Sensors 2025, 25(15), 4821; https://doi.org/10.3390/s25154821 - 5 Aug 2025
Viewed by 975
Abstract
Voice biometric systems play a critical role in numerous security applications, including electronic device authentication, banking transaction verification, and confidential communications. Despite their widespread utility, these systems are increasingly targeted by sophisticated spoofing attacks that leverage advanced artificial intelligence techniques to generate realistic [...] Read more.
Voice biometric systems play a critical role in numerous security applications, including electronic device authentication, banking transaction verification, and confidential communications. Despite their widespread utility, these systems are increasingly targeted by sophisticated spoofing attacks that leverage advanced artificial intelligence techniques to generate realistic synthetic speech. Addressing the vulnerabilities inherent to voice-based authentication systems has thus become both urgent and essential. This study proposes a novel experimental analysis that extensively explores various dimensionality reduction strategies in conjunction with supervised machine learning models to effectively identify spoofed voice signals. Our framework involves extracting multicepstral features followed by the application of diverse dimensionality reduction methods, such as Principal Component Analysis (PCA), Truncated Singular Value Decomposition (SVD), statistical feature selection (ANOVA F-value, Mutual Information), Recursive Feature Elimination (RFE), regularization-based LASSO selection, Random Forest feature importance, and Permutation Importance techniques. Empirical evaluation using the ASVSpoof 2017 v2.0 dataset measures the classification performance with the Equal Error Rate (EER) metric, achieving values of approximately 10%. Our comparative analysis demonstrates significant performance gains when dimensionality reduction methods are applied, underscoring their value in enhancing the security and effectiveness of voice biometric verification systems against emerging spoofing threats. Full article
(This article belongs to the Special Issue Sensors and Machine-Learning Based Signal Processing)
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14 pages, 403 KB  
Article
An Inexact Nonsmooth Quadratic Regularization Algorithm
by Anliang Wang, Xiangmei Wang and Chunfang Liao
Axioms 2025, 14(8), 604; https://doi.org/10.3390/axioms14080604 - 4 Aug 2025
Viewed by 402
Abstract
The quadratic regularization technique is widely used in the literature for constructing efficient algorithms, particularly for solving nonsmooth optimization problems. We propose an inexact nonsmooth quadratic regularization algorithm for solving large-scale optimization, which involves a large-scale smooth separable item and a nonsmooth one. [...] Read more.
The quadratic regularization technique is widely used in the literature for constructing efficient algorithms, particularly for solving nonsmooth optimization problems. We propose an inexact nonsmooth quadratic regularization algorithm for solving large-scale optimization, which involves a large-scale smooth separable item and a nonsmooth one. The main difference between our algorithm and the (exact) quadratic regularization algorithm is that it employs inexact gradients instead of the full gradients of the smooth item. Also, a slightly different update rule for the regularization parameters is adopted for easier implementation. Under certain assumptions, it is proved that the algorithm achieves a first-order approximate critical point of the problem, and the iteration complexity of the algorithm is O(ε2). In the end, we apply the algorithm to solve LASSO problems. The numerical results show that the inexact algorithm is more efficient than the corresponding exact one in large-scale cases. Full article
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25 pages, 668 KB  
Article
Bridging the Energy Divide: An Analysis of the Socioeconomic and Technical Factors Influencing Electricity Theft in Kinshasa, DR Congo
by Patrick Kankonde and Pitshou Bokoro
Energies 2025, 18(13), 3566; https://doi.org/10.3390/en18133566 - 7 Jul 2025
Cited by 1 | Viewed by 593
Abstract
Electricity theft remains a persistent challenge, particularly in developing economies where infrastructure limitations and socioeconomic disparities contribute to illegal connections. This study analyzes the determinants influencing electricity theft in Kinshasa, the Democratic Republic of Congo, using a logistic regression model applied to 385 [...] Read more.
Electricity theft remains a persistent challenge, particularly in developing economies where infrastructure limitations and socioeconomic disparities contribute to illegal connections. This study analyzes the determinants influencing electricity theft in Kinshasa, the Democratic Republic of Congo, using a logistic regression model applied to 385 observations, which includes random bootstrapping sampling for enhanced stability and power analysis validation to confirm the adequacy of the sample size. The model achieved an AUC of 0.86, demonstrating strong discriminatory power, while the Hosmer–Lemeshow test (p = 0.471) confirmed its robust fit. Our findings indicate that electricity supply quality, financial stress, tampering awareness, and billing transparency are key predictors of theft likelihood. Households experiencing unreliable service and economic hardship showed higher theft probability, while those receiving regular invoices and alternative legal energy solutions exhibited lower risk. Lasso regression was implemented to refine predictor selection, ensuring model efficiency. Based on these insights, a multifaceted policy approach—including grid modernization, prepaid billing systems, awareness campaigns, and regulatory enforcement—is recommended to mitigate electricity theft and promote sustainable energy access in urban environments. Full article
(This article belongs to the Section F4: Critical Energy Infrastructure)
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22 pages, 2366 KB  
Article
Using Machine Learning and Analytical Modeling to Predict Poly-Crystalline PV Performance in Jordan
by Sinan S. Faouri, Salah Abdallah and Dana Helmi Salameh
Energies 2025, 18(13), 3458; https://doi.org/10.3390/en18133458 - 1 Jul 2025
Viewed by 383
Abstract
This study investigates the performance prediction of poly-crystalline photovoltaic (PV) systems in Jordan using experimental data, analytical models, and machine learning approaches. Two 5 kWp grid-connected PV systems at Applied Science Private University in Amman were analyzed: one south-oriented and another east–west (EW)-oriented. [...] Read more.
This study investigates the performance prediction of poly-crystalline photovoltaic (PV) systems in Jordan using experimental data, analytical models, and machine learning approaches. Two 5 kWp grid-connected PV systems at Applied Science Private University in Amman were analyzed: one south-oriented and another east–west (EW)-oriented. Both systems are fixed at an 11° tilt angle. Linear regression, Least Absolute Shrinkage and Selection Operator (LASSO), ElasticNet, and artificial neural networks (ANNs) were employed for performance prediction. Among these, linear regression outperformed the others due to its accuracy, interpretability, and computational efficiency, making it an effective baseline model. LASSO and ElasticNet were also explored for their regularization benefits in managing feature relevance and correlation. ANNs were utilized to capture complex nonlinear relationships, but their performance was limited, likely because of the small sample size and lack of temporal dynamics. Regularization and architecture choices are discussed in this paper. For the EW system, linear regression predicted an annual yield of 1510.45 kWh/kWp with a 2.1% error, compared to 1433.9 kWh/kWp analytically (3.12% error). The south-oriented system achieved 1658.15 kWh/kWp with a 1.5% error, outperforming its analytical estimate of 1772.9 kWh/kWp (7.89% error). Productivity gains for the south-facing system reached 23.64% (analytical), 10.43% (experimental), and 9.77% (predicted). These findings support the technical and economic assessment of poly-crystalline PV deployment in Jordan and regions with similar climatic conditions. Full article
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10 pages, 531 KB  
Article
Histological Grade, Tumor Breadth, and Hypertension Predict Early Recurrence in Pediatric Sarcoma: A LASSO-Regularized Micro-Cohort Study
by Alexander Fiedler, Mehran Dadras, Marius Drysch, Sonja Verena Schmidt, Flemming Puscz, Felix Reinkemeier, Marcus Lehnhardt and Christoph Wallner
Children 2025, 12(6), 806; https://doi.org/10.3390/children12060806 - 19 Jun 2025
Viewed by 442
Abstract
Background/Objectives: Pediatric sarcomas are a biologically diverse group of mesenchymal tumors associated with morbidity due to recurrence, despite aggressive multimodal treatment. Reliable predictors of early recurrence remain limited. This exploratory study aimed to identify clinical features associated with first tumor recurrence using [...] Read more.
Background/Objectives: Pediatric sarcomas are a biologically diverse group of mesenchymal tumors associated with morbidity due to recurrence, despite aggressive multimodal treatment. Reliable predictors of early recurrence remain limited. This exploratory study aimed to identify clinical features associated with first tumor recurrence using a machine learning approach tailored to low-event settings. Methods: We conducted a retrospective, single-center cohort study of 23 pediatric patients with histologically confirmed sarcoma. Forty-six baseline variables were extracted per patient, including clinical, histological, and comorbidity data. Tumor recurrence was the primary binary endpoint. A LASSO-regularized logistic regression model was developed using leave-one-out cross-validation (LOOCV) to identify the most informative predictors. Dimensionality reduction (PCA) and SHAP-value analyses were used to visualize patient clustering and interpret variable contributions. Results: The model identified a four-variable risk signature comprising histological grade, primary tumor width, arterial hypertension, and extremity localization. Each additional tumor grade or centimeter of width approximately doubled the odds of recurrence (OR 2.18 and 2.04, respectively). Hypertension and limb location were associated with a 1.7 and 1.9 odds ratio of recurrence, respectively. The model achieved a balanced accuracy of 0.61 ± 0.08 and AUROC of 0.47 ± 0.12, reflecting limited discriminative power. PCA mapping revealed distinct outlier patterns correlating with high-risk profiles. Conclusions: Even in a small cohort, classical prognostic markers, such as tumor grade and size, retained predictive relevance, while hypertension emerged as a novel, potentially modifiable cofactor or indicator for recurrence. Although model performance was modest, the findings are hypothesis-generating and warrant validation in larger prospective datasets. Full article
(This article belongs to the Section Pediatric Hematology & Oncology)
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19 pages, 750 KB  
Article
Evaluating Estimator Performance Under Multicollinearity: A Trade-Off Between MSE and Accuracy in Logistic, Lasso, Elastic Net, and Ridge Regression with Varying Penalty Parameters
by H. M. Nayem, Sinha Aziz and B. M. Golam Kibria
Stats 2025, 8(2), 45; https://doi.org/10.3390/stats8020045 - 31 May 2025
Viewed by 1020
Abstract
Multicollinearity in logistic regression models can result in inflated variances and yield unreliable estimates of parameters. Ridge regression, a regularized estimation technique, is frequently employed to address this issue. This study conducts a comparative evaluation of the performance of 23 established ridge regression [...] Read more.
Multicollinearity in logistic regression models can result in inflated variances and yield unreliable estimates of parameters. Ridge regression, a regularized estimation technique, is frequently employed to address this issue. This study conducts a comparative evaluation of the performance of 23 established ridge regression estimators alongside Logistic Regression, Elastic-Net, Lasso, and Generalized Ridge Regression (GRR), considering various levels of multicollinearity within the context of logistic regression settings. Simulated datasets with high correlations (0.80, 0.90, 0.95, and 0.99) and real-world data (municipal and cancer remission) were analyzed. Both results show that ridge estimators, such as kAL1, kAL2, kKL1, and kKL2, exhibit strong performance in terms of Mean Squared Error (MSE) and accuracy, particularly in smaller samples, while GRR demonstrates superior performance in large samples. Real-world data further confirm that GRR achieves the lowest MSE in highly collinear municipal data, while ridge estimators and GRR help prevent overfitting in small-sample cancer remission data. The results underscore the efficacy of ridge estimators and GRR in handling multicollinearity, offering reliable alternatives to traditional regression techniques, especially for datasets with high correlations and varying sample sizes. Full article
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33 pages, 17535 KB  
Article
MultiScaleFusion-Net and ResRNN-Net: Proposed Deep Learning Architectures for Accurate and Interpretable Pregnancy Risk Prediction
by Amna Asad, Madiha Sarwar, Muhammad Aslam, Edore Akpokodje and Syeda Fizzah Jilani
Appl. Sci. 2025, 15(11), 6152; https://doi.org/10.3390/app15116152 - 30 May 2025
Viewed by 957
Abstract
Women exhibit marked physiological transformations in pregnancy, mandating regular and holistic assessment. Maternal and fetal vitality is governed by a spectrum of clinical, demographic, and lifestyle factors throughout this critical period. The existing maternal health monitoring techniques lack precision in assessing pregnancy-related risks, [...] Read more.
Women exhibit marked physiological transformations in pregnancy, mandating regular and holistic assessment. Maternal and fetal vitality is governed by a spectrum of clinical, demographic, and lifestyle factors throughout this critical period. The existing maternal health monitoring techniques lack precision in assessing pregnancy-related risks, often leading to late interventions and adverse outcomes. Accurate and timely risk prediction is crucial to avoid miscarriages. This research proposes a deep learning framework for personalized pregnancy risk prediction using the NFHS-5 dataset, and class imbalance is addressed through a hybrid NearMiss-SMOTE approach. Fifty-one primary features are selected via the LASSO to refine the dataset and enhance model interpretability and efficiency. The framework integrates a multimodal model (NFHS-5, fetal plane images, and EHG time series) along with two core architectures. ResRNN-Net further combines Bi-LSTM, CNNs, and attention mechanisms to capture sequential dependencies. MultiScaleFusion-Net leverages GRU and multiscale convolutions for effective feature extraction. Additionally, TabNet and MLP models are explored to compare interpretability and computational efficiency. SHAP and Grad-CAM are used to ensure transparency and explainability, offering both feature importance and visual explanations of predictions. The proposed models are trained using 5-fold stratified cross-validation and evaluated with metrics including accuracy, precision, recall, F1-score, and ROC–AUC. The results demonstrate that MultiScaleFusion-Net balances accuracy and computational efficiency, making it suitable for real-time clinical deployment, while ResRNN-Net achieves higher precision at a slight computational cost. Performance comparisons with baseline machine learning models confirm the superiority of deep learning approaches, achieving over 80% accuracy in pregnancy complication prediction. Full article
(This article belongs to the Special Issue Application of Artificial Intelligence in Biomedical Informatics)
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26 pages, 13887 KB  
Article
Multi-Omics Identification of Fos as a Central Regulator in Skeletal Muscle Adaptation to Long-Term Aerobic Exercise
by Chaoyang Li, Xinyuan Zhu and Yi Yan
Biology 2025, 14(6), 596; https://doi.org/10.3390/biology14060596 - 24 May 2025
Viewed by 1008
Abstract
Skeletal muscle health and function are closely linked to long-term aerobic exercise, particularly in enhancing muscle metabolism and regulating gene expression. Regular endurance training can significantly ameliorate metabolic dysfunction and prevent chronic diseases. However, the precise molecular mechanisms underlying skeletal muscle adaptations to [...] Read more.
Skeletal muscle health and function are closely linked to long-term aerobic exercise, particularly in enhancing muscle metabolism and regulating gene expression. Regular endurance training can significantly ameliorate metabolic dysfunction and prevent chronic diseases. However, the precise molecular mechanisms underlying skeletal muscle adaptations to long-term aerobic exercise require further clarification. To address this, we integrated transcriptomic and single-cell omics datasets from multiple long-term aerobic exercise models retrieved from the GEO database. After merging and batch correction, differential expression analysis identified 204 DEGs, including 110 upregulated and 94 downregulated genes. Key feature genes were screened using Lasso regression, SVM-RFE, and Random Forest machine learning algorithms, validated by RT-qPCR, and refined through PPI network analysis. Among them, Fos and Tnfrsf12a were significantly downregulated following long-term aerobic exercise. Notably, Fos exhibited a more pronounced decrease than Tnfrsf12a, and was strongly associated with inflammation and muscle regeneration. PPI network analysis indicated that Fos interacted with genes such as Casp3, Egr1, Aft3, Hspa5, Src, and Igf2. GO, KEGG, and GSEA enrichment analyses revealed that Fos is involved in skeletal muscle differentiation, tissue remodeling, and the NF-κB inflammatory pathway. ssGSEA analysis further showed that samples with low Fos expression had significantly elevated Th1/Th2 and Treg cell infiltration. Single-cell analysis confirmed preferential Fos expression in muscle fiber/adipocyte progenitors, satellite cells, and tenocytes, all critical for myogenesis. In summary, our findings suggest that long-term aerobic exercise downregulates Fos, potentially alleviating inflammation and enhancing satellite cell-mediated muscle regeneration. Fos may serve as a central regulator of skeletal muscle remodeling during long-term aerobic exercise. Full article
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13 pages, 264 KB  
Article
Parameter Estimation of Geographically and Temporally Weighted Elastic Net Ordinal Logistic Regression
by Margaretha Ohyver, Purhadi and Achmad Choiruddin
Mathematics 2025, 13(8), 1345; https://doi.org/10.3390/math13081345 - 19 Apr 2025
Viewed by 690
Abstract
Geographically and Temporally Weighted Elastic Net Ordinal Logistic Regression is a parsimonious ordinal logistic regression with consideration of the existence of spatial and temporal effects. This model has been developed with the following three considerations: the spatial effect, the temporal effect, and predictor [...] Read more.
Geographically and Temporally Weighted Elastic Net Ordinal Logistic Regression is a parsimonious ordinal logistic regression with consideration of the existence of spatial and temporal effects. This model has been developed with the following three considerations: the spatial effect, the temporal effect, and predictor selection. The last point prompted the use of Elastic Net regularization in choosing predictors while handling multicollinearity, which often arises when there are many predictors involved. The Elastic Net penalty combines ridge and LASSO penalties, leading to the determination of the appropriate λEN and αEN. Therefore, the objective of this study is to determine the parameter estimator using Maximum Likelihood Estimation. The estimation process comprises defining the likelihood function, determining the natural logarithm of the likelihood function, and maximizing the function using Berndt–Hall–Hall–Hausman. These steps continue until the estimator converges on the values that maximize the likelihood function. This study contributes by developing an estimation framework that integrates spatial and temporal effects with Elastic Net regularization, allowing for improved model interpretation and stability. The findings provide an advanced methodological approach for ordinal logistic regression models that incorporate spatial and temporal dependencies. This framework is particularly useful for applications in fields such as economic forecasting, epidemiology, and environmental studies, where ordinal responses exhibit spatial and temporal patterns. Full article
(This article belongs to the Special Issue Spatial Statistics Methods and Modeling)
12 pages, 1964 KB  
Article
Radiomic Features of Mesorectal Fat as Indicators of Response in Rectal Cancer Patients Undergoing Neoadjuvant Therapy
by Francesca Treballi, Ginevra Danti, Sofia Boccioli, Sebastiano Paolucci, Simone Busoni, Linda Calistri and Vittorio Miele
Tomography 2025, 11(4), 44; https://doi.org/10.3390/tomography11040044 - 7 Apr 2025
Cited by 1 | Viewed by 981
Abstract
Background: Rectal cancer represents a major cause of mortality in the United States. Management strategies are highly individualized, depending on patient-specific factors and tumor characteristics. The therapeutic landscape is rapidly evolving, with notable advancements in response rates to both radiotherapy and chemotherapy. For [...] Read more.
Background: Rectal cancer represents a major cause of mortality in the United States. Management strategies are highly individualized, depending on patient-specific factors and tumor characteristics. The therapeutic landscape is rapidly evolving, with notable advancements in response rates to both radiotherapy and chemotherapy. For locally advanced rectal cancer (LARC, defined as up to T3–4 N+), the standard of care involves total mesorectal excision (TME) following neoadjuvant chemoradiotherapy (nCRT). Magnetic resonance imaging (MRI) has emerged as the gold standard for local tumor staging and is increasingly pivotal in post-treatment restaging. Aim: In our study, we proposed an MRI-based radiomic model to identify characteristic features of peritumoral mesorectal fat in two patient groups: good responders and poor responders to neoadjuvant therapy. The aim was to assess the potential presence of predictive factors for favorable or unfavorable responses to neoadjuvant chemoradiotherapy, thereby optimizing treatment management and improving personalized clinical decision-making. Methods: We conducted a retrospective analysis of adult patients with LARC who underwent pre- and post-nCRT MRI scans. Patients were classified as good responders (Group 0) or poor responders (Group 1) based on MRI findings, including tumor volume reduction, signal intensity changes on T2-weighted and diffusion-weighted imaging (DWI), and alterations in the circumferential resection margin (CRM) and extramural vascular invasion (EMVI) status. Classification criteria were based on the established literature to ensure consistency. Key clinical and imaging parameters, such as age, TNM stage, CRM involvement, and EMVI presence, were recorded. A radiomic model was developed using the LASSO algorithm for feature selection and regularization from 107 extracted radiomic features. Results: We included 44 patients (26 males and 18 females) who, following nCRT, were categorized into Group 0 (28 patients) and Group 1 (16 patients). The pre-treatment MRI analysis identified significant features (out of 107) for each sequence based on the Mann–Whitney test and t-test. The LASSO algorithm selected three features (shape_Sphericity, shape_Maximum2DDiameterSlice, and glcm_Imc2) for the construction of the radiomic logistic regression model, and ROC curves were subsequently generated for each model (AUC: 0.76). Conclusions: We developed an MRI-based radiomic model capable of differentiating and predicting between two groups of rectal cancer patients: responders and non-responders to neoadjuvant chemoradiotherapy (nCRT). This model has the potential to identify, at an early stage, lesions with a high likelihood of requiring surgery and those that could potentially be managed with medical treatment alone. Full article
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