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Keywords = heat shock transcription factor (Hsf)

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16 pages, 11002 KiB  
Article
Transcriptomic Identification of Key Genes Responding to High Heat Stress in Moso Bamboo (Phyllostachys edulis)
by Qinchao Fu, Xinlan Wen, Man Tang, Xin Zhao and Fang Liu
Genes 2025, 16(8), 855; https://doi.org/10.3390/genes16080855 - 23 Jul 2025
Viewed by 276
Abstract
Background/Objectives: Moso bamboo (Phyllostachys edulis), the most widely distributed bamboo species in China, is valued for both its shoots and timber. This species often faces challenges from high-temperature stress. To cope with this stress, Moso bamboo has evolved various adaptive mechanisms [...] Read more.
Background/Objectives: Moso bamboo (Phyllostachys edulis), the most widely distributed bamboo species in China, is valued for both its shoots and timber. This species often faces challenges from high-temperature stress. To cope with this stress, Moso bamboo has evolved various adaptive mechanisms at the physiological and molecular levels. Although numerous studies have revealed that a large number of transcription factors (TFs) and genes play important roles in the regulatory network of plant heat stress responses, the regulatory network involved in heat responses remains incompletely understood. Methods: In this study, Moso bamboo was placed in a high-temperature environment of 42 °C for 1 h and 24 h, and transcriptome sequencing was carried out to accurately identify key molecules affected by high temperature and their related biological pathways. Results: Through a differential expression analysis, we successfully identified a series of key candidate genes and transcription factors involved in heat stress responses, including members of the ethylene response factor, HSF, WRKY, MYB, and bHLH families. Notably, in addition to traditional heat shock proteins/factors, multiple genes related to lipid metabolism, antioxidant enzymes, dehydration responses, and hormone signal transduction were found to play significant roles in heat stress responses. To further verify the changes in the expression of these genes, we used qRT-PCR technology for detection, and the results strongly supported their key roles in cellular physiological processes and heat stress responses. Conclusions: This study not only deepens our understanding of plant strategies for coping with and defending against extreme abiotic stresses but also provides valuable insights for future research on heat tolerance in Moso bamboo and other plants. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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14 pages, 3358 KiB  
Article
The Structural Deciphering of the α3 Helix Within ZmHsfA2’S DNA-Binding Domain for the Recognition of Heat Shock Elements in Maize
by Yantao Wang, Zhenyu Ma, Guoliang Li, Xiangzhao Meng, Shuonan Duan, Zihui Liu, Min Zhao, Xiulin Guo and Huaning Zhang
Plants 2025, 14(13), 1950; https://doi.org/10.3390/plants14131950 - 25 Jun 2025
Viewed by 364
Abstract
Heat shock transcription factor (Hsf) plays a pivotal role in regulating plant growth, development, and stress responses. Hsf activates or represses target gene transcription by binding to the heat shock element (HSE) of downstream genes. However, the specific interaction sites between Hsf and [...] Read more.
Heat shock transcription factor (Hsf) plays a pivotal role in regulating plant growth, development, and stress responses. Hsf activates or represses target gene transcription by binding to the heat shock element (HSE) of downstream genes. However, the specific interaction sites between Hsf and the HSE in the promoter remain unclear. In this study, the critical amino acid residues of ZmHsf17 and the paralogous ZmHsf05 involved in DNA binding were identified using molecular docking models, site-directed mutagenesis, and the electrophoretic mobility shift assay (EMSA). The results reveal that both ZmHsf17 and ZmHsf05 bind to the HSE of the ZmPAH1 promoter via a conserved arginine residue located in the α3 helix of their DNA-binding domains. Sequence substitution experiments among distinct HSEs demonstrated that flanking sequences upstream and downstream of the HSE core synergistically contribute to the specificity of DNA-binding domain recognition. Comparative evolutionary analysis of DNA-binding domain sequences from 25 phylogenetically diverse species reveals that the α3 helix constitutes the most conserved structural element. This study elucidates the key interaction sites between maize HsfA2 and its target genes, providing theoretical insights into the binding specificity to the HSEs of the plant’s Hsf family and the functional divergence. Additionally, these findings offer new targets for the precise engineering of Hsf proteins and synthetic HSEs. Full article
(This article belongs to the Special Issue Genomics of Biotic and Abiotic Stress Tolerance in Cereals)
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29 pages, 3779 KiB  
Article
Impact of Thermal Manipulation of Broiler Eggs on Growth Performance, Splenic Inflammatory Cytokine Levels, and Heat Shock Protein Responses to Post-Hatch Lipopolysaccharide (LPS) Challenge
by Mohammad Borhan Al-Zghoul, Seif Hundam, Mohammad Mayyas, David E. Gerrard and Rami A. Dalloul
Animals 2025, 15(12), 1736; https://doi.org/10.3390/ani15121736 - 12 Jun 2025
Viewed by 1668
Abstract
Thermal manipulation (TM) during embryogenesis is a promising non-pharmacological strategy to enhance physiological resilience in broiler chickens. This study evaluated the impact of thermal conditioning of fertile eggs on growth performance, inflammatory responses, and molecular stress markers following a post-hatch lipopolysaccharide (LPS) challenge. [...] Read more.
Thermal manipulation (TM) during embryogenesis is a promising non-pharmacological strategy to enhance physiological resilience in broiler chickens. This study evaluated the impact of thermal conditioning of fertile eggs on growth performance, inflammatory responses, and molecular stress markers following a post-hatch lipopolysaccharide (LPS) challenge. Fertilized eggs (average weight 62 ± 3 g) were obtained from 35-week-old Indian River broiler breeder hens. A total of 720 eggs were randomly assigned to either the control group (n = 360) or the TM group (n = 360), with each group consisting of two replicates of 180 eggs. Control eggs were maintained under standard incubation conditions (37.8 °C, 56% RH), while TM eggs were subjected to elevated temperature (38.8 °C, 65% RH) for 18 h daily from embryonic day 10 to 18. On post-hatch day 15, control and TM groups were administered either saline or LPS via intraperitoneal (IP) injection. Body weight and temperature, internal organ weights, and splenic mRNA expression levels of inflammatory cytokines, toll-like receptors, transcription factors, and heat shock proteins were assessed. TM did not alter hatchability (p = 0.633), but significantly shortened hatch time (p < 0.05) and improved feed efficiency (p < 0.05). While LPS induced marked inflammatory responses in all birds, those subjected to TM exhibited attenuated proinflammatory cytokine expression, enhanced anti-inflammatory signaling, and differential regulation of stress-associated genes, including nuclear factor kappa B (NF-κB), heat shock protein 70 (HSP70), and heat shock factors (HSFs). These findings suggest that TM during incubation promotes a more regulated immune response and improved stress adaptation post-hatch. This approach offers a potential antibiotic-free intervention to enhance broiler health, performance, and resilience under immunological stress. Full article
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17 pages, 8775 KiB  
Article
Genome-Wide Characterization of the Heat Shock Transcription Factor Gene Family in Begonia semperflorens Reveals Promising Candidates for Heat Tolerance
by Zhirou Liu, Nan Lin, Qirui Wang, Enkai Xu and Kaiming Zhang
Curr. Issues Mol. Biol. 2025, 47(6), 398; https://doi.org/10.3390/cimb47060398 - 27 May 2025
Viewed by 512
Abstract
Begonia semperflorens (B. semperflorens) is a popular ornamental plant widely used in landscapes such as plazas and flower beds, and it is also commonly grown as a potted plant indoors. It is known for its adaptability to high temperatures, drought, and [...] Read more.
Begonia semperflorens (B. semperflorens) is a popular ornamental plant widely used in landscapes such as plazas and flower beds, and it is also commonly grown as a potted plant indoors. It is known for its adaptability to high temperatures, drought, and shade. Under heat-tolerant conditions, heat shock transcription factors (HSFs) are key transcriptional regulatory proteins that play crucial roles in cellular processes. Despite extensive studies on the HSF family in various species, there has been no specific analysis targeting B. semperflorens. In this study, we identified 37 members of the BsHSF gene family in B. semperflorens based on its genome scaffold, which are unevenly distributed across the genome. Phylogenetic analysis reveals that these 37 members can be divided into three subfamilies. Analysis of their physicochemical properties shows significant diversity among these proteins. Except for the BsHSFB7 protein located in the cytoplasm, all other BsHSF proteins were found to be nuclear-localized. A comparison of the amino acid sequences indicates that all BsHSF proteins contain a conserved DNA-binding domain structure. Analysis of the promoter cis-acting elements also suggests that BsHSFs may be associated with heat stress and plant secondary metabolism. We further investigated the duplication events of BsHSF genes and their collinearity with genes from other Begonia species. Finally, through real-time quantitative PCR, we examined the expression patterns of the 37 BsHSFs in different plant tissues (roots, stems, leaves, and flowers) and their expression levels under heat stress treatment. The results show that, except for BsHSF29, all BsHSFs were expressed in various tissues, with varying expression levels across tissues. Except for BsHSF33 and BsHSF34, the expression levels of almost all BsHSF genes increased in response to heat treatment. In summary, these findings provide a better understanding of the role and regulatory mechanisms of HSFs in the heat stress response of B. semperflorens and lay the foundation for further exploration of the biological functions of BsHSFs in the stress responses of B. semperflorens. Full article
(This article belongs to the Special Issue Molecular Mechanisms in Plant Stress Tolerance)
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18 pages, 7688 KiB  
Article
The Function of Heat Shock Transcription Factors in Sex Differentiation in Cynoglossus semilaevis
by Zhijie Li, Xuexue Sun, Haipeng Yan, Lijun Wang, Xihong Li, Na Wang, Min Wei and Wenteng Xu
Animals 2025, 15(10), 1443; https://doi.org/10.3390/ani15101443 - 16 May 2025
Viewed by 356
Abstract
Chinese tongue sole (Cynoglossus semilaevis) is an important marine fish in China. It has sexual dimorphism. The weight and growth rate of female fish are much greater than those of male fish. However, high temperatures can induce sex reversal in genetic [...] Read more.
Chinese tongue sole (Cynoglossus semilaevis) is an important marine fish in China. It has sexual dimorphism. The weight and growth rate of female fish are much greater than those of male fish. However, high temperatures can induce sex reversal in genetic female fish (ZW) to phenotypic male fish; thus, identifying the genetic elements involved in temperature perception will provide the molecular basis for sex control. The heat shock transcription factor (hsf) is known as an important component of temperature sensing and mediates the heat shock response in fish such as Danio rerio; however, its function in C. semilaevis is unclear. In this study, five hsf genes (hsf1, hsf2, hsf4, hsf5a, and hsf5b) were identified in tongue sole and found to be expressed in the gonads at different developmental stages, peaking from 7M to 1Y. Gonadal in situ hybridization revealed that hsf gene signals were mainly localized in germ cells, e.g., sperm in the testis and all-stage oocytes in the ovary. Upon high-temperature stimulation, the expression of the hsf gene in the gonads increased gradually with increasing stimulation time, but different hsf genes presented different response patterns. After the RNA interference of hsf in the testis and ovarian cell lines, a series of sex-related genes, such as foxl2 and dmrt1, significantly changed. In vivo RNA interference had an effect on the female gonads and mainly affected neurl3 expression. On the basis of these data, we speculate that hsf responds to temperature stimulation and plays an important role in sex differentiation. This study helps elucidate the relationship between temperature sensing and sex differentiation in C. semilaevis. Full article
(This article belongs to the Special Issue Sex Determination and Differentiation in Aquatic Animals)
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17 pages, 5103 KiB  
Article
A Heat-Shock Transcription Factor in Panax ginseng, PgHSFA2, Confers Heat and Salt Resistance in Transgenic Tobacco
by Sung Won Jeon, Yi Rae Kim, Jung Yeon Han, Ukhan Jeong, Eun Ju Cheong and Yong Eui Choi
Int. J. Mol. Sci. 2025, 26(8), 3836; https://doi.org/10.3390/ijms26083836 - 18 Apr 2025
Viewed by 543
Abstract
Panax ginseng plants are susceptible to high temperatures and intense sunlight, necessitating cultivation under artificially shaded structures. Identifying the genes associated with heat resistance is critical for advancing molecular breeding strategies to develop heat-tolerant ginseng varieties. Heat-shock transcription factors (HSFs) are widely recognized [...] Read more.
Panax ginseng plants are susceptible to high temperatures and intense sunlight, necessitating cultivation under artificially shaded structures. Identifying the genes associated with heat resistance is critical for advancing molecular breeding strategies to develop heat-tolerant ginseng varieties. Heat-shock transcription factors (HSFs) are widely recognized as key regulators of plant responses to abiotic stresses, primarily by controlling heat-shock proteins (HSPs). To identify HSF genes in P. ginseng, transcriptome analysis was conducted on ginseng plants subjected to heat-shock treatment (1 h at 40 °C). Among the 26 HSF unigenes annotated from the ginseng transcriptome, a unigene related to the HSFA2 family exhibited the highest transcriptional activity following heat-shock treatment. The expression of PgHSFA2, a gene identified from this unigene, was analyzed under temperature and salt-stress conditions in ginseng plants using qPCR. The results showed that PgHSFA2 was highly responsive to various abiotic stresses, including heat, cold, salt, and intense sunlight. To assess the functional role of PgHSFA2, transgenic tobacco plants overexpressing this gene were analyzed. The overexpression of PgHSFA2 led to an elevated expression of heat-shock proteins (HSPs) in tobacco, resulting in enhanced resistance to high temperature and salt stress. Transgenic tobacco plants exhibited significantly less reduction in chlorophyll fluorescence compared to nontransgenic controls when exposed to salt stress (200 and 400 mM NaCl) and high-temperature stress (42 °C), indicating improved stress tolerance. In conclusion, PgHSFA2 is a crucial HSF that regulates the transcriptional control of HSPs in ginseng plants. The constitutive expression of PgHSFA2 in transgenic ginseng could potentially confer improved tolerance to high temperatures, making it a valuable target for molecular breeding. Full article
(This article belongs to the Section Molecular Plant Sciences)
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21 pages, 22976 KiB  
Article
Functional Analysis of CsHsf10 in Drought Stress Response in Camellia sinensis
by Yuqi Luo, Chenyu Shao, Rong Xu, Shuqi Qiu, Qiulong Hu, Jiayi Guo, Yun Peng, Han Tang, Yueling Zhao, Jianan Huang, Zhonghua Liu and Chengwen Shen
Horticulturae 2025, 11(4), 373; https://doi.org/10.3390/horticulturae11040373 - 31 Mar 2025
Viewed by 592
Abstract
Heat shock transcription factor (Hsf) plays a crucial role in the signal transduction pathways of plants in response to drought stress. However, studies exploring the specific functions and mechanisms of action of the Hsf family in tea plants (Camellia sinensis L.) remain [...] Read more.
Heat shock transcription factor (Hsf) plays a crucial role in the signal transduction pathways of plants in response to drought stress. However, studies exploring the specific functions and mechanisms of action of the Hsf family in tea plants (Camellia sinensis L.) remain limited. In this study, we identified 31 members of the CsHsf family from the C. sinensis genome. CsHsf10 was determined to be a potential drought-resistant candidate gene by screening 10 highly expressed genes in mature leaves and confirming results through RT-qPCR. Correlation analysis indicates that CsHsf10 may enhance the drought resistance of tea plants by participating in the tea polyphenol synthesis pathway and regulating the expression of antioxidant enzyme genes. Furthermore, overexpression experiments in Arabidopsis and antisense oligonucleotide experiments in tea plants corroborated that CsHsf10 exerts a significant positive regulatory effect on drought resistance in tea plants. Yeast one-hybrid assays and dual luciferase reporter gene experiments demonstrated that CsHsf10 can directly target CsPOD17, significantly promoting its transcriptional expression. Additionally, we found that the expression of CsHsf10 contributes to the increased accumulation of catechin components in tea plants under drought stress. These findings suggest that, during the response of tea plants to drought stress, CsHsf10 not only enhances antioxidant capacity by regulating the activity of antioxidant enzymes but also optimizes the physiological state of tea plants by influencing the accumulation of secondary metabolites, thereby significantly improving their drought resistance. Full article
(This article belongs to the Special Issue Tea Tree: Cultivation, Breeding and Their Processing Innovation)
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17 pages, 4898 KiB  
Article
Genome-Wide Identification and Expression Analysis of Heat Shock Transcription Factors in Camellia sinensis Under Abiotic Stress
by Guimin Li, Xinying Shi, Qinmin Lin, Mengmeng Lv, Jing Chen, Yingxin Wen, Zhiyi Feng, Syed Muhammad Azam, Yan Cheng, Shucai Wang and Shijiang Cao
Plants 2025, 14(5), 697; https://doi.org/10.3390/plants14050697 - 24 Feb 2025
Cited by 2 | Viewed by 716
Abstract
The tea plant (Camellia sinensis) is an economically important crop that plays an important role not only in the beverage industry but also in the pharmaceutical industry. The environment has a great influence on the quality of the tea plant. Heat [...] Read more.
The tea plant (Camellia sinensis) is an economically important crop that plays an important role not only in the beverage industry but also in the pharmaceutical industry. The environment has a great influence on the quality of the tea plant. Heat shock factors (Hsfs) are transcriptional regulators that control the plant response to adversity. However, only a limited number of studies have reported the Hsf gene in Camellia sinensis, and most of these reports involve high-temperature, drought, and salt stress. Research on light, dark, and cold stress is limited. In this study, 22 CsHsf genes were obtained by whole genome sequencing and found to be located on 11 chromosomes. In addition, the gene structure, protein motif, and phylogeny were studied. We classified the genes into three major subfamilies: CsHsfA, CsHsfB, and CsHsfC. Interestingly, we found that there was more alignment between CsHsf and Hsf genes in dicotyledons, including Arabidopsis thaliana and Solanum lycopersicum, than in the monocotyledon Oryza sativa. The expression of many CsHsf genes was affected by low-temperature, light, and dark abiotic stresses. Notably, CsHsf15 and CsHsf16 showed high induction rates under both light and cold stress, and both genes carried cis-acting elements associated with light and low-temperature responses. These results lay a solid groundwork for further investigations into the involvement of CsHsf genes in the response of Camellia sinensis to abiotic stresses. Full article
(This article belongs to the Special Issue Responses of Crops to Abiotic Stress)
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16 pages, 3675 KiB  
Article
Targeting Heat Shock Transcription Factor 4 Enhances the Efficacy of Cabozantinib and Immune Checkpoint Inhibitors in Renal Cell Carcinoma
by Saeki Saito, Hirofumi Yoshino, Seiya Yokoyama, Mitsuhiko Tominaga, Gang Li, Junya Arima, Ichiro Kawahara, Ikumi Fukuda, Akihiko Mitsuke, Takashi Sakaguchi, Satoru Inoguchi, Ryosuke Matsushita, Yasutoshi Yamada, Shuichi Tatarano, Akihide Tanimoto and Hideki Enokida
Int. J. Mol. Sci. 2025, 26(4), 1776; https://doi.org/10.3390/ijms26041776 - 19 Feb 2025
Viewed by 1123
Abstract
Recently, immune checkpoint inhibitors (ICIs) and cabozantinib, a tyrosine kinase inhibitor (TKI), have been used to treat renal cell carcinoma (RCC); the combination of these agents has become a standard treatment for RCC. TKIs generally target vascular endothelial growth factor. However, cabozantinib is [...] Read more.
Recently, immune checkpoint inhibitors (ICIs) and cabozantinib, a tyrosine kinase inhibitor (TKI), have been used to treat renal cell carcinoma (RCC); the combination of these agents has become a standard treatment for RCC. TKIs generally target vascular endothelial growth factor. However, cabozantinib is characterized by its targeting of MET. Therefore, cabozantinib can be used as a late-line therapy for TKI-resistant RCC. According to data from The Cancer Genome Atlas (TCGA), heat shock transcription factor 4 (HSF4) expression is higher in RCC tissues than in normal renal tissues. HSF4 binds to the MET promoter in colorectal carcinoma to enhance MET expression and promote tumor progression. However, the functional role of HSF4 in RCC is unclear. We performed loss-of-function assays of HSF4, and our results showed that HSF4 knockdown in RCC cells significantly decreased cell functions. Moreover, MET expression was decreased in HSF4-knockdown cells but elevated in sunitinib-resistant RCC cells. The combination of cabozantinib and HSF4 knockdown reduced cell proliferation in sunitinib-resistant cells more than each monotherapy alone. Furthermore, HSF4 knockdown combined with an ICI showed synergistic suppression of tumor growth in vivo. Overall, our strategy involving HSF4 knockdown may enhance the efficacy of existing therapies, such as cabozantinib and ICIs. Full article
(This article belongs to the Special Issue Novel Combination Therapies for the Solid Cancers Treatment)
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23 pages, 5624 KiB  
Article
Heat Shock Factors in the European Eel: Gene Characterization and Expression Response to Different Environmental Conditions and to Induced Sexual Maturation
by Leonor Ferrão, Luz Pérez, Juan F. Asturiano and Marina Morini
Fishes 2025, 10(2), 73; https://doi.org/10.3390/fishes10020073 - 12 Feb 2025
Viewed by 786
Abstract
Heat shock factors (HSFs) are transcription factors that regulate responses to environmental changes and play roles in physiological mechanisms like spermatogenesis. This study analyzed the HSF gene family and their expression profiles in the European eel under different environmental conditions and during testis [...] Read more.
Heat shock factors (HSFs) are transcription factors that regulate responses to environmental changes and play roles in physiological mechanisms like spermatogenesis. This study analyzed the HSF gene family and their expression profiles in the European eel under different environmental conditions and during testis maturation. Six HSF genes were identified in the studied vertebrates, in which the eel presents two HSF1 paralogs (HSF1a and HSF1b), likely resulting from the teleost whole-genome duplication event, while only one paralog is present for the other HSF (HSF2, HSF4, and HSF5). All five HSF genes were highly expressed in the testis, but some were also detected in the brain, intestine, and gills. Our findings showed that HSF1 changed their expression in response to different temperature and salinity conditions, suggesting that these may support males in perceiving the temperature and salinity changes possibly found during reproductive migration. During hCGrec-induced spermatogenesis, HSF genes presented a decreasing expression profile throughout testis maturation (with significant differences in HSF1a and HSF4), except HSF5, which showed the highest levels after 4 weeks of hormonal treatment. Our study indicates that HSF genes are potentially implicated in the response to environmental changes perception and during gonadal maturation. Full article
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12 pages, 2423 KiB  
Article
Sly-miR398 Participates in Heat Stress Tolerance in Tomato by Modulating ROS Accumulation and HSP Response
by Baoyu Li, Peiwen Wang, Shuaijing Zhao, Jiaqi Dong, Shengming Mao, Xuyongjie Zhu, Tiantian Yuan, Haiying Qiu, Long Cao, Yunmin Xu, Yong He, Zhujun Zhu and Guochao Yan
Agronomy 2025, 15(2), 294; https://doi.org/10.3390/agronomy15020294 - 24 Jan 2025
Viewed by 996
Abstract
Heat stress is one of the most important environmental problems in agriculture, which severely restricts the growth and yield of plants. In plants, microRNA398 (miR398) negatively regulates the activity of superoxide dismutase (SOD) by modulating the expression of its coding genes (CSD [...] Read more.
Heat stress is one of the most important environmental problems in agriculture, which severely restricts the growth and yield of plants. In plants, microRNA398 (miR398) negatively regulates the activity of superoxide dismutase (SOD) by modulating the expression of its coding genes (CSDs) post-transcriptionally, thereby regulating reactive oxygen species (ROS) homeostasis and stress resistance. In this study, the role of miR398 in heat stress tolerance in tomato was investigated. Under heat stress, the expression of miR398 was upregulated in tomato, while the expression of its target genes (CSD1 and CSD2) and SOD activity was downregulated. Furthermore, by comparing the heat stress response in wild type (WT) and a transgenic line overexpressing MIR398 (miR398-OE), the results showed that overexpression of miR398 promoted tomato growth and the expression of genes encoding heat shock factor (HSF, transcription factor) and heat shock protein (HSP) under heat stress. Meanwhile, downregulated activity of antioxidant enzymes, including SOD, catalase (CAT), peroxidase (POD), and ascorbate peroxidase (APX), and enhanced ROS accumulation was observed in miR398-OE compared with that in WT under heat stress. Further study using dimethylthiourea (DMTU, a ROS scavenger) indicated that the enhanced plant growth and expression of HSFs/HSPs was based on the promoted accumulation of ROS in miR398-OE. Overall, the results of this study revealed that the upregulated expression of miR398 in response to heat stress would modulate the antioxidant system and enhance ROS accumulation, thereby enhancing the expression of HSFs and HSPs and heat stress tolerance in tomato. Full article
(This article belongs to the Section Horticultural and Floricultural Crops)
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22 pages, 1773 KiB  
Review
Rice Responses to Abiotic Stress: Key Proteins and Molecular Mechanisms
by Xiaohui Wang, Xuelei Liu, Yonglin Su and Huaizong Shen
Int. J. Mol. Sci. 2025, 26(3), 896; https://doi.org/10.3390/ijms26030896 - 22 Jan 2025
Cited by 2 | Viewed by 2299
Abstract
The intensification of global climate change and industrialization has exacerbated abiotic stresses on crops, particularly rice, posing significant threats to food security and human health. The mechanisms by which rice responds to these stresses are complex and interrelated. This review aims to provide [...] Read more.
The intensification of global climate change and industrialization has exacerbated abiotic stresses on crops, particularly rice, posing significant threats to food security and human health. The mechanisms by which rice responds to these stresses are complex and interrelated. This review aims to provide a comprehensive understanding of the molecular mechanisms underlying rice’s response to various abiotic stresses, including drought, salinity, extreme temperatures, and heavy metal pollution. We emphasize the molecular mechanisms and structural roles of key proteins involved in these stress responses, such as the roles of SLAC1 and QUAC1 in stomatal regulation, HKT and SOS proteins in salinity stress, heat shock proteins (HSPs) and heat stress transcription factors (HSFs) in temperature stress, and Nramp and ZIP transport proteins in response to heavy metal stress. This review elucidates the complex response networks of rice to various abiotic stresses, highlighting the key proteins and their related molecular mechanisms, which may further help to improve the strategies of molecular breeding. Full article
(This article belongs to the Special Issue Molecular Mechanisms of Abiotic Stress Response in Rice)
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20 pages, 14036 KiB  
Article
RiboTag RNA Sequencing Identifies Local Translation of HSP70 in Astrocyte Endfeet After Cerebral Ischemia
by Bosung Shim, Prajwal Ciryam, Cigdem Tosun, Riccardo Serra, Natalya Tsymbalyuk, Kaspar Keledjian, Volodymyr Gerzanich and J. Marc Simard
Int. J. Mol. Sci. 2025, 26(1), 309; https://doi.org/10.3390/ijms26010309 - 1 Jan 2025
Viewed by 1846
Abstract
Brain ischemia causes disruption in cerebral blood flow and blood–brain barrier integrity, which are normally maintained by astrocyte endfeet. Emerging evidence points to dysregulation of the astrocyte translatome during ischemia, but its effects on the endfoot translatome are unknown. In this study, we [...] Read more.
Brain ischemia causes disruption in cerebral blood flow and blood–brain barrier integrity, which are normally maintained by astrocyte endfeet. Emerging evidence points to dysregulation of the astrocyte translatome during ischemia, but its effects on the endfoot translatome are unknown. In this study, we aimed to investigate the early effects of ischemia on the astrocyte endfoot translatome in a rodent cerebral ischemia and reperfusion model of stroke. To do so, we immunoprecipitated astrocyte-specific tagged ribosomes (RiboTag IP) from mechanically isolated brain microvessels. In mice subjected to middle cerebral artery occlusion and reperfusion and contralateral controls, we sequenced ribosome-bound RNAs from perivascular astrocyte endfeet and identified 205 genes that were differentially expressed in the endfoot translatome after ischemia. The main biological processes associated with these differentially expressed genes included proteostasis, inflammation, cell cycle/death, and metabolism. Transcription factors whose targets were enriched amongst upregulated translating genes included HSF1, the master regulator of the heat shock response. The most highly upregulated genes in the translatome were HSF1-dependent Hspa1a and Hspa1b, which encode the inducible HSP70. Using qPCR, Western blot, and immunohistochemistry, we confirmed that HSP70 is upregulated in astrocyte endfeet after ischemia. This coincided with an increase in ubiquitination across the proteome that suggests that ischemia induces a disruption in proteostasis in astrocyte endfeet. These findings suggest a robust proteostasis response to proteotoxic stress in the endfoot translatome after ischemia. Modulating proteostasis in endfeet may be a strategy to preserve endfoot function and BBB integrity after ischemic stroke. Full article
(This article belongs to the Special Issue New Trends in Research on Cerebral Ischemia)
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20 pages, 5795 KiB  
Article
Genome-Wide Analysis of the Hsf Gene Family in Rosa chinensis and RcHsf17 Function in Thermotolerance
by Yanhui Kang, Pei Sun, Yuan Yang, Maofu Li, Hua Wang, Xiangyi Sun and Wanmei Jin
Int. J. Mol. Sci. 2025, 26(1), 287; https://doi.org/10.3390/ijms26010287 - 31 Dec 2024
Cited by 4 | Viewed by 932
Abstract
Heat shock transcription factors (Hsfs) play an important role in response to high temperatures by binding to the promoter of the heat shock protein gene to promote its expression. As an important ornamental plant, the rose often encounters heat stress during the flowering [...] Read more.
Heat shock transcription factors (Hsfs) play an important role in response to high temperatures by binding to the promoter of the heat shock protein gene to promote its expression. As an important ornamental plant, the rose often encounters heat stress during the flowering process. However, there are few studies on the Hsf family in roses (Rosa. chinensis). In the current study, 19 Hsf genes were identified from R. chinensis and grouped into three main subfamilies (A, B, and C) according to their structural characteristics and phylogenetic analysis. The expression patterns of RcHsf genes were detected in different tissues by quantitative real-time PCR. The RcHsf genes exhibited distinct expression patterns at high temperatures, with RcHsf17 having the highest expression level. RcHsf17 was localized in the nucleus and had transcriptional activity. The overexpression of RcHsf17 increased thermotolerance in Arabidopsis, suggesting the potential role of RcHsf17 in the regulation of the high-temperature response. In addition, RcHsf17 overexpressed in Arabidopsis could enhance the response of transgenic Arabidopsis to methyl jasmonate. Collectively, this study identified and screened RcHsfs in response to high temperatures in roses, providing new insights into the functional divergence of RcHsfs and a basis for screening new varieties of rose. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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35 pages, 8312 KiB  
Article
Comparison of the Effects of UV-C Light in the Form of Flash or Continuous Exposure: A Transcriptomic Analysis on Arabidopsis thaliana L.
by Seyed Mehdi Jazayeri, Jawad Aarrouf, Laurent Urban and Félicie Lopez-Lauri
Int. J. Mol. Sci. 2024, 25(24), 13718; https://doi.org/10.3390/ijms252413718 - 22 Dec 2024
Cited by 2 | Viewed by 2003
Abstract
Ultraviolet C (UV-C) flash treatment represents a promising method for priming plants. This study compared the effects of 1 s (flash) and 60 s (60 s) UV-C exposures on the transcriptome of Arabidopsis thaliana L. plants. A dose of 200 J m−2 [...] Read more.
Ultraviolet C (UV-C) flash treatment represents a promising method for priming plants. This study compared the effects of 1 s (flash) and 60 s (60 s) UV-C exposures on the transcriptome of Arabidopsis thaliana L. plants. A dose of 200 J m−2 delivered in one second was observed to effectively stimulate plant defenses without causing any adverse effects on plant health. A total of 3054 and 1865 differentially expressed genes (DEGs) were identified in the flash and 60 s treatments, respectively, in comparison to the control plants. Of these, 1131 were common to both treatments. The flash treatment affected a greater number of transcription factors (415 genes) than the 60 s treatment (254 genes), indicating more pronounced alterations in gene expression. The flash treatment resulted in a significant overexpression of heat shock proteins (HSPs), heat shock factors (HSFs), and their associated genes, which impacted oxidative stress, proteostasis, genome stability, cell survival, and thermotolerance. The majority of mitochondrial genes were found to be upregulated, while photosynthetic genes exhibited a downregulation. These expression patterns coordinate electron transport and crosstalk between the nucleus, chloroplasts, and mitochondria, eliciting an adaptive protective response to UV-C flash. Additionally, the flash treatment resulted in alterations to several genes involved in cell cycle regulation, division, and DNA replication. These included ATP BMMs, BRCA2 s, IQDs, kinesin complex, MCM complex, CYCs, and CDKs, which ultimately led to cell cycle arrest as a temporary preparation for subsequent conditions. The present study demonstrates that a 1 s exposure to UV-C induces distinctive plant responses through coordinated gene expression. The findings suggest that the flash treatment is an innovative method that triggers a unique cellular response, prioritizing repair mechanisms and potentially enhancing plant immunity, resilience, and priming. It can be used as a plant resistance inducer and stimulator. Full article
(This article belongs to the Section Molecular Plant Sciences)
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