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30 pages, 3796 KiB  
Article
Applying Deep Learning Methods for a Large-Scale Riparian Vegetation Classification from High-Resolution Multimodal Aerial Remote Sensing Data
by Marcel Reinhardt, Edvinas Rommel, Maike Heuner and Björn Baschek
Remote Sens. 2025, 17(14), 2373; https://doi.org/10.3390/rs17142373 - 10 Jul 2025
Viewed by 301
Abstract
The unique vegetation in riparian zones is fundamental for various ecological and socio-economic functions in these transitional areas. Sustainable management requires detailed spatial information about the occurring flora. Here, we present a Deep Learning (DL)-based approach for processing multimodal high-resolution remote sensing data [...] Read more.
The unique vegetation in riparian zones is fundamental for various ecological and socio-economic functions in these transitional areas. Sustainable management requires detailed spatial information about the occurring flora. Here, we present a Deep Learning (DL)-based approach for processing multimodal high-resolution remote sensing data (aerial RGB and near-infrared (NIR) images and elevation maps) to generate a classification map of the tidal Elbe and a section of the Rhine River (Germany). The ground truth was based on existing mappings of vegetation and biotope types. The results showed that (I) despite a large class imbalance, for the tidal Elbe, a high mean Intersection over Union (IoU) of about 78% was reached. (II) At the Rhine River, a lower mean IoU was reached due to the limited amount of training data and labelling errors. Applying transfer learning methods and labelling error correction increased the mean IoU to about 60%. (III) Early fusion of the modalities was beneficial. (IV) The performance benefits from using elevation maps and the NIR channel in addition to RGB images. (V) Model uncertainty was successfully calibrated by using temperature scaling. The generalization ability of the trained model can be improved by adding more data from future aerial surveys. Full article
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23 pages, 1432 KiB  
Review
Immobilization Technology of Aerobic Denitrifying Bacteria and Its Enhanced Biological Denitrification: A Review of Recent Advances
by Jing Li, Jie Li, Hao Mu, Huina Xie and Wei Zhao
Water 2025, 17(10), 1433; https://doi.org/10.3390/w17101433 - 9 May 2025
Viewed by 1162
Abstract
Aerobic denitrifying microorganisms, with their strong environmental adaptability, low dissolved oxygen concentration requirements, rapid growth rate, and high nitrogen removal efficiency, significantly compensate for the shortcomings of traditional aerobic chemolithoautotrophic nitrification and anaerobic heterotrophic denitrification models. The introduction of aerobic denitrifiers can effectively [...] Read more.
Aerobic denitrifying microorganisms, with their strong environmental adaptability, low dissolved oxygen concentration requirements, rapid growth rate, and high nitrogen removal efficiency, significantly compensate for the shortcomings of traditional aerobic chemolithoautotrophic nitrification and anaerobic heterotrophic denitrification models. The introduction of aerobic denitrifiers can effectively enhance the removal of nitrate nitrogen. However, directly inoculating aerobic denitrifiers into wastewater leads to issues such as easy loss of bacterial cells and difficulty in forming a dominant flora, thus preventing the long-term maintenance of their enhancing effect on denitrification performance. To address this problem, microbial immobilization technology has been introduced into the remediation process of nitrogen-polluted water bodies. This technology can maintain a high biomass concentration, provide a stable breeding ground for microorganisms, and effectively prevent the rapid loss of microorganisms. This article systematically reviews the current status of the isolation of aerobic denitrifying bacteria, key enzymes, and genes, as well as the application progress of aerobic denitrifying bacteria and their immobilization technology, aiming to provide solid theoretical support for the practical application of aerobic denitrification technology and promote its further development in the field of nitrogen pollution control. Full article
(This article belongs to the Section Wastewater Treatment and Reuse)
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22 pages, 4145 KiB  
Article
Time Series Analysis of Vegetation Recovery After the Taum Sauk Dam Failure
by Abree A. Peterson, Karen E. DeMatteo, Roger J. Michaelides, Stanton Braude and Alan R. Templeton
Remote Sens. 2025, 17(9), 1605; https://doi.org/10.3390/rs17091605 - 30 Apr 2025
Viewed by 467
Abstract
On 14 December 2005, there was a catastrophic flood after a failure in the upper reservoir at the Taum Sauk Plant in southern Missouri. While there has been extensive research on the cause of the dam’s failure and the flood’s immediate impact, there [...] Read more.
On 14 December 2005, there was a catastrophic flood after a failure in the upper reservoir at the Taum Sauk Plant in southern Missouri. While there has been extensive research on the cause of the dam’s failure and the flood’s immediate impact, there has been limited investigation on how vegetation in and around the resulting flood scour has changed since this event. This study fills this gap through a time-series analysis using imagery sourced from GloVis and Planet Explorer to quantify vegetation levels prior to the flood (2005) through to 2024. Vegetation level was calculated using the Normalized Difference Vegetation Index (NDVI), which measures the level of greenness via light reflected by vegetation. Vegetation levels inside of the scour were compared to two 120 m buffer areas surrounding the scour, immediately adjacent (0–120 m) and at 120–240 m from the scour’s edge. Within the scour, NDVI analysis showed a dramatic loss of vegetation immediately after the flood, followed by varying levels for several years, before a steady increase in the proportion of areas with vegetation starting in 2014. The buffer area adjacent to the edge of the scour showed a similar pattern, but at lower magnitudes of change, which likely reflects the ragged edge created by the flood. The buffer area farther from the edge showed a consistent pattern of high vegetation, which likely reflects the broader landscape. While ground truthing confirmed these patterns between 2006 and 2011, in 2012, the ground truthing revealed much recovery in small local areas within the scour that were not apparent though NDVI analysis. These local areas of recovery were reflected in the pattern of recolonization of the scour from nearby glades (i.e., natural habitats of exposed bedrock) by glade flora and by the eastern collared lizard (Crotaphytus collaris collaris), an apex predator adapted to living in rocky, open areas and a bioindicator of vegetation recovery. While recovery of vegetation occurred steadily after 2012, ground truthing indicated that the original oak/hickory forest was now a minor component of this recovery, and that glade species dominated the former forested area. Full article
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24 pages, 5507 KiB  
Article
Assessment of Habitat Suitability for Oedaleus decorus asiaticus Using MaxEnt and Frequency Ratio Model in Xilingol League, China
by Raza Ahmed, Wenjiang Huang, Yingying Dong, Jing Guo, Zeenat Dildar, Zahid Ur Rahman, Yan Zhang, Xianwei Zhang, Bobo Du and Fangzheng Yue
Remote Sens. 2025, 17(5), 846; https://doi.org/10.3390/rs17050846 - 27 Feb 2025
Cited by 1 | Viewed by 766
Abstract
Grasshoppers can significantly disrupt agricultural and livestock management because they reproduce and develop quickly in friendly environments. Xilingol League is the region most severely affected by grasshopper infestations. The region’s extensive grasslands are considered valuable, a critical component of the local ecosystem, a [...] Read more.
Grasshoppers can significantly disrupt agricultural and livestock management because they reproduce and develop quickly in friendly environments. Xilingol League is the region most severely affected by grasshopper infestations. The region’s extensive grasslands are considered valuable, a critical component of the local ecosystem, a vital resource for the region’s key economic activity of livestock farming, and crucial for supporting diverse flora and fauna, carbon sequestration, and climate regulation. Oedaleus decorus asiaticus (O. d. asiaticus) is highly harmful in Xilingol League in the Inner Mongolia Autonomous Region of China. Therefore, early warning is crucial for projecting O. d. asiaticus’s regional spread and detecting the impacts of critical environmental elements. We systematically identified 26 major contributing elements by examining four categories of environmental factors—meteorology, vegetation, soil, and topography—encompassing the three growth phases of grasshoppers. Furthermore, the MaxEnt and frequency ratio (FR) approaches, coupled with multisource remote sensing data, were used to predict a potentially appropriate distribution (habitat suitability) of O. d. asiaticus in Xilingol League. The research found nine key habitat factors influencing O. d. asiaticus distribution: the mean specific humidity during the adult stage (ASH), vegetation type (VT), above-ground biomass during the nymph stage (NAB), soil sand content (SSAND), mean precipitation during the egg stage (EP), mean precipitation during the nymph stage (NP), soil bulk density (SBD), elevation, and soil type (ST). Additionally, our analysis revealed that the most suitable and moderately suitable habitats for O. d. asiaticus are predominantly located in the southern and eastern parts of Xilingol League, with significant concentrations in West Ujumqin, East Ujumqin, Xilinhot, Zhenglan, Zheng Xiangbai, Duolun, and Taipusi. Based on the suitable habitat results, policymakers may make judgments about future management actions to preserve the ecological security of grasslands and their sustainable growth. This study indicates that the Maxent approach exhibited superior accuracy (receiver operating characteristic) compared to the FR approach for assessing the habitat suitability for O. d. asiaticus in Xilingol League. Full article
(This article belongs to the Special Issue Advancements in Remote Sensing for Sustainable Agriculture)
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21 pages, 45648 KiB  
Article
A Big Data Approach for the Regional-Scale Spatial Pattern Analysis of Amazonian Palm Locations
by Matthew J. Drouillard and Anthony R. Cummings
Remote Sens. 2025, 17(5), 784; https://doi.org/10.3390/rs17050784 - 24 Feb 2025
Viewed by 562
Abstract
Arecaceae (palms) are an important resource for indigenous communities as well as fauna populations across Amazonia. Understanding the spatial patterns and the environmental factors that determine the habitats of palms is of considerable interest to rainforest ecologists. Here, we utilize remotely sensed imagery [...] Read more.
Arecaceae (palms) are an important resource for indigenous communities as well as fauna populations across Amazonia. Understanding the spatial patterns and the environmental factors that determine the habitats of palms is of considerable interest to rainforest ecologists. Here, we utilize remotely sensed imagery in conjunction with topography and soil attribute data and employ a generalized cluster identification algorithm, Hierarchical Density-Based Spatial Clustering of Applications with Noise (HDBSCAN), to study the underlying patterns of palms in two areas of Guyana, South America. The results of the HDBSCAN assessment were cross-validated with several point pattern analysis methods commonly used by ecologists (the quadrat test for complete spatial randomness, Morista Index, Ripley’s L-function, and the pair correlation function). A spatial logistic regression model was generated to understand the multivariate environmental influences driving the placement of cluster and outlier palms. Our results showed that palms are strongly clustered in the areas of interest and that the HDBSCAN’s clustering output correlates well with traditional analytical methods. The environmental factors influencing palm clusters or outliers, as determined by logistic regression, exhibit qualitative similarities to those identified in conventional ground-based palm surveys. These findings are promising for prospective research aiming to integrate remote flora identification techniques with traditional data collection studies. Full article
(This article belongs to the Special Issue Advancements in Environmental Remote Sensing and GIS)
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14 pages, 3608 KiB  
Article
Diversity Patterns of Bacteria in the Root Zone of Davidia involucrata Along an Altitudinal Gradient
by Yang Jin, Xin Li, Yu Hu, Junzhong Huang, Yan Chen, Yongping Kou, Xinlei Li, Ming Dong, Dongzhou Deng and Yan Li
Forests 2024, 15(11), 1920; https://doi.org/10.3390/f15111920 - 31 Oct 2024
Cited by 1 | Viewed by 1106
Abstract
Davidia involucrata has an ancient origin, representing a remnant from the paleotropical flora that thrived during the Tertiary period. Altitudinal gradient acts as a natural testing ground for studying climate change, and research on the distribution patterns of microorganisms along altitudinal gradients is [...] Read more.
Davidia involucrata has an ancient origin, representing a remnant from the paleotropical flora that thrived during the Tertiary period. Altitudinal gradient acts as a natural testing ground for studying climate change, and research on the distribution patterns of microorganisms along altitudinal gradients is crucial in understanding the adaptability of D. involucrata to climate change. In our study, we examined sample sites ranging from 1600 to 2200 m in elevation, which are part of the primary habitat zone for Davidia involucrata within the Xuebaoding National Nature Reserve. In 2021, field surveys were conducted across four altitudinal gradients (1600 m, 1800 m, 2000 m and 2200 m) of the D. involucrata distribution in the nature reserve. The sampling plots were set in each altitudinal gradient, and three representative and healthy mature trees were selected as sample trees for each plot. Rhizosphere soils were used to test the soil stoichiometry characteristics and root zone microbial communities. Our findings indicated pronounced differences in soil total carbon (TC) and total phosphorus (TP) content and C:P and N:P ratios between the four altitude sites (p < 0.05). Analysis of the bacterial communities revealed higher richness (PD and Chao1 indexes) at ASL2000 and ASL2200 (high altitude) compared to ASL1600 and ASL2000 (low altitude) (p < 0.05). Non-metric multidimensional scaling analysis demonstrated a distinct clustering of bacterial communities between the high and low altitudes (p < 0.01). At the phylum level, Proteobacteria and Acidobacteria were predominant at high altitudes, while Actinobacteria and Chloroflexi dominated at low altitudes. The core microbiome, shared among all altitudes, comprised 377 genes. The analysis of differential abundance revealed notable disparities in the prevalence of certain bacterial genera with altitude, with Arthrobacter and Acidothermus experiencing the most pronounced shifts (p < 0.05). This confirmed that environmental factors significantly influenced bacterial community structure and abundance. Spearman’s rank correlations revealed that both Chao1 and PD indices were positively correlated with elevation, TC, and TN, with Chao1 showing stronger relationships. Both indices were negatively correlated with MAT, while only Chao1 exhibited a significant negative correlation with pH. Linear regression analysis further confirmed the significant associations between Chao1 index and elevation, TN, MAT, and pH. Furthermore, redundancy analysis demonstrated that altitude (ASL) and TN were the primary factors shaping soil bacterial community composition, explaining 21.32% and 30.70% of the variance, respectively. Altitude significantly influenced microbial community structure (p = 0.003). Distinct microbial taxa showed specific associations with environmental gradients, suggesting niche specialization in response to soil conditions. These findings suggest that altitude influences soil nutrient characteristics and microbial community composition in the D. involucrata habitat, offering insights into the ecological factors affecting this endangered species. Full article
(This article belongs to the Special Issue Forest Plant, Soil, Microorganisms and Their Interactions)
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25 pages, 1781 KiB  
Article
Firebreaks and Their Effect on Vegetation Composition and Diversity in Grasslands of Golden Gate Highlands National Park, South Africa
by Andri C. van Aardt, J. C. Linde de Jager and Johan J. van Tol
Diversity 2024, 16(7), 373; https://doi.org/10.3390/d16070373 - 27 Jun 2024
Viewed by 2008
Abstract
Southern African grasslands with a rich flora, shaped by fire, grazing, climate and geology, as well as playing a role in carbon sequestration, are becoming more important in conservation. Fire is often used as a management tool to improve vegetation and to protect [...] Read more.
Southern African grasslands with a rich flora, shaped by fire, grazing, climate and geology, as well as playing a role in carbon sequestration, are becoming more important in conservation. Fire is often used as a management tool to improve vegetation and to protect property against uncontrolled fire. We therefore attempt to determine the effect consecutive burning has on vegetation. Paired plots along firebreaks were used to collect vegetation data using the Braun-Blanquet cover abundance scale. Soil samples were also collected to determine the impact of fire on below-ground nitrogen (N) and carbon (C) stocks and ratios. The results indicate that there is no difference between the plant communities of the firebreaks and the adjacent grassland; however, there are certain species that are favoured by firebreaks and others by the adjacent grassland. There is also no difference in diversity between the firebreaks and adjacent grassland areas. Carbon and nitrogen stocks as well as C:N ratios did not differ significantly between the firebreaks and the adjacent grassland plots although trends indicate a decline in both C and N with repeated burning. Full article
(This article belongs to the Special Issue Biodiversity and Ecology of African Vegetation)
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20 pages, 17559 KiB  
Article
Assessing Ecological Impacts and Recovery in Coal Mining Areas: A Remote Sensing and Field Data Analysis in Northwest China
by Deyun Song, Zhenqi Hu, Yi Yu, Fan Zhang and Huang Sun
Remote Sens. 2024, 16(12), 2236; https://doi.org/10.3390/rs16122236 - 19 Jun 2024
Cited by 3 | Viewed by 2588
Abstract
In the coal-rich provinces of Shanxi, Shaanxi, and Inner Mongolia, the landscape bears the scars of coal extraction—namely subsidence and deformation—that disrupt both the terrain and the delicate ecological balance. This research delves into the transformative journey these mining regions undergo, from pre-mining [...] Read more.
In the coal-rich provinces of Shanxi, Shaanxi, and Inner Mongolia, the landscape bears the scars of coal extraction—namely subsidence and deformation—that disrupt both the terrain and the delicate ecological balance. This research delves into the transformative journey these mining regions undergo, from pre-mining equilibrium, through the tumultuous phase of extraction, to the eventual restoration of stability post-reclamation. By harnessing a suite of analytical tools, including sophisticated remote sensing, UAV aerial surveys, and the meticulous ground-level sampling of flora and soil, the study meticulously measures the environmental toll of mining activities and charts the path to ecological restoration. The results are promising, indicating that the restoration initiatives are effectively healing the landscapes, with proactive interventions such as seeding, afforestation, and land rehabilitation proving vital in the swift ecological turnaround. Remote sensing technology, in particular, emerges as a robust ally in tracking ecological shifts, supporting sustainable practices and guiding ecological management strategies. This study offers a promising framework for assessing geological environmental shifts, which may guide policymakers in shaping the future of mining rehabilitation in arid and semi-arid regions. Full article
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15 pages, 9110 KiB  
Article
Witness of the Little Ice Age—One of the Oldest Spruces in Poland (Śnieżnik Massif, Sudetes, SW Poland)
by Anna Cedro, Bernard Cedro, Ryszard Krzysztof Borówka, Daniel Okupny, Paweł Osóch, Krzysztof Stefaniak, Bronisław Wojtuń, Marek Kasprzak, Urszula Ratajczak-Skrzatek, Paweł Kmiecik, Krzysztof Rusinek, Martin Jiroušek, Vítězslav Plášek, Anna Hrynowiecka and Adam Michczyński
Forests 2024, 15(6), 986; https://doi.org/10.3390/f15060986 - 5 Jun 2024
Cited by 1 | Viewed by 2424
Abstract
During an interdisciplinary study of the mire “Torfowisko pod Małym Śnieżnikiem”, a very old specimen of the Norway spruce (Picea abies L.) was encountered. The aim of the present work was to perform a detailed examination of this tree, to compare it [...] Read more.
During an interdisciplinary study of the mire “Torfowisko pod Małym Śnieżnikiem”, a very old specimen of the Norway spruce (Picea abies L.) was encountered. The aim of the present work was to perform a detailed examination of this tree, to compare it to other spruce trees on the mire, and to provide support for establishing protection for this tree stand. Tree ring cores were sampled at 1.3 m above ground using a Pressler borer, in two field campaigns: June and July 2023, the latter campaign aiming to find the oldest trees. A total of 46 trees were sampled, yielding 84 measured radii. Tree ring widths were measured down to 0.01 mm under a stereomicroscope. The oldest sampled tree yielded a total of 370 tree rings in the two radii, representing the period 1653–2022. The average tree ring width for this oldest tree equals 0.33 mm/year, and shows low values (on average 0.19 mm/year) for the period 1742–1943, i.e., during the Little Ice Age cooling. Changes in the tree ring width coincide with periods of cooling and warming in the nearby Tatra Mountains. The oldest tree does not stand out from other trees from the population with respect to height or trunk diameter. A comparison of the age of this tree to the oldest spruce trees in Poland indicates that it is one of the longest living specimens of this species. Considering the natural character of the stand, the remaining flora, and the peat-forming processes taking place within the mire “Pod Małym Śnieżnikiem”, we argue that the mire should become protected by the law as soon as possible in order to preserve this valuable high mountain habitat. Full article
(This article belongs to the Special Issue Effects of Climate Change on Tree-Ring Growth)
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15 pages, 1984 KiB  
Article
Development of In-Needle SPME Devices for Microextraction Applied to the Quantification of Pesticides in Agricultural Water
by Ahmed Ali Alshehri, Bechir Hammami, Mohammed Mousa Alshehri, Taieb Aouak, Rabab A. Hakami and Ahmed Yacine Badjah Hadj Ahmed
Molecules 2024, 29(11), 2628; https://doi.org/10.3390/molecules29112628 - 3 Jun 2024
Cited by 1 | Viewed by 1661
Abstract
The chemical industry explosion in the 20th century has led to increased environmental pollution, affecting fauna, flora, and waterways. These substances alter water’s taste, color, and smell, making it unfit for consumption or toxic. Agricultural water networks face threats from pollution before and [...] Read more.
The chemical industry explosion in the 20th century has led to increased environmental pollution, affecting fauna, flora, and waterways. These substances alter water’s taste, color, and smell, making it unfit for consumption or toxic. Agricultural water networks face threats from pollution before and after treatment. Some chemical contaminants, like pesticides, are embedded in natural biogeochemical cycles. In this study, we developed a simple and low-cost procedure for the fabrication of needles coated with polydimethylsiloxane (PDMS) as an efficient sorbent for the microextraction of organic pollutant traces from water. The prepared needles were used as an alternative for commercial solid-phase micro-extraction (SPME) devices in analytical chemistry. The PDMS polymeric phase was characterized by Fourier-transform infrared spectroscopy (FT-IR), thermogravimetry (TGA), and scanning electron microscopy (SEM). The PDMS-coated needles were used for extraction of thirteen pesticides by direct-immersion solid-phase microextraction (DI-SPME) from contaminated waters, followed by determination with gas chromatography-mass spectrometry (GC-MS). The developed analytical method showed limits of detection (LODs) between 0.3 and 2.5 ng mL−1 and RSDs in the range of 0.8–12.2%. The homemade needles were applied for the extraction of pesticides in surface and ground aqueous samples collected from an agricultural area. Several target pesticides were identified and quantified in the investigated water samples. Full article
(This article belongs to the Special Issue Analytical Chemistry in Agriculture Application)
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20 pages, 3026 KiB  
Article
Desalination in Spain and the Role of Solar Photovoltaic Energy
by Miquel Àngel Martínez-Medina, Miguel Ángel Pérez-Martín and Teodoro Estrela
J. Mar. Sci. Eng. 2024, 12(6), 859; https://doi.org/10.3390/jmse12060859 - 22 May 2024
Cited by 3 | Viewed by 3332
Abstract
Water scarcity will increase in the world in the coming decades due to climate change, especially in areas that currently already have water scarcity, such as the Mediterranean area. In these areas, to guarantee water resources, systems’ sustainability is necessary to improve demand [...] Read more.
Water scarcity will increase in the world in the coming decades due to climate change, especially in areas that currently already have water scarcity, such as the Mediterranean area. In these areas, to guarantee water resources, systems’ sustainability is necessary to improve demand management and the development of non-conventional resources, such as treated wastewater reuse or seawater desalination. These non-conventional resources are highly energy-consuming; so, reducing energy costs is a key element in developing their use in different sectors, including agriculture. Combining photovoltaic solar energy with seawater desalination by reverse osmosis will reduce the cost of producing water to below 0.36 EUR/m3; so, this resource can be attractive for agriculture, as demonstrated in this work. The arrangement of bifacial solar modules in horizontal single-axis tracking systems increases the energy amount generated from the sun in one hour or more, improving the facility’s efficiency and reducing the desalinated water cost. The greater distance between the solar module lines, with a ground coverage ratio (GCR) = 0.3, makes for a better environmental integration of the facility and allows the development of agrovoltaic strategies, such as native flora planting and pollinator colonization. Full article
(This article belongs to the Special Issue The Use of Hybrid Renewable Energy Systems for Water Desalination)
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14 pages, 3757 KiB  
Article
Microbial Detoxification of Sediments Underpins Persistence of Zostera marina Meadows
by Yuki Nakashima, Takumi Sonobe, Masashi Hanada, Goushi Kitano, Yoshimitsu Sonoyama, Katsumi Iwai, Takashi Kimura and Masataka Kusube
Int. J. Mol. Sci. 2024, 25(10), 5442; https://doi.org/10.3390/ijms25105442 - 16 May 2024
Cited by 1 | Viewed by 1547
Abstract
Eelgrass meadows have attracted much attention not only for their ability to maintain marine ecosystems as feeding grounds for marine organisms but also for their potential to store atmospheric and dissolved CO2 as blue carbon. This study comprehensively evaluated the bacterial and [...] Read more.
Eelgrass meadows have attracted much attention not only for their ability to maintain marine ecosystems as feeding grounds for marine organisms but also for their potential to store atmospheric and dissolved CO2 as blue carbon. This study comprehensively evaluated the bacterial and chemical data obtained from eelgrass sediments of different scales along the Japanese coast to investigate the effect on the acclimatization of eelgrass. Regardless of the eelgrass habitat, approximately 1% Anaerolineales, Babeliales, Cytophagales, and Phycisphaerales was present in the bottom sediment. Sulfate-reducing bacteria (SRB) were present at 3.69% in eelgrass sediment compared to 1.70% in bare sediment. Sulfur-oxidizing bacteria (SOB) were present at 2.81% and 1.10% in the eelgrass and bare sediment, respectively. Bacterial composition analysis and linear discriminant analysis revealed that SOB detoxified H2S in the eelgrass meadows and that the larger-scale eelgrass meadows had a higher diversity of SOB. Our result indicated that there were regional differences in the system that detoxifies H2S in eelgrass meadows, either microbial oxidation mediated by SOB or O2 permeation via the physical diffusion of benthos. However, since bacterial flora and phylogenetic analyses cannot show bias and/or causality due to PCR, future kinetic studies on microbial metabolism are expected. Full article
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15 pages, 2621 KiB  
Article
Woody Species Composition, Stand Structure and Regeneration Status of Londiani Forest in Kenya
by Evalyne Kosgey Chepkoech, Humphrey Agevi, Henry Lung’ayia and Harrison Mugatsia Tsingalia
Forests 2024, 15(4), 653; https://doi.org/10.3390/f15040653 - 3 Apr 2024
Cited by 1 | Viewed by 1887
Abstract
Tropical forests provide habitats for diverse flora and fauna, in addition to playing a crucial role in climate regulation. They are being recognized for their roles as nature-based solutions to many sustainable development challenges, as shown by increased political commitment and global promises [...] Read more.
Tropical forests provide habitats for diverse flora and fauna, in addition to playing a crucial role in climate regulation. They are being recognized for their roles as nature-based solutions to many sustainable development challenges, as shown by increased political commitment and global promises to reduce the rates of deforestation and boost the restoration of degraded forest ecosystems. Understanding tropical forest dynamics and their conservation status is therefore important. This study analysed the forest stand structure, the tree species composition and the regeneration status of Londiani Forest. In the three blocks of Londiani Forest, which are Kedowa, Chebewor and Londiani, belt transects that were 25 m wide and 1 km long were established. At every 200 m along the transects, 25 m × 25 m quadrats were set up in which an inventory of all the tree species was determined. Diameter tape was used to measure the diameter at breast height (DBH) 1.3 m above the ground. With the use of a Suunto angular clinometer, the tree height was measured. A nested 5 m × 5 m quadrat within the 25 m × 25 m quadrat was used to sample the saplings, while a 1m × 1 m quadrat was used to sample the seedlings. The quantities of seedlings and saplings were used to determine the state of regeneration. The data were entered into Microsoft Excel. The total stem density, species density, basal area, species basal area, relative density and species diversity were determined and extrapolated per hectare. A total of 1308 distinct trees from 34 different species and 24 families were counted. Kedowa recorded the highest (27) species richness, followed by Chebewor (19) and then Londiani (14). There was a statistically significant difference in the species richness among the three forest blocks (p < 0.05). Within the three forest blocks, there were no statistically significant variations in the basal area distribution (p > 0.005) or in the mean DBH (F = 0.560; p = 0.729) or height class distribution (F = 0.821; p = 0.558). There was a statistically significant difference in the stem density (F = 12.22; p = 0.005) and woody species diversity (F = 0.32; p = 0.001) within the three forests blocks. The similarity index ranged from 0.34–0.47. The presence of substantial numbers of seedlings and saplings in all forest blocks was an indication that there was regeneration. Full article
(This article belongs to the Special Issue Ecological Forestry and Restoration)
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16 pages, 1968 KiB  
Article
Ground Cover Vegetation in Differently Managed Hemiboreal Norway Spruce Stands: Plantation vs. Natural Regeneration
by Ilze Matisone, Juris Katrevičs, Diāna Jansone, Ieva Jaunslaviete, Roberts Matisons, Agnese Anta Liepiņa and Āris Jansons
Diversity 2024, 16(4), 203; https://doi.org/10.3390/d16040203 - 28 Mar 2024
Cited by 1 | Viewed by 2030
Abstract
Forest plantations, which have a simplified structure and composition, are becoming more frequent, raising concerns regarding their contribution to biological diversity in highly managed landscapes. The biological value of a stand has been related to stand age, although stand properties, which are often [...] Read more.
Forest plantations, which have a simplified structure and composition, are becoming more frequent, raising concerns regarding their contribution to biological diversity in highly managed landscapes. The biological value of a stand has been related to stand age, although stand properties, which are often intercorrelated with it, yet are manageable, might be of primary importance. The relationships between stand properties (age, structure and composition) and ground cover vegetation, as a proxy for biological value, were assessed in Norway spruce stands with contrasting land use history (low-density plantations on former agricultural land, unmanaged and old-growth stands) in Latvia. The ground flora differed according to land use history of the stands. The principal gradients of ground cover vegetation were related to the degree of deciduous admixture in the tree stand, stand vertical heterogeneity (multi-layer; density and height of the understorey), light, age and site fertility. However, the plantations were more species-rich and diverse, appearing as promising in terms of biological diversity in intensively managed sites (especially periurban forests). The observed relationships between ground cover vegetation and stand characteristics suggest that diversification of the stand structures in plantations might reduce the recovery time of ground cover vegetation, contributing to the ecosystem services provided under intensifying management and disturbances. Full article
(This article belongs to the Section Plant Diversity)
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13 pages, 1085 KiB  
Review
Could Adverse Effects of Antibiotics Due to Their Use/Misuse Be Linked to Some Mechanisms Related to Nonalcoholic Fatty Liver Disease?
by Giovanni Tarantino and Vincenzo Citro
Int. J. Mol. Sci. 2024, 25(4), 1993; https://doi.org/10.3390/ijms25041993 - 6 Feb 2024
Cited by 12 | Viewed by 3231
Abstract
Nonalcoholic fatty liver disease, recently re-named metabolic dysfunction-associated steatotic fatty liver disease, is considered the most prevalent liver disease worldwide. Its molecular initiation events are multiple and not always well-defined, comprising insulin resistance, chronic low-grade inflammation, gut dysbiosis, and mitochondrial dysfunction, all of [...] Read more.
Nonalcoholic fatty liver disease, recently re-named metabolic dysfunction-associated steatotic fatty liver disease, is considered the most prevalent liver disease worldwide. Its molecular initiation events are multiple and not always well-defined, comprising insulin resistance, chronic low-grade inflammation, gut dysbiosis, and mitochondrial dysfunction, all of them acting on genetic and epigenetic grounds. Nowadays, there is a growing public health threat, which is antibiotic excessive use and misuse. This widespread use of antibiotics not only in humans, but also in animals has led to the presence of residues in derived foods, such as milk and dairy products. Furthermore, antibiotics have been used for many decades to control certain bacterial diseases in high-value fruit and vegetables. Recently, it has been emphasised that antibiotic-induced changes in microbial composition reduce microbial diversity and alter the functional attributes of the microbiota. These antibiotic residues impact human gut flora, setting in motion a chain of events that leads straight to various metabolic alterations that can ultimately contribute to the onset and progression of NAFLD. Full article
(This article belongs to the Section Biochemistry)
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