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Search Results (623)

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19 pages, 3458 KiB  
Article
Experimental and Numerical Analyses of Diameter Reduction via Laser Turning with Respect to Laser Parameters
by Emin O. Bastekeli, Haci A. Tasdemir, Adil Yucel and Buse Ortac Bastekeli
J. Manuf. Mater. Process. 2025, 9(8), 258; https://doi.org/10.3390/jmmp9080258 (registering DOI) - 1 Aug 2025
Abstract
In this study, a novel direct laser beam turning (DLBT) approach is proposed for the precision machining of AISI 308L austenitic stainless steel, which eliminates the need for cutting tools and thereby eradicates tool wear and vibration-induced surface irregularities. A nanosecond-pulsed Nd:YAG fiber [...] Read more.
In this study, a novel direct laser beam turning (DLBT) approach is proposed for the precision machining of AISI 308L austenitic stainless steel, which eliminates the need for cutting tools and thereby eradicates tool wear and vibration-induced surface irregularities. A nanosecond-pulsed Nd:YAG fiber laser (λ = 1064 nm, spot size = 0.05 mm) was used, and Ø1.6 mm × 20 mm cylindrical rods were processed under ambient conditions without auxiliary cooling. The experimental framework systematically evaluated the influence of scanning speed, pulse frequency, and the number of laser passes on dimensional accuracy and material removal efficiency. The results indicate that a maximum diameter reduction of 0.271 mm was achieved at a scanning speed of 3200 mm/s and 50 kHz, whereas 0.195 mm was attained at 6400 mm/s and 200 kHz. A robust second-order polynomial correlation (R2 = 0.99) was established between diameter reduction and the number of passes, revealing the high predictability of the process. Crucially, when the scanning speed was doubled, the effective fluence was halved, considerably influencing the ablation characteristics. Despite the low fluence, evidence of material evaporation at elevated frequencies due to the incubation effect underscores the complex photothermal dynamics governing the process. This work constitutes the first comprehensive quantification of pass-dependent diameter modulation in DLBT and introduces a transformative, noncontact micromachining strategy for hard-to-machine alloys. The demonstrated precision, repeatability, and thermal control position DLBT as a promising candidate for next-generation manufacturing of high-performance miniaturized components. Full article
15 pages, 7581 KiB  
Article
Complete Chloroplast Genome Sequence of Medicago falcata: Comparative Analyses with Other Species of Medicago
by Wei Duan, Xueli Zhang, Yuxiang Wang and Qian Li
Agronomy 2025, 15(8), 1856; https://doi.org/10.3390/agronomy15081856 - 31 Jul 2025
Viewed by 32
Abstract
Medicago falcata is one of the most important perennial forage legumes in the Medicago genus. In this study, we reported the complete chloroplast genome of two M. falcata ecotypes grown in different regions, and compared them with those of Medicago truncatula and Medicago [...] Read more.
Medicago falcata is one of the most important perennial forage legumes in the Medicago genus. In this study, we reported the complete chloroplast genome of two M. falcata ecotypes grown in different regions, and compared them with those of Medicago truncatula and Medicago sativa. We found that the M. falcata chloroplast genome lacks a typical quadripartite structure, containing 78 protein-coding genes, 30 tRNA genes, and four ribosomal RNA genes. They shared high conservation in size, genome structure, gene order, gene number and GC content with those of M. truncatula and M. sativa. High nucleotide diversity occurred in the coding gene regions of rps16, rps3, and ycf4 genes. Meanwhile, mononucleotide repeats are the most abundant repeat type, followed by the di-, tri-, tetra-, and pentanucleotides, and forward repeats were more abundant than reverse and palindrome repeats for all these three Medicago species. Phylogenetic analyses using both coding sequences and complete chloroplast genomes revealed that M. falcata shares the closest phylogenetic relationship with M. hybrida and M. sativa. This study provided valuable information for further studies on the genetic relationship of the Medicago genus. Full article
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16 pages, 2138 KiB  
Article
Precise Identification of Higher-Order Repeats (HORs) in T2T-CHM13 Assembly of Human Chromosome 21—Novel 52mer HOR and Failures of Hg38 Assembly
by Matko Glunčić, Ines Vlahović, Marija Rosandić and Vladimir Paar
Genes 2025, 16(8), 885; https://doi.org/10.3390/genes16080885 - 27 Jul 2025
Viewed by 227
Abstract
Background: Centromeric alpha satellite DNA is organized into higher-order repeats (HORs), whose precise structure is often difficult to resolve in standard genome assemblies. The recent telomere-to-telomere (T2T) assembly of the human genome enables complete analysis of centromeric regions, including the full structure of [...] Read more.
Background: Centromeric alpha satellite DNA is organized into higher-order repeats (HORs), whose precise structure is often difficult to resolve in standard genome assemblies. The recent telomere-to-telomere (T2T) assembly of the human genome enables complete analysis of centromeric regions, including the full structure of HOR arrays. Methods: We applied the novel high-precision GRMhor algorithm to the complete T2T-CHM13 assembly of human chromosome 21. GRMhor integrates global repeat map (GRM) and monomer distance (MD) diagrams to accurately identify, classify, and visualize HORs and their subfragments. Results: The analysis revealed a novel Cascading 11mer HOR array, in which each canonical HOR copy comprises 11 monomers belonging to 10 different monomer types. Subfragments with periodicities of 4, 7, 9, and 20 were identified within the array. A second, complex 23/25mer HOR array of mixed Willard’s/Cascading type was also detected. In contrast to the hg38 assembly, where a dominant 8mer and 33mer HOR were previously annotated, these structures were absent in the T2T-CHM13 assembly, highlighting the limitations of hg38. Notably, we discovered a novel 52mer HOR—the longest alpha satellite HOR unit reported in the human genome to date. Several subfragment repeats correspond to alphoid subfamilies previously identified using restriction enzyme digestion, but are here resolved with higher structural precision. Conclusions: Our findings demonstrate the power of GRMhor in resolving complex and previously undetected alpha satellite architectures, including the longest canonical HOR unit identified in the human genome. The precise delineation of superHORs, Cascading structures, and HOR subfragments provides unprecedented insight into the fine-scale organization of the centromeric region of chromosome 21. These results highlight both the inadequacy of earlier assemblies, such as hg38, and the critical importance of complete telomere-to-telomere assemblies for accurately characterizing centromeric DNA. Full article
(This article belongs to the Section Cytogenomics)
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29 pages, 4727 KiB  
Article
A Low-Code Visual Framework for Deep Learning-Based Remaining Useful Life Prediction
by Yuhan Lin, Jianhua Chen, Sijuan Chen, Yunfei Nie, Ming Wang, Bing Zhang, Ming Yang and Jipu Wang
Processes 2025, 13(8), 2366; https://doi.org/10.3390/pr13082366 - 25 Jul 2025
Viewed by 281
Abstract
In the context of intelligent manufacturing, deep learning-based remaining useful life (RUL) prediction has become a research hotspot in the field of Prognostics and Health Management (PHM). The traditional approaches often require strong programming skills and repeated model building, posing a high entry [...] Read more.
In the context of intelligent manufacturing, deep learning-based remaining useful life (RUL) prediction has become a research hotspot in the field of Prognostics and Health Management (PHM). The traditional approaches often require strong programming skills and repeated model building, posing a high entry barrier. To address this, in this study, we propose and implement a visualization tool that supports multiple model selections and result visualization and eliminates the need for complex coding and mathematical derivations, helping users to efficiently conduct RUL prediction with lower technical requirements. This study introduces and summarizes various novel neural network models for DL-based RUL prediction. The models are validated using the NASA and HNEI datasets, and among the validated models, the LSTM model best met the requirements for remaining useful life (RUL) prediction. In order to achieve the low-code usage of deep learning for RUL prediction, the following tasks were performed: (1) multiple models were developed using the Python (3.9.18) language and were implemented on the PyTorch (1.12.1) framework, providing users with the freedom to choose their desired model; (2) a user-friendly and low-code RUL prediction interface was built using Streamlit, enabling users to easily make predictions; (3) the visualization of prediction results was implemented using Matplotlib (3.8.2), allowing users to better understand and analyze the results. In addition, the tool offers functionalities such as automatic hyperparameter tuning to optimize the performance of the prediction model and reduce the complexity of operations. Full article
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22 pages, 3003 KiB  
Article
Engineering Fe-Modified Zeolitic Imidazolate Frameworks (Fe-ZIF-8 and Fe-ZIF-67) via In Situ Thermal Synthesis for Enhanced Adsorption of Malachite Green from Aqueous Solutions: A Comprehensive Study of Isotherms, Kinetics, and Thermodynamics
by Alireza Pourvahabi Anbari, Shima Rahmdel Delcheh, Muhammad Kashif, Alireza Ranjbari, Mohammad Karbalaei Akbari, Serge Zhuiykov, Philippe M. Heynderickx and Francis Verpoort
Nanomaterials 2025, 15(14), 1097; https://doi.org/10.3390/nano15141097 - 15 Jul 2025
Viewed by 434
Abstract
Given the adverse effects of organic dyes from aqueous solutions on human physiology and the ecological system, establishing an effective system for their elimination is imperative. This study employs the in situ thermal (IST) method to synthesize nanocomposites comprising zeolitic imidazole frameworks, specifically [...] Read more.
Given the adverse effects of organic dyes from aqueous solutions on human physiology and the ecological system, establishing an effective system for their elimination is imperative. This study employs the in situ thermal (IST) method to synthesize nanocomposites comprising zeolitic imidazole frameworks, specifically Fe-ZIF-8 and Fe-ZIF-67. The investigation offers a comprehensive evaluation of the properties of these nano-adsorbents for the removal of malachite green (MG). The results indicate a significantly increased adsorption capacity of up to 495 and 552 mg g−1 for Fe-ZIF-8 and Fe-ZIF-67, respectively. Furthermore, they demonstrate removal efficiencies of up to 90% and 95% for MG, respectively. Parameters associated with the adsorption process are derived from isotherms and removal kinetics, specifically the Freundlich model and the pseudo-second-order kinetics model, respectively. The enhanced adsorption capacity observed in Fe-ZIF-8 and Fe-ZIF-67 can be attributed to π–π stacking interactions, hydrogen bonding, and electrostatic attraction. After undergoing three cycles, both adsorbents consistently exhibit a high removal efficiency of approximately 85%, indicating notable structural integrity and outstanding potential for repeated use. The examined adsorbents display exceptional efficacy, favorable stability, and substantial specific surface area, underscoring their remarkable adsorption capabilities. The nanocomposites comprising Fe-ZIF-8 and Fe-ZIF-67 demonstrate considerable potential as highly favorable options for the elimination of MG and other cationic organic dyes from aqueous environments. Full article
(This article belongs to the Special Issue The Interaction of Electron Phenomena on the Mesoscopic Scale)
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13 pages, 1126 KiB  
Article
Mitochondrial Genomes of the Blood Flukes Cardicola forsteri and Cardicola orientalis (Trematoda: Aporocotylidae)
by Jemma Hudson, Sunita B. Sumanam, Bronwyn E. Campbell, Lachlan Coff, Barbara F. Nowak, Paul A. Ramsland, Neil D. Young and Nathan J. Bott
Pathogens 2025, 14(7), 680; https://doi.org/10.3390/pathogens14070680 - 10 Jul 2025
Viewed by 365
Abstract
Parasitic diseases can be a significant constraint on aquaculture industries, which continue to develop in response to the rise in global demand for sustainable protein sources. Blood flukes, Cardicola forsteri and Cardicola orientalis, are economically significant parasites of Southern bluefin tuna (Australia), [...] Read more.
Parasitic diseases can be a significant constraint on aquaculture industries, which continue to develop in response to the rise in global demand for sustainable protein sources. Blood flukes, Cardicola forsteri and Cardicola orientalis, are economically significant parasites of Southern bluefin tuna (Australia), Pacific bluefin tuna (Japan), and Atlantic bluefin tuna (Mediterranean) as they are responsible for blood vessel obstruction in the gills leading to branchitis and mortalities when untreated. Here, we have defined the mitochondrial genomes for these species—the first for any aporocotylids. Oxford nanopore long-read sequencing was used to sequence C. orientalis from a single individual. The mitochondrial genome of C. forsteri was assembled and curated from available sequence data. Both Cardicola spp. mitogenomes contained 12 protein coding, 2 ribosomal and 22 tRNA genes, with the gene order matching that of Asian schistosomes. A control region was identified for each species which contained long and short repeats; the region for C. forsteri was longest, and the overall pattern differed between the two species. A surprisingly high nucleotide diversity was observed between the two species, generating interest into the mitochondrial genes of related species. This paper provides a useful resource for future genetics-based research of aporocotylids and other flatworm parasites of socioeconomic significance. Full article
(This article belongs to the Special Issue Genomic Insights into Parasites of Fishes)
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14 pages, 2643 KiB  
Article
Characteristics of a Miniature Fiber-Optic Inorganic Scintillator Detector for Electron-Beam Therapy Dosimetry
by Zhuang Qin, Ziyin Chen, Bo He, Weimin Sun and Yachen Gao
Sensors 2025, 25(14), 4243; https://doi.org/10.3390/s25144243 - 8 Jul 2025
Viewed by 319
Abstract
Over the past few decades, electron beams have been widely used to treat malignant and benign tumors located in the superficial regions of patients. This study utilized an inorganic scintillator (Gd2O2S:Tb)-based radiation detector to test its response characteristics in [...] Read more.
Over the past few decades, electron beams have been widely used to treat malignant and benign tumors located in the superficial regions of patients. This study utilized an inorganic scintillator (Gd2O2S:Tb)-based radiation detector to test its response characteristics in an electron-beam radiotherapy environment, in order to determine the application potential of this detector in electron-beam therapy. Owing to the extremely high time resolution of this inorganic scintillator detector (ISD), it is even capable of measuring the pulse information of electron beams generated by the accelerator. The results indicate that for certain accelerator models, such as the IX3937, the pulse pattern of the output electron beam is notably different from that during the output of X-rays, showing no significant periodicity. The experimental results also demonstrate that this ISD exhibits excellent repeatability and dose linearity (R2 of 0.9993) when measuring electron beams. Finally, the PDD (Percentage Depth Dose) curves and OAR (Off-Axis Ratio) curves of the ISD were also tested under electron-beam conditions at 6 MeV and 9 MeV, respectively. Full article
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17 pages, 1064 KiB  
Article
Assessment of Abuse Potential of Three Indazole-Carboxamide Synthetic Cannabinoids 5F-ADB, MDMB-4en-PINACA and ADB-4en-PINACA
by Yanling Qiao, Xuesong Shi, Kaixi Li, Lixin Kuai, Xiangyu Li, Bin Di and Peng Xu
Int. J. Mol. Sci. 2025, 26(13), 6409; https://doi.org/10.3390/ijms26136409 - 3 Jul 2025
Viewed by 450
Abstract
5F-ADB, MDMB-4en-PINACA and ADB-4en-PINACA are three potent indazole-carboxamide synthetic cannabinoids (SCs) that have been widely abused in recent years. However, the pharmacological research on these compounds remains limited, especially in vivo research data. The purpose of the present study was to investigate the [...] Read more.
5F-ADB, MDMB-4en-PINACA and ADB-4en-PINACA are three potent indazole-carboxamide synthetic cannabinoids (SCs) that have been widely abused in recent years. However, the pharmacological research on these compounds remains limited, especially in vivo research data. The purpose of the present study was to investigate the pharmacological effects of 5F-ADB, MDMB-4en-PINACA and ADB-4en-PINACA in mice, comparing their in vivo effects with those caused by Δ9-tetrahydrocannabinol (Δ9-THC), the main psychoactive substance in cannabis. We evaluated the cannabinoid-specific pharmacological effects of 5F-ADB, MDMB-4en-PINACA and ADB-4en-PINACA using the tetrad assay (locomotion inhibition, hypothermia, analgesia and catalepsy). Then we conducted conditioned place preference (CPP) and precipitated withdrawal assay to assess the rewarding effect and physical dependence, with Δ9-THC as a positive control. The results showed that all of the three SCs exhibited potential tetrad effects in a dose-dependent manner, with median effective dose (ED50) values ranging from 0.03 to 0.77 mg/kg. In the CPP tests, they all exhibited a significant biphasic effect of conditioned place preference (CPP) and conditioned place aversion (CPA). A significant increase in paw tremors and head twitches was observed in the rimonabant-precipitated withdrawal assay, indicating that the repeated administration of these SCs can lead to potential physical dependence. All effective doses were lower than Δ9-THC. These findings strongly suggested that the three SCs exhibited similar but stronger cannabinoid-specific tetrad effects, rewarding effect and physical dependence compared with Δ9-THC, indicating their high abuse potential and possible threats to human health. The rank order of abuse potential for these drugs was 5F-ADB > MDMB-4en-PINACA > ADB-4en-PINACA > Δ9-THC. Full article
(This article belongs to the Section Molecular Pharmacology)
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20 pages, 6684 KiB  
Article
Study on Rheological Properties of Nano Titanium Dioxide High-Viscosity Modified Asphalt
by Ruiduo Li, Yanzhao Yuan, Yabing Ma, Zhigang Wang, Shikang Zhou and Liqin Li
Coatings 2025, 15(6), 717; https://doi.org/10.3390/coatings15060717 - 14 Jun 2025
Viewed by 488
Abstract
The research on nano titanium dioxide (nano-TiO2)-modified asphalt has received increasing attention. However, further studies are required in order to ascertain the influence of the phenomenon under discussion on the rheological characteristics and ability to resist deformation of bitumen. In the [...] Read more.
The research on nano titanium dioxide (nano-TiO2)-modified asphalt has received increasing attention. However, further studies are required in order to ascertain the influence of the phenomenon under discussion on the rheological characteristics and ability to resist deformation of bitumen. In the present study, modified bitumen was formulated by adding nano titanium dioxide. Physical property tests, temperature scanning tests, frequency scanning tests, repeated creep recovery tests, bending creep stiffness tests, and long-term aging performance experiments were carried out on the specimen of asphalt that had undergone the process of modification in order to assess the rheological characteristics and ability to resist unrecoverable deformation of the modified bitumen at different temperatures, both high and low. The outcomes of the repeated creep recovery experiment were analyzed using Burgers and fractional derivative models. The microstructure of nano-TiO2 high-viscosity modified asphalt was observed by Scanning Electron Microscope(SEM). In order to ascertain the manner in which base bitumen and nano-TiO2 interact, Fourier transform infrared spectroscopy (FTIR) was utilized in the study. The results show that the thermal stability and prolonged aging resistant properties of the modified bitumen binder improved, but nano-TiO2 made the asphalt binder weaker and more likely to crack at lower temperatures. Taking into account the variation in the road performance of the bitumen binder, 6% is recommended as the optimal amount of nano-TiO2. Nano-TiO2 was mainly uniformly distributed in asphalt and nano-TiO2 was physically mixed with asphalt. In comparison with the Burgers model, the present fractional derivative empirical creep model can fit the creep test data of the asphalt binder well with the advantages of high accuracy and few parameters. The research results provide a reference for promoting the implementation of modified bitumen incorporating nano-TiO2. Full article
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31 pages, 27915 KiB  
Article
Robust Land-Surface Parameterisation for Repeated Topographic Surveys in Dynamic Environments with Adaptive State-Space Models
by Daniel R. Newman and Yuichi S. Hayakawa
Remote Sens. 2025, 17(12), 1993; https://doi.org/10.3390/rs17121993 - 9 Jun 2025
Viewed by 325
Abstract
The proliferation of unmanned aerial vehicles has enabled cost-effective topographic surveys to be collected at high frequencies. However, terrain analyses rarely take advantage of the information provided by repeated observations. As a result, the ability to characterize the topographic surface and surface changes [...] Read more.
The proliferation of unmanned aerial vehicles has enabled cost-effective topographic surveys to be collected at high frequencies. However, terrain analyses rarely take advantage of the information provided by repeated observations. As a result, the ability to characterize the topographic surface and surface changes resulting from dynamic surface processes is undermined by the accumulation and propagation of uncertainty. Accurate surface model parameterisation benefits all derived local characteristics, such as surface slope and curvature. To address this, several advances in adaptive Kalman filtering were evaluated with respect to surface model coefficient estimation error, and the sensitivity to initial noise statistics was tested. A simple surface with exactly known parameters was simulated for a set of common geomorphological change regimes and survey temporal distributions. The results confirmed that all Kalman filters reduced error relative to a least-squares estimator under static conditions. Only adaptive filters outperformed a least-squares estimator under dynamic conditions, where average error was often reduced by approximately 50%, and up to 80%. However, adaptive Kalman filters exhibited up to a 40% increase in maximum error relative to a least-squares estimator in response to sudden surface changes, returning to lower error within 15–25 epochs. The adaptive Kalman filters were sensitive to the overestimation of measurement noise greater than two orders of magnitude from the true noise, resulting in degraded performance. Adaptive Kalman filters consistently and substantially reduced spatio-temporal coefficient error, which includes an estimate of local vertical displacement. The results demonstrated that adaptive Kalman filters address challenges related to the sensitivity of conventional Kalman filter performance to sub-optimal parameterisation, and they are robust estimators for both terrain analysis and surface change analysis when multiple surveys are available. Therefore, adaptive Kalman filters are well-suited for analyzing the local properties of topographic surfaces in general. Full article
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8 pages, 451 KiB  
Article
Exploring the Impact of the COVID-19 Pandemic on Student Mental Health: A Repeated Cross-Sectional Study
by Joanne Worsley, Jason McIntyre and Rhiannon Corcoran
Int. J. Environ. Res. Public Health 2025, 22(6), 913; https://doi.org/10.3390/ijerph22060913 - 8 Jun 2025
Viewed by 746
Abstract
Background: Although mental health among students has become a pressing public concern over recent years, the COVID-19 pandemic introduced new stressors, which may further increase the mental health burden for them. While past work has investigated links between pandemic related factors and [...] Read more.
Background: Although mental health among students has become a pressing public concern over recent years, the COVID-19 pandemic introduced new stressors, which may further increase the mental health burden for them. While past work has investigated links between pandemic related factors and student mental health and wellbeing, there is conflicting evidence around some symptoms (e.g., anxiety) and little work has focused on less common mental health conditions (e.g., eating disorders). Aims: The current study aimed to detail the prevalence of mental distress in the student population at an early stage of the COVID-19 pandemic and compare university students’ mental health before and during the COVID-19 pandemic. Specifically, we aimed to compare levels of depression, anxiety, and eating disorders in a large sample of students. Methods: We analysed data from a repeated cross-sectional survey on different samples of UK university students before the pandemic (n = 4812) and during the pandemic (n = 3817). Results: There were high levels of depression and anxiety during the COVID-19 pandemic, with more than 50% experiencing levels above the clinical cut-offs. Findings revealed a significant increase in symptoms of depression and anxiety from pre- to mid-pandemic as well as a significant increase in the prevalence of eating disorders. Conclusions: By late 2020, mental health in the student population had deteriorated compared to pre-pandemic levels. These findings provide evidence for increased levels of depression, anxiety, and eating disorders related to the COVID-19 pandemic. There is a need for better preparedness for future crises in order to mitigate the impact on student mental health. Full article
(This article belongs to the Section Behavioral and Mental Health)
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14 pages, 2864 KiB  
Article
Continuous-Control-Set Model Predictive Control Strategy for MMC-UPQC Under Non-Ideal Conditions
by Lianghua Chen, Jianping Zhou, Jiayu Zhai, Lisheng Yang, Xudong Qian and Zhiyong Tao
Energies 2025, 18(11), 2946; https://doi.org/10.3390/en18112946 - 3 Jun 2025
Viewed by 412
Abstract
In the MMC-based unified power quality conditioner (MMC-UPQC), the computational burden of finite-control-set model predictive control (FCS-MPC) increases rapidly with the number of MMC submodules. Meanwhile, conventional linear and nonlinear control methods suffer from limited compensation accuracy. To address this, a control strategy [...] Read more.
In the MMC-based unified power quality conditioner (MMC-UPQC), the computational burden of finite-control-set model predictive control (FCS-MPC) increases rapidly with the number of MMC submodules. Meanwhile, conventional linear and nonlinear control methods suffer from limited compensation accuracy. To address this, a control strategy combining continuous-control-set model predictive control (CCS-MPC) and phase-shifted carrier pulse-width modulation (PSC-PWM) is proposed. CCS-MPC performs repeated time-domain optimization based on the system model. It offers advantages such as fast dynamic response and ease of implementation, thereby enhancing both dynamic and steady-state performance, as well as compensation effectiveness. Unlike FCS-MPC, the computational complexity of CCS-MPC combined with PSC-PWM does not depend on the number of submodules, which significantly reduces the overall computational burden. Simulation results verify that the proposed method exhibits superior performance under three scenarios: grid-side voltage unbalance, high-order harmonic injection, and nonlinear load connection. Compared with the linear PI control strategy and the nonlinear passivity-based control strategy, the proposed method significantly enhances power quality and system robustness. Full article
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19 pages, 1985 KiB  
Article
Targeting of Epithelial Cell Adhesion Molecule-Expressing Malignant Tumors Using an Albumin-Binding Domain-Fused Designed Ankyrin Repeat Protein: Effect of the Molecular Architecture
by Vladimir Tolmachev, Anzhelika Vorobyeva, Alia Hani Binti Rosly, Javad Garousi, Yongsheng Liu, Torbjörn Gräslund, Eleftherios Papalanis, Alexey Schulga, Elena Konovalova, Anna Orlova, Sergey M. Deyev and Maryam Oroujeni
Int. J. Mol. Sci. 2025, 26(11), 5236; https://doi.org/10.3390/ijms26115236 (registering DOI) - 29 May 2025
Viewed by 850
Abstract
Designed ankyrin repeat protein (DARPin) Ec1, a small scaffold protein (18 kDa), binds with high affinity the epithelial cell adhesion molecule (EpCAM) that is overexpressed in several carcinomas. To enhance the targeted delivery of cytotoxic drugs using Ec1, we investigated the potential of [...] Read more.
Designed ankyrin repeat protein (DARPin) Ec1, a small scaffold protein (18 kDa), binds with high affinity the epithelial cell adhesion molecule (EpCAM) that is overexpressed in several carcinomas. To enhance the targeted delivery of cytotoxic drugs using Ec1, we investigated the potential of fusing Ec1 with an albumin-binding domain (ABD) to improve its circulation time and decrease renal uptake. Two fusion proteins were created, Ec1-ABD, with the ABD at the C-terminus, and ABD-Ec1, with the ABD at the N-terminus. Both variants were labeled with 111In. ABD-fused variants bound specifically to EpCAM-expressing cells with picomolar affinity. Adding human albumin reduced the affinity. This effect was more pronounced for Ec1-ABD; however, the affinity remained in the subnanomolar range. The position of the ABD did not influence the internalization rate of both variants by human cancer cells. In mouse models with human cancer xenografts, both variants demonstrated over 10-fold lower renal uptake compared to the Ec1. Tumor uptake of the ABD-fused variants was higher than the uptake of Ec1. ABD-Ec1 provided two-fold higher tumor uptake, indicating fusion with an ABD as a promising way to modulate the targeting properties of an Ec1-based construct. However, the effect of fusion depends on the order of the domains. Full article
(This article belongs to the Section Molecular Pathology, Diagnostics, and Therapeutics)
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22 pages, 20735 KiB  
Article
High-Throughput ORB Feature Extraction on Zynq SoC for Real-Time Structure-from-Motion Pipelines
by Panteleimon Stamatakis and John Vourvoulakis
J. Imaging 2025, 11(6), 178; https://doi.org/10.3390/jimaging11060178 - 28 May 2025
Viewed by 603
Abstract
This paper presents a real-time system for feature detection and description, the first stage in a structure-from-motion (SfM) pipeline. The proposed system leverages an optimized version of the ORB algorithm (oriented FAST and rotated BRIEF) implemented on the Digilent Zybo Z7020 FPGA board [...] Read more.
This paper presents a real-time system for feature detection and description, the first stage in a structure-from-motion (SfM) pipeline. The proposed system leverages an optimized version of the ORB algorithm (oriented FAST and rotated BRIEF) implemented on the Digilent Zybo Z7020 FPGA board equipped with the Xilinx Zynq-7000 SoC. The system accepts real-time video input (60 fps, 1920 × 1080 resolution, 24-bit color) via HDMI or a camera module. In order to support high frame rates for full-HD images, a double-data-rate pipeline scheme was adopted for Harris functions. Gray-scale video with features identified in red is exported through a separate HDMI port. Feature descriptors are calculated inside the FPGA by Zynq’s programmable logic and verified using Xilinx’s ILA IP block on a connected computer running Vivado. The implemented system achieves a latency of 192.7 microseconds, which is suitable for real-time applications. The proposed architecture is evaluated in terms of repeatability, matching retention and matching accuracy in several image transformations. It meets satisfactory accuracy and performance considering that there are slight changes between successive frames. This work paves the way for future research on the implementation of the remaining stages of a real-time SfM pipeline on the proposed hardware platform. Full article
(This article belongs to the Special Issue Recent Techniques in Image Feature Extraction)
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15 pages, 3421 KiB  
Article
CRISPR-Cas12a/Aurora Deoxyribozyme Cascade: A Label-Free Ultrasensitive Platform for Rapid Salmonella Detection
by Cong Shi, Huimin Tan, Zhou Yu, Weilin Li, Yan Man and Qinghai Zhang
Foods 2025, 14(11), 1892; https://doi.org/10.3390/foods14111892 - 26 May 2025
Viewed by 675
Abstract
The rapid and ultrasensitive detection of Salmonella holds strategic significance for food safety surveillance and public health protection systems. This study innovatively developed a label-free biosensing platform based on the synergistic integration of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-Cas12a and the fluorescent [...] Read more.
The rapid and ultrasensitive detection of Salmonella holds strategic significance for food safety surveillance and public health protection systems. This study innovatively developed a label-free biosensing platform based on the synergistic integration of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-Cas12a and the fluorescent deoxyribozyme Aurora for the efficient detection of foodborne Salmonella. The detection mechanism operates through a molecular cascade reaction: target-activated Cas12a protein specifically degrades Aurora deoxyribozyme via its trans-cleavage activity, thereby abolishing the enzyme’s catalytic capability to convert 4-methylumbelliferyl phosphate (4-MUP) into the highly fluorescent product 4-methylumbelliferone (4-MU). This cascade ultimately enables quantitative target analysis through fluorescence signal attenuation. Following systematic optimization of critical reaction parameters, the biosensing system demonstrated exceptional analytical performance: a detection limit of 1.29 CFU/mL with excellent linearity (R2 = 0.992) spanning six orders of magnitude (1.65 × 101–106 CFU/mL), along with high specificity against multiple interfering bacterial strains. Spike-and-recovery tests in complex food matrices (milk, chicken, and lettuce) yielded recoveries of 90.91–99.40% (RSD = 3.55–4.72%), confirming robust practical applicability. Notably, the platform design allows flexible detection of other pathogens through simple replacement of CRISPR guide sequences. Full article
(This article belongs to the Section Food Nutrition)
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