Search Results (2,080)

Tungiasis is a cutaneous ectoparasitosis caused by the penetration of gravid female Tunga penetrans fleas into the epidermis. Although endemic in tropical and subtropical regions, it remains rare in Europe, where most cases are travel-associated and secondary household transmission is seldom documented. This study describes imported tungiasis in Greece and investigates possible secondary household transmission in a non-endemic setting. Seven Greek men residing in Attica developed tungiasis following occupational exposure in Tanzania, together with one secondary case in a non-travelling household contact who had never travelled outside Greece. Diagnosis was based on clinical and dermoscopic findings and confirmed by amplification and sequencing of the mitochondrial cytochrome oxidase I (COI) gene. Household investigations were also performed. Eight male patients presented with painful plantar and/or subungual nodular lesions. Sequence analysis of COI demonstrated 657/662 bp (99%) identity with the Tunga penetrans reference sequence, and identical sequences were identified in all samples. A representative sequence was deposited in GenBank (accession no. PZ336383). All patients exhibited mild-to-moderate elevations of hepatocellular and cholestatic liver enzymes, which resolved within two weeks following treatment. One probable secondary household case was identified, and no infestation was detected among additional cohabitants or companion animals. This report documents imported tungiasis with probable secondary household transmission in Greece and highlights the importance of clinical awareness and environmental assessment in non-endemic settings. Full article

The subtropical and tropical islands of East Asia host a unique and highly endemic aquatic insect fauna threatened by a variety of anthropogenic stressors (e.g., invasive species, habitat fragmentation, pollution, and climate change). This review synthesizes the impacts of these stressors on aquatic insect diversity across this region based on 206 articles published over the past 40 years (1985–2025) to evaluate the impacts of these stressors on insular aquatic insect diversity. The islands of East Asia include all or parts of China, Japan, Taiwan, and South Korea. The annual number of publications demonstrates a steady upward trend over time and has been accelerating in the last decade. Our systematic analysis reveals a large geographic disparity. Research is heavily concentrated on major islands, with Honshu Island (42%) and Taiwan Island (24%) accounting for two-thirds of the total literature, while small islands (<10,000 km²) comprise only 20%. Furthermore, current research tends to focus on independent impacts of single stressors, largely overlooking the complex additive, synergistic, or antagonistic interactions that characterize stressors on these fragile ecosystems. These research gaps, compounded by a lack of long-term monitoring data (i.e., only ~22% of the studies span more than 3 years), hinder efforts to distinguish natural inter-annual variability from anthropogenic shifts. The extinction of cryptic or endemic species may occur before these species are identified and described. In addition, the disentanglement of these interactive impacts on aquatic insect communities in East Asian islands is critical for predicting ecosystem responses to further local and global changes. Identification of non-linear ecological tipping points through these long-term monitoring networks, coupled with proactive, science-guided habitat restoration, is essential to mitigate imminent extinctions and to rebuild the functional integrity of these imperiled freshwater ecosystems. Full article

Mediterranean rivers experience various pressures that cause native fish populations to decline. This is the case of Achondrostoma asturicense, a threatened endemic species recently classified as "endangered" (EN) by the Portuguese Red Book. In northeastern Portugal, the main populations occur in the Carvalhais (Tua basin), Maçãs, and Angueira (Sabor basin) rivers. This study aimed to evaluate the effect of small weirs on the distribution, abundance, and habitat use of A. asturicense populations along the longitudinal gradient of River Angueira. Three river zones (Z1 to Z3) affected by small weirs were selected along the watercourse. In each zone, four sampling sites were distributed relative to the weir, as follows: A1—200 m downstream; A2—immediately downstream; A3—under the influence of the reservoir; and A4—200 m upstream (reference). Sampling was carried out in three seasons: winter, spring, and summer 2025. Physical–chemical (water), hydromorphological (habitats), and biological (fish) elements were assessed in accordance with the protocols of the Water Framework Directive. The results revealed the worst water quality in the summer season due to flow reduction, dissolved oxygen depletion, elevated conductivity, and high nutrient (N, P) concentrations, leading to eutrophication phenomena. The distribution and abundance of A. asturicense were negatively influenced by the presence of small weirs, which were dominated by the non-native species Lepomis gibbosus. PERMANOVA analysis (two-way, p < 0.05) identified significant differences (Pseudo-F = 28.349, p < 0.05) between sampling sites and river zones, and paired similarity analysis tests (ANOSIM; one-way, p < 0.05) confirmed that these differences occur only between the weir reservoir (A3) and the remaining sampling sites. A. asturicense showed a maximum length (Lmax) of 135 mm, isometric growth only in the upstream zone (Z1), and significant differences in body condition (0.75 < K < 0.84). This species showed a preference for rheophilic habitats, with coarse substrate and diversity of currents and distinct cover mainly guaranteed by submerged aquatic macrophytes. A. asturicense populations are severely affected in the River Angueira by habitat fragmentation, riparian degradation, pollution, invasive alien species (e.g., L. gibbosus, P. clarkii, N. vison), and climate change, justifying the development of mitigation and restoration measures for the conservation of natural habitats and native threatened species. Full article

Mediterranean organic viticulture requires sustainable pest management strategies that leverage local soil biodiversity. This study isolated endemic entomopathogenic fungi from vineyard soils in Nemea, Greece, using a dual-insect baiting system with Tribolium confusum and Sitophilus spp. The recovered isolates caused complete mortality in bait insects, with mycelial emergence from 93.75% of cadavers. DNA sequencing of the ITS1 region identified the recovered isolates as Purpureocillium lilacinum. Phylogenetic analysis revealed that Nemea isolates (TD and TM series) form a monophyletic clade with 100% bootstrap support, showing distinct genetic divergence from the reference strain P. lilacinum NRRL 895—evidence of a unique “microbial terroir.” Virulence assays demonstrated species-dependent mortality against stored-product pests: Sitophilus granarius was the most susceptible (76.7% mortality; LT₅₀ = 1.9 days), followed by Sitophilus zeamais (61.1%; LT₅₀ = 2.7 days), Tribolium confusum (56.7%; LT₅₀ = 2.8 days), and Sitophilus oryzae (50.0%; LT₅₀ = 3.3 days). Mycosis confirmation (65–83%) and 0% control mortality confirmed pathogenicity. As locally adapted biological control agents, these endemic P. lilacinum strains are highly suitable for protecting crops from major insect pests. Full article

Endemic human coronaviruses (HCoVs) are important contributors to respiratory infections, yet genomic data from sub-Saharan Africa remain limited. We analyzed 13,530 nasopharyngeal samples collected through the national influenza sentinel surveillance network in Côte d’Ivoire between 2022 and 2024 to characterize the circulation and genomic diversity of endemic HCoVs. A subset of 52 RT-qPCR-positive samples with Ct values ≤ 28 was selected for targeted hybrid-capture sequencing using the Twist Bioscience Respiratory Virus Research Panel. Genome recovery metrics were available for 28 samples, including HCoV-NL63 (n = 9), HCoV-229E (n = 8), HCoV-OC43 (n = 9), and HCoV-HKU1 (n = 2). Endemic HCoVs circulated throughout the study period, with temporal variation across species and increased detections during several rainy-season months. No co-presence of multiple endemic HCoV species was identified in the final analytical dataset. Genome recovery differed by species, with broader and more consistent coverage for HCoV-OC43 and HCoV-NL63 than for HCoV-229E and HCoV-HKU1. Phylogenetic analysis showed that all recovered HCoV-229E genomes clustered within genotype L6 and all recovered HCoV-HKU1 genomes within genotype A, whereas HCoV-OC43 and HCoV-NL63 were distributed across multiple genotypes among recovered genomes. To our knowledge, these findings provide the first genomic data on endemic HCoVs from Côte d’Ivoire and support the feasibility and further targeted integration of targeted hybrid-capture sequencing into routine genomic surveillance of respiratory viruses. Full article

Blood-borne parasites, including Babesia spp., Theileria spp., and Anaplasma spp., pose significant threats to buffalo health and productivity, highlighting the need for continuous epidemiological surveillance in endemic regions such as Thailand. This study aimed to investigate the molecular prevalence of hemoparasites and characterize the genetic diversity of Theileria orientalis in swamp buffaloes from Northeast Thailand. A total of 176 blood samples were analyzed using genus- and species-specific PCR assays. Samples positive for T. orientalis were subjected to DNA sequencing of the MPSP gene, followed by haplotype and phylogenetic analyses. Overall, 19.3% (95% CI: 13.8–25.9) of samples were positive for at least one hemoparasite. The prevalence of T. orientalis, Babesia bigemina, and B. bovis was 15.9%, 3.4%, and 2.3%, respectively. Notably, all B. bovis infections occurred as co-infections with T. orientalis. Anaplasma spp. showed the lowest prevalence (1.7%), comprising A. marginale 0.6% and A. platys 1.1%. Sequence analysis of T. orientalis revealed significant genetic diversity within the population. Subsequent phylogenetic and pairwise distance analyses identified four distinct genotypes including Type 7, which was found to be predominant, followed by Type 5, Type N2 and Type 4. This study provides molecular evidence of hemoparasite infections and highlights the complex genetic diversity of T. orientalis in Thai water buffaloes. The co-circulation of multiple genotypes and co-infections underscore the need for improved epidemiological monitoring and targeted control strategies in the region. Full article

Introduction: Populations of freshwater fish species of the Iberian Peninsula have been declining since the mid-20th century, and several types of actions (from in situ to ex situ actions) have been applied over the past decades. However, limited knowledge about their reproductive biology makes it necessary to investigate different aspects of the reproductive cycle for improving breeding programs. Objective: The main objective of this work was to advance knowledge in the sperm biology of two endemic fish from Portugal rivers, trying to check whether breeding in captivity is a factor able to modulate sperm subpopulations. Methodology: Populations of different endangered leuciscid species (Iberochondrostoma lusitanicum, IL, and Achondrostoma occidentale, AO) were sampled during the spring of 2022 both in captive populations kept at Aquário Vasco da Gama (AVG) and in wild populations (WILD) from different Portuguese rivers. Sperm samples were collected, and sperm motion parameters were assessed by using a CASA system (VSL, VAP, STR, LIN, WOB, ALH and BCF). Results: The application of a two-step cluster analysis yielded four sperm subpopulations (SP1, SP2, SP3 and SP4) in both species. SP1 comprised fast, linear spermatozoa (high VCL, LIN, STR). SP2 contained slow linear cells (low VCL, high LIN, STR). SP3 included fast nonlinear spermatozoa (high VCL, low LIN, STR). SP4 represented slow nonlinear cells, with low values for all three kinematic parameters. Regarding the origin of fish (wild and captive), and for both species, WILD leuciscids showed higher values of linear and fast sperm subpopulation (SP1) than captive fish (AVG), which showed a higher percentage of non-linear subpopulations (SP3 and SP4). Conclusions: In this context, and given that fast and linear spermatozoa (SP1) have traditionally been correlated with high fertilization success in many fish species, these results may indicate that breeding in captivity over a long period of time may affect gamete quality, making it necessary to renew the broodstock from time to time to avoid reproductive problems (i.e., loss of sperm quality and cases of inbreeding). Full article

Introduction: Otoliths have been widely used in recent years as tracers of fish life history, ranging from visual aging to chemical analyses that reconstruct environmental conditions, migration patterns, and metabolic changes. Yet, Iberian endemic or endangered species are understudied. This study focuses on Andalusian barbel (Luciobarbus sclateri), endemic to the southern half of the Iberian Peninsula. Objective: The aim was to evaluate whether otolith chemical profiles can simultaneously support age estimation and reveal the impact of environmental variations, particularly hypoxia. Methodology: Fish were caught in two sites with different environmental properties, including strong hypoxia: the Guadalquivir estuary and the dock of Seville (which is isolated from the main river channel by a ship lock and could, therefore, be used as a control). Otolith chemical composition was analyzed from core-to-edge transects with a laser-inductively coupled plasma mass spectrometer (LA ICP-MS). Results: Patterns of variation in Mg and Mn in relation to hypoxia and environmental conditions are discussed. We visually counted growth rings in the sections, and we found a strong correlation (R² = 0.904) in Mg:Ca peaks with growth rings. Body condition, assessed using Fulton’s condition factor (K), differed between sites, with fish from the estuary exhibiting a lower condition than those from the dock. Conclusions: The strong correlation between counter growth rings and Mg:Ca peaks suggests that chemical analysis could be used as a valid method for supporting aging. The pattern of lower condition in fish from the estuary is consistent with persistent hypoxic events documented in the estuary but not within the dock environment. This whole approach provides a powerful framework to assess habitat quality and support conservation of L. sclateri in the Guadalquivir estuary. Full article

Biological invasions and freshwater biodiversity loss are two of the most pressing global conservation challenges yet their interaction during the earliest stages of invasion remains poorly understood. Iberian freshwaters rank among Europe’s most biodiverse ecosystems, harbouring a remarkable assemblage of endemic fish species. This irreplaceable heritage is increasingly threatened by non-native piscivorous predators, to which endemic species often lack innate antipredator responses. The invasive European perch (Perca fluviatilis) was first detected in the Meimoa reservoir, within the Malcata Natural Reserve (Central Portugal), in 2023, and has since expanded exponentially in abundance while dispersing into adjacent stream networks. This emerging invasion provided a unique opportunity to assess the predation impacts of a novel piscivorous predator during the early stages of establishment and dispersion, across both lentic and lotic habitats. From 2022 to 2025, European perch were sampled in the invaded reservoir using gillnetting and in connected streams with electrofishing. Diet was assessed through stomach content analysis, and prey composition was analyzed in relation to site, season, year and ontogeny. European perch exhibited a clear ontogenetic diet shift as expected, from zooplankton and invertebrates to crayfish and fish, with minor variation in prey composition between systems. In the Meimoa reservoir, body size was the strongest driver of diet composition (PERMANOVA: R² = 0.134, p < 0.001), with 50% of the stomachs from individuals above 35 cm containing fish, with the Iberian nase, Pseudochondrostoma polylepis, being the dominant prey. Diet composition remained stable across years (R² = 0.007; p = 0.188), despite a 74% decline in nase catch per unit effort (CPUE) between 2022 and 2025. In streams, despite the absence of large perch, piscivory was recorded earlier and encompassing a broader range of native taxa. The sustained predation pressure on P. polylepis, a formerly dominant and culturally significant species, despite its steep population decline, suggests that European perch holds the potential to locally deplete native fish stocks. The advance of this predator into lotic habitats demands urgent conservation action, as it may critically threaten the long-term persistence of one of Portugal’s most vulnerable freshwater taxonomic groups. Full article

Objectives: Patients with thalassemia major are at high risk of developing blood-borne infections, including toxoplasmosis, due to their dependence on frequent blood transfusions and underlying immune system disorders. This study was designed to investigate this hidden risk and provide data for policymaking in blood transfusion services in a region with a high endemicity. Methods: A total of 300 blood samples from thalassemia patients in northern Iran were collected. Serological testing was conducted to detect IgG and IgM antibodies. DNA extraction followed, with molecular screening performed via PCR. Finally, genotyping of T. gondii was carried out using nested PCR focused on the GRA6 gene. Results: The serological analysis revealed 59.7% of patients exhibited IgG against T. gondii, while only 0.6% tested positive for IgM. The results of the molecular screening revealed 2.7% of patients had DNA of T. gondii. The results of genetic analysis showed 75% had type II, 12.5% had type I, and 12.5% belonged to type III. Conclusions: This study provides serological and molecular evidence of a high chronic Toxoplasma gondii burden in thalassemia patients from northern Iran, an endemic region. A significant association between blood transfusion history and seropositivity, along with parasite DNA detection, suggests elevated exposure risk, though direct transfusion transmission remains unproven. Finding’s support integrating nested PCR with routine serology for diagnosing infection in this population. Full article

Introduction: Fish species represent 25% of all vertebrates across the globe and are one of the most threatened animal groups. At least 40% of the fish fauna occurs in rivers for part of their life cycle. European rivers are home to more than 600 fish species, while also being some of the most impaired and altered ecosystems. Objective: The objective was to assess the vulnerability of freshwater fish communities in European river basins. Methodology: Using RivTool and the CCM2 database, we developed the River Restoration Units (R2Us), a set of spatial units that takes into account river network functioning and allows a higher spatial discretisation than river basins. We developed RivFish, a database about the presence of native freshwater-dependent fish in 1556 Europeans river basins. For this, we collected data from 77 references and validated synonyms and scientific names for 667 species. We used the latest International Union for Conservation of Nature (IUCN) Red List assessment to define species distributions in European rivers. After intersecting with the R2U layer, we curated and validated species names and spatial occurrence using RivFish. To map the vulnerability of freshwater fish communities, we used the Habitats Directive (HD) and the IUCN datasets. These consider a distinct number of species and assess conservation status differently: the HD evaluated 165 species, while the IUCN evaluated 516 species. The HD data allowed calculating the composite indicator of Conservation Status, whereas the IUCN data enabled calculating the vulnerability index. Results: Both ana-lyses show higher richness in central Europe, particularly in the Danube basin. Spatially, both highlight southern Europe as the area where fish communities have the highest vulnerability. However, the HD analysis also indicates the Danube and the western Atlantic basins as having high vulnerability. The IUCN analysis shows the Anatolian and Mediterranean biogeographical regions as those with the highest vulnerability values. Conclusions: Southern Europe’s higher vulnerability is likely associated with restricted distribution ranges and high levels of endemicity in Mediterranean fish communities. Overall, these findings improve current knowledge and show that input data may be key to effort allocation towards the management and conservation of European freshwater fish communities. Full article

Background and Objectives: Brucellosis remains a significant zoonotic disease in endemic regions such as Saudi Arabia, with children being particularly vulnerable. Pediatric brucellosis often presents with nonspecific symptoms, and hematological abnormalities can serve as important yet underrecognized diagnostic clues. This study aimed to evaluate the demographic, clinical, microbiological, treatment, and hematological characteristics of patients with pediatric brucellosis in the Hail region of Saudi Arabia and to assess the diagnostic value of hematological parameters. Methods: This retrospective observational study included children aged ≤15 years who were diagnosed with brucellosis at a tertiary care hospital in Hail between 2014 and 2025. Demographic, clinical, laboratory, microbiological, and treatment data were analyzed. Hematological parameters were compared between culture-confirmed and non-culture-confirmed brucellosis cases using multivariate and receiver operating characteristic (ROC) analyses. Results: A total of 38 pediatric patients were included (mean age 8.6 years; 57.9% male). Positive culture results were observed in 42.1% of the cases, with Brucella melitensis being the predominant species (68.75%). Fever (89.5%) and bone/joint pain (71.1%) were the most frequent symptoms. Culture-confirmed brucellosis patients had significantly lower hemoglobin levels (10.8 vs. 12.1 g/dL; p = 0.020), white blood cell counts (p = 0.046), and absolute neutrophil counts (p = 0.037). ROC analysis revealed a fair diagnostic performance for hemoglobin (AUROC = 0.695), WBC (0.699), and ANC (0.680). Leukopenia demonstrated high specificity (95.5%) and positive predictive value. Conclusions: Pediatric brucellosis is commonly associated with anemia, leukopenia, and neutropenia. Although no single hematological parameter independently predicts infection, the combination of these abnormalities may support early clinical suspicion, particularly in resource-limited endemic settings. Full article

P. grumi Berg, an endemic species of the Turpan Basin, constitutes an important component of the local aquatic biodiversity. This study aimed to identify the growth model that best describes the growth characteristics of P. grumi Berg and provide baseline biological information on this poorly studied species in Turpan. The research was conducted in the Turpan Basin in November 2024 and March 2025. A total of 527 specimens were collected, with body lengths ranging from 39.0 to 96.0 mm and body weights ranging from 0.69 to 16.00 g. The female-to-male sex ratio was 3.6:1. Age determination based on otolith analysis indicated that individuals ranged from 1 to 5 years old, with age groups 2–3 years predominating in the population, with age groups 2–3 years predominating in the population. The length–weight relationship for females was W = 4.0674 × 10⁻⁵L^2.7695 (R² = 0.8028), for males was W = 1.2645 × 10⁻⁵L^3.02 (R² = 0.9103), and for the combined population was W = 1.9513 × 10⁻⁵L^2.9321 (R² = 0.8221). The von Bertalanffy growth parameters were estimated as follows: L_∞ = 102.25 mm, k = 0.331, t₀ = −0.7548, Φ = 2.3297, t_i = 3.5392; L_∞ = 105.82 mm, k = 0.2157, t₀ = −0.6737, Φ = 4.4503, t_i = 3.3829. The results suggest that the P. grumi Berg population may currently exhibit an increasing population trend; however, the age structure was dominated by younger individuals, indicating a relatively unstable population structure. These findings enrich the basic biological information available for P. grumi Berg and provide an important scientific basis for future conservation and management strategies. Full article

Sungaya inexpectata is a tropical stick insect endemic to the Philippines, providing a useful system for investigating cold responses in tropical ectotherms. In this study, we exposed individuals to low temperature (8 °C) and normal temperature (25 °C) and characterized their transcriptomic responses. A total of 1656 differentially expressed genes were identified, including those involved in energy metabolism, cuticular proteins (CPs), and heat shock proteins. Since CP-related genes were notably enriched, we focused on this family. qPCR assessment provided preliminary expression profiles for selected candidate CP genes. Using comparative transcriptomics with eight New Zealand alpine stick insect species, we reconstructed the phylogeny of major CP families and annotated their conserved domains. Clade analysis revealed significant positive selection in the CPAP3-3 gene. In summary, this study reveals the transcriptional response of cuticular protein genes in S. inexpectata under cold exposure at 8 °C. These findings provide preliminary transcriptional data for understanding how this species responds to low temperature. Full article

In this study, we sequenced, assembled, and characterized the first complete chloroplast (cp) genome of Eutrema scapiflorum, an alpine species endemic to the Qinghai–Tibet Plateau (QTP). The assembled plastome is 153,041 bp in length and exhibits a typical quadripartite structure, comprising a large single-copy (LSC) region of 83,547 bp and a small single-copy (SSC) region of 17,506 bp, which are separated by two inverted repeats (IRs) of 25,994 bp each. Structurally, the genome encodes 132 unique genes, including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Comparative analysis across eight species revealed that genome size variation is primarily driven by the SSC region. Notably, the IR/SC boundaries in E. scapiflorum are highly conserved, which contrasts with the significant IR expansion observed in Capsella tenella. Furthermore, simple sequence repeat (SSR) analysis identified 78 loci, predominantly mononucleotide A/T repeats located in intergenic spacers. Nucleotide diversity analysis pinpointed accD and ycf1 as the most variable genes. Selection pressure analysis indicated that most genes are under purifying selection, while seven protein-coding genes (ycf2, nadhE, cemA, clpP, psbH, ycf4, nadhB) exhibited signatures of positive selection (Ka/Ks > 1). Subsequently, phylogenomic analyses robustly resolved E. scapiflorum within the tribe Arabideae, showing its closest relationship to Alliaria petiolata. Divergence time estimation dated the split between E. scapiflorum and its closest relative to the middle Miocene (~17.57 Ma). Collectively, these findings provide crucial genomic resources and new insights into the structural evolution, phylogenetic placement, and potential adaptive mechanisms of this alpine species within the Brassicaceae family. Full article