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  • Article
  • Open Access
10 Citations
7,243 Views
16 Pages

Supplementing Glycerol to Inoculum Induces Changes in pH, SCFA Profiles, and Microbiota Composition in In-Vitro Batch Fermentation

  • Qingtao Gao,
  • Kai Li,
  • Ruqing Zhong,
  • Cheng Long and ,
  • Lei Liu,
  • Liang Chen and
  • Hongfu Zhang
  • + 2 authors+ 0 author

Glycerol was generally added to the inoculum as a cryoprotectant. However, it was also a suitable substrate for microbial fermentation, which may produce more SCFAs, thereby decreased pH of the fermentation broth. This study investigated the effect o...

(This article belongs to the Special Issue Microbial Metabolism in Fermentation Process)
  • Article
  • Open Access
1 Citations
1,071 Views
29 Pages

In Vitro Investigation of Equine Gut Microbiota Alterations During Hypoglycin A Exposure

  • Anne-Christine François,
  • Bernard Taminiau,
  • Benoît Renaud,
  • Irma Elizabeth Gonza-Quito and ,
  • Claire Massey,
  • Carolyn Hyde,
  • Richard J. Piercy,
  • Caroline Douny,
  • Marie-Louise Scippo and
  • Dominique-Marie Votion
  • + 8 authors+ 3 authors

19 November 2025

Hypoglycin A is a plant-derived protoxin that causes atypical myopathy in equids. In atypical myopathy-affected horses, metabolomic and microbiome studies have reported alterations in metabolic markers and faecal microbiota composition, pointing to a...

(This article belongs to the Section Equids)
  • Systematic Review
  • Open Access
1 Citations
1,307 Views
25 Pages

Recent Developments and Applicability of In Vitro Gut Microbiota Models in Biomedical Research and Digestive Diseases—A Systematic Review

  • Ioana-Miruna Balmus,
  • Gabriel Dascalescu,
  • Viorica Rarinca,
  • Alin Ciobica and ,
  • Elena Toader,
  • Georgiana-Emmanuela Gilca-Blanariu,
  • Simona Stefania Juncu,
  • Carol Stanciu and
  • Anca Trifan
  • + 4 authors+ 0 author

16 March 2026

Background and Objectives: Current research approaches focusing on the human gut microbiota require complex in vitro systems that could provide sufficient viability and similarity with the conditions provided by the human intestine. As critical physi...

(This article belongs to the Section Gastroenterology & Hepatology)
  • Article
  • Open Access
10 Citations
4,029 Views
13 Pages

Exploiting Compositionally Similar Grape Marc Samples to Achieve Gradients of Condensed Tannin and Fatty Acids for Modulating In Vitro Methanogenesis

  • Josh L. Hixson,
  • Zoey Durmic,
  • Joy Vadhanabhuti,
  • Philip E. Vercoe and ,
  • Paul A. Smith and
  • Eric N. Wilkes
  • + 1 author+ 0 author

Ruminants produce large amounts of the greenhouse gas, methane, which can be reduced by supplementing feed with products that contain anti-methanogenic compounds, such as the solid winemaking by-product, grape marc. The aim of this study was to explo...

(This article belongs to the Special Issue Special Issue Dedicated to Late Professor Takuo Okuda, “Tannins and Related Polyphenols Revisited: Chemistry, Biochemistry and Biological Activities”)
  • Article
  • Open Access
14 Citations
7,161 Views
24 Pages

In Vitro Fermentation of Pleurotus eryngii Mushrooms by Human Fecal Microbiota: Metataxonomic Analysis and Metabolomic Profiling of Fermentation Products

  • Paris Christodoulou,
  • Marigoula Vlassopoulou,
  • Maria Zervou,
  • Evangelos Xanthakos and ,
  • Panagiotis Moulos,
  • Georgios Koutrotsios,
  • Georgios I. Zervakis,
  • Evangelia N. Kerezoudi,
  • Evdokia K. Mitsou and
  • Panagiotis Georgiadis
  • + 8 authors+ 3 authors

16 January 2023

Edible mushrooms contain biologically active compounds with antioxidant, antimicrobial, immunomodulatory and anticancer properties. The link between their anticancer and immunomodulatory properties with their possible prebiotic activity on gut micro-...

(This article belongs to the Special Issue New Perspectives on Fungal Molecular Biology Research)
  • Article
  • Open Access
122 Citations
18,862 Views
23 Pages

Effects of Commercial Apple Varieties on Human Gut Microbiota Composition and Metabolic Output Using an In Vitro Colonic Model

  • Athanasios Koutsos,
  • Maria Lima,
  • Lorenza Conterno,
  • Mattia Gasperotti and ,
  • Martina Bianchi,
  • Francesca Fava,
  • Urska Vrhovsek,
  • Julie A. Lovegrove and
  • Kieran M. Tuohy
  • + 4 authors+ 0 author

24 May 2017

Apples are a rich source of polyphenols and fiber. A major proportion of apple polyphenols escape absorption in the small intestine and together with non-digestible polysaccharides reach the colon, where they can serve as substrates for bacterial fer...

(This article belongs to the Special Issue Dietary Fibers and Human Health)
  • Article
  • Open Access
8 Citations
2,547 Views
23 Pages

Novel Acylated Naringin Enhances Propionate Release and Stimulates the Growth of Flavanone-Metabolizing Bacteria in an In Vitro Batch Fermentation Model

  • Blanca Elizabeth Ruiz-Álvarez,
  • José Daniel Padilla-de la Rosa,
  • Marisela González Avila,
  • Georgina Sandoval and
  • Yves Desjardins

17 June 2025

The increasing prevalence of non-communicable diseases (NCDs) is strongly associated with gut microbiota (GM) imbalances and reduced short-chain fatty acid (SCFA) production, primarily driven by poor diet and microbial dysbiosis. Since SCFAs are cruc...

(This article belongs to the Special Issue Postbiotics—Bioactive Microbial Compounds as Health-Promoting Agents)
  • Article
  • Open Access
7 Citations
3,902 Views
13 Pages

Dose–Response Effects of Bamboo Leaves on Rumen Methane Production, Fermentation Characteristics, and Microbial Abundance In Vitro

  • Seong Uk Jo,
  • Shin Ja Lee,
  • Hyun Sang Kim,
  • Jun Sik Eom and ,
  • Youyoung Choi,
  • Yookyung Lee and
  • Sung Sill Lee
  • + 2 authors+ 0 author

29 August 2022

Ruminants produce large amounts of methane as part of their normal digestive processes. Recently, feed additives were shown to inhibit the microorganisms that produce methane in the rumen, consequently reducing methane emissions. The objective of thi...

(This article belongs to the Section Animal Nutrition)
  • Article
  • Open Access
26 Citations
12,775 Views
10 Pages

21 August 2015

Scientific research demonstrates that two indigenous gut bacteria, Lactobacillus and Bifidobacterium can contribute to human health. Although these bacteria can be consumed as probiotics, they can also be produced in the gut by bacteria, and are then...

(This article belongs to the Special Issue Fermented Foods and Probiotics)
  • Article
  • Open Access
54 Citations
18,561 Views
11 Pages

3 May 2013

This study investigated the fermentation and microbiota profiles of three fibers, wheat dextrin (WD), partially hydrolyzed guar gum (PHGG), and inulin, since little is known about the effects of WD and PHGG on gut microbiota. A treatment of salivary...

  • Article
  • Open Access
6 Citations
1,852 Views
13 Pages

Synergistic Effects of Mannan Oligosaccharides and Onion Peels on In Vitro Batch Culture Fermentation of High Concentrate and Forage Diets

  • Lydia K. Olagunju,
  • Oludotun O. Adelusi,
  • Peter A. Dele,
  • Yasmine Shaw and ,
  • Rosetta M. Brice,
  • Oluteru E. Orimaye,
  • Jorge A. Villarreal-González,
  • Hye Won Kang,
  • Ahmed E. Kholif and
  • Uchenna Y. Anele
  • + 5 authors+ 0 author

6 November 2024

The current study evaluated the effect of combining mannan oligosaccharide (MOS) and onion peel (OP) on ruminal in vitro total gas (GP), greenhouse gas emissions, dry matter and fiber fraction digestibility, partitioning factor (PF24; mg degradable D...

(This article belongs to the Special Issue Nutrients and Feed Additives in Ruminants)
  • Article
  • Open Access
67 Citations
6,863 Views
31 Pages

Procyanidin—Cell Wall Interactions within Apple Matrices Decrease the Metabolization of Procyanidins by the Human Gut Microbiota and the Anti-Inflammatory Effect of the Resulting Microbial Metabolome In Vitro

  • Carine Le Bourvellec,
  • Priscilla Bagano Vilas Boas,
  • Pascale Lepercq,
  • Sophie Comtet-Marre and ,
  • Pauline Auffret,
  • Philippe Ruiz,
  • Romain Bott,
  • Catherine M. G. C. Renard,
  • Claire Dufour and
  • Pascale Mosoni
  • + 6 authors+ 1 author

19 March 2019

B-type oligomeric procyanidins in apples constitute an important source of polyphenols in the human diet. Their role in health is not known, although it is suggested that they generate beneficial bioactive compounds upon metabolization by the gut mic...

(This article belongs to the Special Issue Dietary Bioactives and Human Health)
  • Article
  • Open Access
13 Citations
6,417 Views
16 Pages

Effect of Freezing on Gut Microbiota Composition and Functionality for In Vitro Fermentation Experiments

  • Sergio Pérez-Burillo,
  • Daniel Hinojosa-Nogueira,
  • Beatriz Navajas-Porras,
  • Telmo Blasco and ,
  • Francesco Balzerani,
  • Alberto Lerma-Aguilera,
  • Daniel León,
  • Silvia Pastoriza,
  • Iñigo Apaolaza and
  • José Ángel Rufián-Henares
  • + 7 authors+ 2 authors

27 June 2021

The gut microbiota has a profound effect on human health and is modulated by food and bioactive compounds. To study such interaction, in vitro batch fermentations are performed with fecal material, and some experimental designs may require that such...

(This article belongs to the Special Issue Dietary Bioactives, Gut Microbiota, and Human Health)
  • Article
  • Open Access
27 Citations
4,604 Views
15 Pages

There is an interest in controlling rumen methanogenesis as an opportunity to both decrease the emissions of greenhouse gases and improve the energy efficiency of rumen fermentation. However, the effects of inhibiting rumen methanogenesis on fermenta...

(This article belongs to the Section Systems Microbiology)
  • Article
  • Open Access
343 Views
21 Pages

Metabolic Profile and Dynamic Characteristics of Ziziphi Spinosae Semen Flavonoids During Biotransformation and Their Effect on Human Gut Microbiota In Vitro

  • Ruiqi Yang,
  • Haolin Zhang,
  • Yadan Mo,
  • Conghui Wang and ,
  • Jinchun Wu,
  • Lijun Guo,
  • Xiangping Pei,
  • Yan Yan and
  • Chenhui Du
  • + 4 authors+ 0 author

30 August 2026

The Ziziphi spinosae semen flavonoids (ZSSF) possess significant nutritional value and exhibit a wide range of health benefits, exerting positive effects on diseases related to the central nervous system. Given the excellent bioactivity and limited a...

(This article belongs to the Section Nutraceuticals, Functional Foods, and Novel Foods)
  • Article
  • Open Access
20 Citations
8,543 Views
16 Pages

Investigating Yeast–Lactobacilli Interactions through Co-Culture Growth and Metabolite Analysis

  • Stefano Nenciarini,
  • Ana Reis-Costa,
  • Marco Pallecchi,
  • Sonia Renzi and ,
  • Aldo D’Alessandro,
  • Agnese Gori,
  • Benedetta Cerasuolo,
  • Niccolò Meriggi,
  • Gian Luca Bartolucci and
  • Duccio Cavalieri
  • + 5 authors+ 0 author

The various forms of interactions that microorganisms engage in within fermented foods result in distinct metabolic product patterns. Fermentation products often feature both yeasts and bacteria, each possessing characteristics that can enhance the o...

(This article belongs to the Special Issue Perspectives on Microbial Ecology of Fermented Foods)
  • Article
  • Open Access
6 Citations
2,631 Views
13 Pages

Effects of Active Dry Yeast Supplementation in In Vitro and In Vivo Nutrient Digestibility, Rumen Fermentation, and Bacterial Community

  • Haitao Liu,
  • Fei Li,
  • Zhiyuan Ma,
  • Miaomiao Ma and ,
  • Emilio Ungerfeld,
  • Zhian Zhang,
  • Xiuxiu Weng,
  • Baocang Liu,
  • Xiaoyu Deng and
  • Liqing Guo
  • + 5 authors+ 0 author

9 October 2024

This study assessed the impact of active dry yeast (ADY) on nutrient digestibility and rumen fermentation, using both in vitro and in vivo experiments with lambs. In vitro, ADYs were incubated with rumen fluid and a substrate mixture to assess gas pr...

(This article belongs to the Special Issue Advances in Nutritional Manipulation of Rumen Fermentation)
  • Article
  • Open Access
9 Citations
2,446 Views
12 Pages

Growth Performance and Ruminal Fermentation in Lambs with Endoparasites and In Vitro Effect of Medicinal Plants

  • Klára Mikulová,
  • Daniel Petrič,
  • Michaela Komáromyová,
  • Dominika Batťányi and ,
  • Martyna Kozłowska,
  • Adam Cieslak,
  • Sylwester Ślusarczyk,
  • Marián Várady and
  • Zora Váradyová
  • + 4 authors+ 0 author

18 September 2023

We investigated growth performance and ruminal fermentation associated with gastrointestinal nematode (GIN) Haemonchus contortus in lambs and in vitro ruminal fermentation of mallow, chamomile, fumitory, wormwood (Herbmix), and chicory using inoculum...

(This article belongs to the Section Farm Animal Production)
  • Article
  • Open Access
10 Citations
6,070 Views
23 Pages

Novel Fermented Ice Cream Formulations with Improved Antiradical and Anti-Inflammatory Features

  • Andrea Polo,
  • Ali Zein Alabiden Tlais,
  • Pasquale Filannino,
  • Alessio Da Ros and ,
  • Kashika Arora,
  • Vincenzo Cantatore,
  • Olimpia Vincentini,
  • Anja Nicolodi,
  • Renzo Nicolodi and
  • Raffaella Di Cagno
  • + 6 authors+ 1 author

Autochthonous strains belonging to Lacticaseibacillus paracasei and Lacticaseibacillus casei were screened based on pro-technological (kinetics of growth and acidification, exopolysaccharides biosynthesis), functional (cell viability during processin...

(This article belongs to the Special Issue The Antioxidant Potential of Fermented Foods: Challenges and Future Trends)
  • Article
  • Open Access
18 Citations
6,527 Views
16 Pages

In Vitro Fermentability of Soybean Oligosaccharides from Wastewater of Tofu Production

  • Yuling Wang,
  • Chunrong Li,
  • Zhengxin Shan,
  • Sijia Yin and ,
  • Yue Wang,
  • Congcong Wang,
  • Tianhui Liu,
  • Nifei Wang and
  • Qingbin Guo
  • + 4 authors+ 0 author

22 April 2022

Soybean oligosaccharides (SBOS) isolated from wastewater of tofu production were studied in terms of their structural characteristics and in vitro fermentation by human fecal inocula. Three sub-fractions named Z1 (14%), Z2 (13%), and Z3 (17%) were ob...

(This article belongs to the Special Issue Biopolymers: Structure-Function Relationship and Application)
  • Article
  • Open Access
37 Citations
3,583 Views
15 Pages

Modified Nano-Montmorillonite and Monensin Modulate In Vitro Ruminal Fermentation, Nutrient Degradability, and Methanogenesis Differently

  • Yosra Soltan,
  • Amr Morsy,
  • Nesrein Hashem,
  • Mahmoud Elazab and ,
  • Mohamed Sultan,
  • Haneen Marey,
  • Gomaa Abo El Lail,
  • Nagwa El-Desoky,
  • Nourhan Hosny and
  • Sobhy Sallam
  • + 7 authors+ 2 authors

19 October 2021

Two types of modified nano-montmorillonite (MNM) were developed by ion-exchange reactions using two different surfactants; sodium dodecyl sulfate (SDS) and cetyltrimethylammonium bromide (CETAB), to prepare MNMSDS and MNMCETAB, respectively. Both MNM...

(This article belongs to the Section Animal Nutrition)
  • Communication
  • Open Access
5 Citations
3,463 Views
9 Pages

Prokaryote Composition and Structure of Rumen Fluid before and after In Vitro Rumen Fermentation

  • Rajan Dhakal,
  • André Luis Alves Neves,
  • Rumakanta Sapkota,
  • Prabhat Khanal and
  • Hanne Helene Hansen

Background: This study aimed to investigate the impact of in vitro rumen fermentation (IVRF) on the microbiome structure and composition of rumen fluid before and after fermentation assays. Methods and Results: Six separate fermentation batches were...

(This article belongs to the Special Issue Application of Fermentation Technology in Animal Nutrition)
  • Article
  • Open Access
22 Citations
4,931 Views
15 Pages

In Vitro Modulation of Gut Microbiota and Metabolism by Cooked Cowpea and Black Bean

  • Catarina Teixeira-Guedes,
  • Tereza Sánchez-Moya,
  • Cristina Pereira-Wilson,
  • Gaspar Ros-Berruezo and
  • Rubén López-Nicolás

1 July 2020

Legumes are a rich source of a wide range of compounds that may represent an important tool to overcome gut dysbiosis. In this work, the prebiotic potential of two cooked legumes (cowpea and black bean) was investigated in comparison with potato:beef...

(This article belongs to the Special Issue New Challenges and Opportunities of Food Digestion)
  • Article
  • Open Access
19 Citations
4,656 Views
17 Pages

29 January 2021

Dietary fibers may have positive impact on health and wellbeing of pigs. The study examined physicochemical properties of two lignocelluloses (including and excluding bark), powdered cellulose, Aspergillus niger mycelium, lucerne chaff, soybean shell...

(This article belongs to the Special Issue Green Feeds and Byproducts)
  • Article
  • Open Access
51 Citations
10,735 Views
16 Pages

14 March 2021

Intestinal dysbiosis has been described in patients with certain gastrointestinal conditions including irritable bowel syndrome (IBS) and ulcerative colitis. 2′-fucosyllactose (2′-FL), a prebiotic human milk oligosaccharide, is considered bifidogenic...

(This article belongs to the Special Issue Prebiotics and Probiotics in the Management of Chronic Inflammatory Diseases)
  • Article
  • Open Access
29 Citations
7,116 Views
15 Pages

The Effects of Commonly Consumed Dietary Fibres on the Gut Microbiome and Its Fibre Fermentative Capacity in Adults with Inflammatory Bowel Disease in Remission

  • Konstantinos Gerasimidis,
  • Ben Nichols,
  • Mhairi McGowan,
  • Vaios Svolos and ,
  • Rodanthi Papadopoulou,
  • Margarita Kokkorou,
  • Martina Rebull,
  • Teresita Bello Gonzalez,
  • Richard Hansen and
  • Daniel Richard Gaya
  • + 6 authors+ 1 author

2 March 2022

Introduction: It has been suggested that the gut microbiome of patients with inflammatory bowel disease (IBD) is unable to ferment dietary fibre. This project explored the in vitro effect of fibre fermentation on production of short-chain fatty acids...

(This article belongs to the Special Issue Advances in Nutrition in Pediatric Gastroenterology)
  • Review
  • Open Access
52 Citations
6,219 Views
13 Pages

21 October 2020

In vitro rumen fermentation systems are often adapted to forage feeding conditions, with pH values ranging in a range close to neutrality (between 6.5 and 7.0). Several attempts using different buffers have been made to control incubation pH in order...

(This article belongs to the Special Issue Innovative Instruments and Methods to Analyse Feedstuffs)
  • Article
  • Open Access
1,177 Views
11 Pages

Effects of Codium fragile Extract Additive on In Vitro and In Vivo Methane Production and Fermentation Characteristics of Korean Native Steers (Hanwoo)

  • Seong-Shin Lee,
  • Seong-Uk Jo,
  • Hyun Sang Kim,
  • Ma-Ro Lee and ,
  • Su-Hyun An and
  • Hwan-Ku Kang
  • + 1 author+ 0 author

The present study was conducted to demonstrate the effects of Codium fragile extract on methane production using in vitro and in vivo experiments. An in vitro batch experiment was conducted to evaluate different inclusion levels of Codium fragile ext...

(This article belongs to the Special Issue Research Progress of Rumen Fermentation, 2nd Edition)
  • Abstract
  • Open Access
1 Citations
1,516 Views
2 Pages

Validation of an In Vitro Fermentation Model of Colonic Gas Production

  • Catriona L. Thomson,
  • Ada L. Garcia and
  • Christine A. Edwards

Background: The rapid production of gas during the colonic fermentation of highly soluble fermentable fibres may cause unpleasant gastrointestinal symptoms. In vivo feeding studies are often used to assess symptomatic response to fibres; however, in...

(This article belongs to the Proceedings of The 14th European Nutrition Conference FENS 2023)
  • Article
  • Open Access
6 Citations
2,166 Views
18 Pages

Ruminal Yeast Strain with Probiotic Potential: Isolation and Characterization and Its Effect on Rumen Fermentation In Vitro

  • Pin Song,
  • Xiaoran Yang,
  • Manman Hou,
  • Yue Chen and ,
  • Liping Liu,
  • Yuyan Feng and
  • Yingdong Ni
  • + 2 authors+ 0 author

The objective of this study is to isolate, identify, and describe rumen yeast strains and assess their probiotic potentials and effects on ruminal fermentation in vitro. Yeasts were isolated from ruminal fluids, yielding 59 strains from nine distinct...

(This article belongs to the Section Veterinary Microbiology)
  • Article
  • Open Access
1,411 Views
15 Pages

In Vitro Digestibility Methodology Modification to Account for Horse Foregut Digestion Using Diets with Increased Soluble Carbohydrates and Protein

  • Ryon W. Springer,
  • Trinette N. Jones,
  • Michaela R. Plowman,
  • Nichole M. Cherry and ,
  • Walter F. Owsley,
  • Tryon A. Wickersham and
  • James P. Muir
  • + 2 authors+ 0 author

Ruminant in vitro methodologies use washing with neutral detergent solution (NDS) after incubation to mimic ruminant digestion, which is physiologically different compared to that of horses. Our objectives were to determine if washing feed samples wi...

(This article belongs to the Section Microbial Metabolism, Physiology & Genetics)
  • Article
  • Open Access
10 Citations
4,324 Views
12 Pages

18 February 2020

The objective of this study was to evaluate the associative effects of rice straw with timothy hay and corn grain. Using an automated gas production system, in vitro ruminal fermentation was studied for six substrates: 100% rice straw, 100% timothy h...

(This article belongs to the Section Animal Nutrition)
  • Article
  • Open Access
19 Citations
6,336 Views
14 Pages

Effects of Olive (Olea europaea L.) Leaves with Antioxidant and Antimicrobial Activities on In Vitro Ruminal Fermentation and Methane Emission

  • Shin Ja Lee,
  • Hyun Sang Kim,
  • Jun Sik Eom,
  • You Young Choi and ,
  • Seong Uk Jo,
  • Gyo Moon Chu,
  • Yookyung Lee,
  • Jakyeom Seo,
  • Kyoung Hoon Kim and
  • Sung Sill Lee
  • + 5 authors+ 0 author

5 July 2021

We evaluated whether olive leaves (OLs) are effective as feed additives and supplements for ruminants and the potential methane reduction effects during in vitro fermentation. Two Hanwoo cows (460 ± 20 kg) equipped with cannula were fed Timothy hay a...

(This article belongs to the Special Issue Ruminant Nutrition)
  • Article
  • Open Access
53 Citations
9,646 Views
13 Pages

19 October 2020

The beneficial effects of ginger polyphenols have been extensively reported. However, their metabolic characteristics and health effects on gut microbiota are poor understood. The purpose of this study was to investigate the digestion stability of gi...

(This article belongs to the Section Phytochemicals and Human Health)
  • Feature Paper
  • Article
  • Open Access
625 Views
19 Pages

Effects of Colostrum Source, Dose and Processing on In Vitro Rumen Fermentation in Weaned Lambs

  • Jennifer Muñoz-Grein,
  • Amina Hind Chekikene,
  • Dimitra Graikini,
  • Lourdes Sánchez and ,
  • Manuel Fondevila and
  • Alejandro Belanche
  • + 1 author+ 0 author

6 June 2026

Young dairy ruminants often have limited rumen fermentative capacity, which can impair adaptation to solid diet during weaning. This study evaluated the effects of ruminant colostrum supplementation to enhance in vitro rumen fermentation at weaning....

(This article belongs to the Special Issue Advances in Nutritional Manipulation of Rumen Fermentation: Second Edition)
  • Article
  • Open Access
31 Citations
6,829 Views
16 Pages

Resistant Starch Is Actively Fermented by Infant Faecal Microbiota and Increases Microbial Diversity

  • Geetha Gopalsamy,
  • Elissa Mortimer,
  • Paul Greenfield,
  • Anthony R. Bird and ,
  • Graeme P. Young and
  • Claus T. Christophersen
  • + 1 author+ 0 author

14 June 2019

In adults, fermentation of high amylose maize starch (HAMS), a resistant starch (RS), has a prebiotic effect. Were such a capacity to exist in infants, intake of RS might programme the gut microbiota during a critical developmental period. This study...

(This article belongs to the Special Issue Early Life Nutrition and Future Health)
  • Article
  • Open Access
15 Citations
4,326 Views
13 Pages

The Effect of γ-Aminobutyric Acid Addition on In Vitro Ruminal Fermentation Characteristics and Methane Production of Diets Differing in Forage-to-Concentrate Ratio

  • Yan-Lu Wang,
  • Zhi-Hui Zhang,
  • Wei-Kang Wang,
  • Qi-Chao Wu and ,
  • Fan Zhang,
  • Wen-Juan Li,
  • Sheng-Li Li,
  • Wei Wang,
  • Zhi-Jun Cao and
  • Hong-Jian Yang
  • + 5 authors+ 0 author

Gamma-aminobutyric acid (GABA), known as the most abundant inhibitory neurotransmitter in the mammalian brain, can permeate ruminal epithelia by passive diffusion and enrich in the rumen environment. To explore whether the addition of GABA can regula...

(This article belongs to the Special Issue Rumen Fermentation)
  • Article
  • Open Access
1 Citations
527 Views
16 Pages

Effects of the Flavonoid Rutin and Monensin on In Vitro Rumen Fermentation of Total Mixed Rations Differing in Forage-to-Concentrate Ratio

  • Zekeriya Safa İnanç,
  • Mustafa Aslan,
  • Battal Yılmaz,
  • Deniz Şişman and ,
  • Erhan Çetin,
  • Oğuzhan Kahraman,
  • Mustafa Selçuk Alataş and
  • Huzur Derya Arık
  • + 3 authors+ 0 author

Background: Plant flavonoids are candidate alternatives to ionophores for modulating rumen fermentation, yet the intact glycoside rutin (quercetin-3-O-rutinoside) has received little attention. The objective of this study was to determine whether rut...

(This article belongs to the Special Issue Feed Additives and Rumen Fermentation)
  • Article
  • Open Access
7 Citations
2,404 Views
23 Pages

In Vitro Fermentation Characteristics of Purified Short-Chain Inulin and Inulin Neoseries Oligosaccharides Produced from Red Onions

  • Jirat Wongsanittayarak,
  • Apinun Kanpiengjai,
  • Nalapat Leangnim,
  • Supachawadee Soyprasert and ,
  • Kridsada Unban,
  • Saisamorn Lumyong,
  • Chartchai Khanongnuch and
  • Pairote Wongputtisin
  • + 3 authors+ 0 author

13 August 2025

In our previous study, short-chain inulin and inulin neoseries oligosaccharides (SCIINOs) were produced and purified from red onion juice. This study aimed to investigate the effect of SCIINOs on changes in the bacterial composition of fecal microbio...

(This article belongs to the Section Nutraceuticals, Functional Foods, and Novel Foods)
  • Article
  • Open Access
74 Citations
6,446 Views
18 Pages

Impact of Grain Sorghum Polyphenols on Microbiota of Normal Weight and Overweight/Obese Subjects during In Vitro Fecal Fermentation

  • Danielle Ashley,
  • Daya Marasini,
  • Cindi Brownmiller,
  • Jung Ae Lee and ,
  • Franck Carbonero and
  • Sun-Ok Lee
  • + 1 author+ 0 author

22 January 2019

The human gut microbiota is considered as a crucial mediator between diet and gut homeostasis and body weight. The unique polyphenolic profile of sorghum bran may promote gastrointestinal health by modulating the microbiota. This study evaluated gut...

  • Article
  • Open Access
11 Citations
3,910 Views
15 Pages

Evaluation of the Antibacterial and Prebiotic Potential of Ascophyllum nodosum and Its Extracts Using Selected Bacterial Members of the Pig Gastrointestinal Microbiota

  • Brigkita Venardou,
  • John V. O’Doherty,
  • Marco Garcia-Vaquero,
  • Claire Kiely and ,
  • Gaurav Rajauria,
  • Mary J. McDonnell,
  • Marion T. Ryan and
  • Torres Sweeney
  • + 3 authors+ 0 author

30 December 2021

Ascophyllum nodosum and its extracts are promising antibacterial and prebiotic dietary supplements for pigs. The objectives of this study were to evaluate the effects of the increasing concentrations of: (1) two whole biomass samples of A. nodosum wi...

  • Article
  • Open Access
21 Citations
5,569 Views
14 Pages

Ruminal Fermentation, Growth Rate and Methane Production in Sheep Fed Diets Including White Clover, Soybean Meal or Porphyra sp.

  • Vibeke Lind,
  • Martin R. Weisbjerg,
  • Grete M. Jørgensen,
  • Júlia E. Fernandez-Yepes and ,
  • Lesly Arbesú and
  • Eduarda Molina-Alcaide
  • + 1 author+ 0 author

2 January 2020

The aim of the present work was to investigate the potential of Porphyra sp. as an alternative source of protein to soybean meal in diets for sheep. Our experimental treatments included a control diet (CON) based on grass silage and crushed oats and...

(This article belongs to the Section Animal Nutrition)
  • Article
  • Open Access
8 Citations
1,973 Views
22 Pages

In Vitro Assessment of Essential Oils for Their Methane Mitigation Potential and Impact on Rumen Fermentation in Cattle

  • Memoona Nasir,
  • Rokia Temmar,
  • Abdelhacib Kihal,
  • José Luis Repetto and ,
  • Cecilia Cajarville,
  • Gwenael Forgeard,
  • Jihane Guihard,
  • María Rodríguez-Prado,
  • Susana M. Martín-Orúe and
  • Sergio Calsamiglia
  • + 6 authors+ 1 author

24 January 2026

Strategies to suppress methanogenesis must preserve the functional integrity of the rumen microbial ecosystem. Essential oils (EOs) have emerged as promising modulators of rumen microbial function, though their responses vary widely with chemical str...

(This article belongs to the Section Cattle)
  • Article
  • Open Access
22 Citations
4,628 Views
16 Pages

17 February 2023

Agaricus bisporus polysaccharide (ABP) is an important active component in edible mushrooms, but its interaction with gut microbiota is unclear. Therefore, this study evaluated the effect of ABP on the composition and metabolites of human gut microbi...

(This article belongs to the Special Issue Functional Foods: Process Technology, Beneficial Effects and Interaction with Gut Microbiota)
  • Communication
  • Open Access
14 Citations
9,583 Views
9 Pages

16 October 2014

Microbial biotransformation is a great model system to produce drugs and biologically active compounds. In this study, we elucidated the fermentation and production of an anti-cancer agent from a microbial process for regiospecific hydroxylation of r...

(This article belongs to the Section Molecular Diversity)
  • Article
  • Open Access
6 Citations
4,408 Views
14 Pages

Moringa oleifera L.: A Potential Plant for Greenhouse Gas Mitigation in Temperate Agriculture Systems

  • Adrian Mangar,
  • Stefan Muetzel,
  • Anurag Malik,
  • Axay Bhuker and ,
  • Virender Mor,
  • Adrian Molenaar,
  • Svetla Sofkova-Bobcheva,
  • Sarah Pain and
  • Craig McGill
  • + 4 authors+ 0 author

The earth’s climate is changing because of the increase in greenhouse gas (GHG) concentration, to which livestock is a major contributor. Methane produced from cattle can be reduced by using high quality forages. This study compared the GHG pro...

(This article belongs to the Section Agricultural Systems and Management)
  • Article
  • Open Access
2 Citations
745 Views
23 Pages

29 April 2026

Essential oil-based feed additives have been proposed as a practical strategy to mitigate enteric methane emissions in ruminants, but their effects are not always consistent. The objective of this study was to evaluate the effects of dietary suppleme...

(This article belongs to the Special Issue Dietary Regulation of the Rumen Microbiome and Fermentation)
  • Article
  • Open Access
47 Citations
5,703 Views
11 Pages

5 April 2021

This In Vitro study was conducted to investigate the impact of plant-bioactives extract (PE), a combination of garlic powder and bitter orange extract, on methane production, rumen fermentation, and digestibility in different feeding models. The diet...

(This article belongs to the Special Issue Plant-Based Alternatives to Antimicrobial in Animal Feed)
  • Article
  • Open Access
1,056 Views
15 Pages

Comparative Evaluation of Crushed Almonds, Peanut Skins, and Water Hyacinth as Alternative Feed Resources for Ruminants: Fermentation Responses and Methane Mitigation Potential

  • Ahmed O. Matti-Alapafuja,
  • Eslam Ahmed,
  • Ana Maria da Costa Goncalves Noronha,
  • Rukayat O. Matti-Sanni and ,
  • Masaaki Hanada,
  • Naoki Fukuma and
  • Takehiro Nishida
  • + 2 authors+ 0 author

4 February 2026

Agro-residues and aquatic biomass are potential sustainable ruminant feeds. However, their effects on rumen digestibility, fermentation, and greenhouse gas emissions remain insufficiently characterized. This study used two in vitro batch culture expe...

(This article belongs to the Special Issue Alternative Feeds for Ruminants: Sustainability and Nutritional Innovation)
  • Article
  • Open Access
25 Citations
3,194 Views
16 Pages

RG-I Domain Matters to the In Vitro Fermentation Characteristics of Pectic Polysaccharides Recycled from Citrus Canning Processing Water

  • Jiaxiong Wu,
  • Sihuan Shen,
  • Qiang Gao,
  • Chengxiao Yu and ,
  • Huan Cheng,
  • Haibo Pan,
  • Shiguo Chen,
  • Xingqian Ye and
  • Jianle Chen
  • + 4 authors+ 0 author

23 February 2023

Canned citrus is a major citrus product that is popular around the world. However, the canning process discharges large amounts of high-chemical oxygen demand wastewater, which contains many functional polysaccharides. Herein, we recovered three diff...

(This article belongs to the Section Food Nutrition)

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