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Keywords = dehydrogenase activity (DHA)

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19 pages, 1390 KB  
Article
Heterotrophic Soil Microbes at Work: Short-Term Responses to Differentiated Fertilization Inputs
by Florin Aonofriesei, Alina Giorgiana Brotea (Andriescu) and Enuță Simion
Biology 2026, 15(1), 41; https://doi.org/10.3390/biology15010041 - 26 Dec 2025
Viewed by 281
Abstract
The interaction between organic and inorganic nutrients, bacterial communities, and soil fertility has been well documented over time. Conventional agricultural systems heavily utilize both inorganic and organic fertilizers, each exerting distinct effects on soil microbial dynamics and plant growth. The objective of our [...] Read more.
The interaction between organic and inorganic nutrients, bacterial communities, and soil fertility has been well documented over time. Conventional agricultural systems heavily utilize both inorganic and organic fertilizers, each exerting distinct effects on soil microbial dynamics and plant growth. The objective of our experiments was to identify the most effective fertilization strategy for improving the biological quality of a microbiologically impoverished and low-productivity soil. To this end, four fertilization strategies were evaluated: (i) organic fertilizers characterized by a high content of organic carbon (Fertil 4-5-7—variant 1); (ii) organic fertilizers with 12% organic nitrogen from proteins (Bio Ostara N—variant 2) (iii) combined inorganic–organic fertilizers (P35 Bio—variant 3) and (iv) mineral (inorganic) fertilizers (BioAktiv—variant V4). This study aimed to assess the short-term effects of fertilizers with varying chemical compositions on the density of cultivable heterotrophic bacteria and their associated dehydrogenase (DH) activity in a petrocalcic chernozem soil containing pedogenic carbonates. Soil sampling was conducted according to a randomized block design, comprising four replicates per treatment (control plus four fertilizer types). The enumeration of cultivable bacteria was performed using Nutrient Agar and A2R Agar media, whereas dehydrogenase activity (DHA) was quantified based on the reduction of 2,3,5-triphenyl-2H-tetrazolium chloride (TTC) to 1,3,5-triphenyl-tetrazolium formazan (TPF) by bacterial dehydrogenase enzymes. Marked differences were observed in both parameters between the plots amended with inorganic fertilizers and those treated with organic fertilizers, as well as among the organic fertilizer treatments of varying composition. The most pronounced increases in both bacterial density and dehydrogenase activity (DHA) were recorded in the plots receiving the fertilizer with a high organic nitrogen content. In this treatment, the maximum bacterial population density reached 6.25 log10 CFU g−1 dry soil after approximately two months (May), followed by a significant decline starting in July. In contrast, DHA exhibited a more rapid response, reaching its peak in April (42.75 µg TPF g−1 soil), indicating an earlier DHA activation of microbial metabolism. This temporal lag between the two parameters suggests that enzymatic activity responded more swiftly to the nutrient inputs than did microbial biomass proliferation. For the other two organic fertilizer variants, bacterial population dynamics were broadly similar, with peak densities recorded in June, ranging from 5.98 log10 CFU g−1 soil (V3) to 6.03 log10 CFU g−1 soil (V1). A comparable trend was observed in DHA: in V3, maximum DHA was attained in June (30 µg TPF g−1 soil), after which it remained relatively stable, whereas in V1, it peaked in June (24.05 µg TPF g−1 soil) and subsequently declined slightly toward the end of the experimental period. Overall, the temporal dynamics of bacterial density and DHA demonstrated a strong dependence on the quality and biodegradability of the organic matter supplied by each fertilizer. Both parameters were consistently lower under inorganic fertilization compared with organic treatments, suggesting that the observed increases in microbial density and activity were primarily mediated by the enhanced availability of organic substrates. The relationship between the density of culturable heterotrophic bacteria and dehydrogenase (DH) activity was strongly positive (r = 0.79), indicating a close functional linkage between bacterial density and oxidative enzyme activity. This connection suggests that the culturable fraction of the heterotrophic microbial community plays a key role in the early stages of organic matter mineralization derived from the applied fertilizers, particularly in the decomposition of easily degradable substrates. Full article
(This article belongs to the Special Issue The Application of Microorganisms and Plants in Soil Improvement)
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15 pages, 9088 KB  
Article
Fyn-T Kinase Regulates DHA-Induced Pyroptosis in Immortalized Normal Human Astrocytes
by Ai Ling Cheng, Yuek Ling Chai, Jasinda H. Lee, Clara Y. B. Low, Helen L. Ong, Gavin S. Dawe, Thiruma V. Arumugam, Deron R. Herr, Michelle G. K. Tan and Mitchell K. P. Lai
Cells 2025, 14(19), 1530; https://doi.org/10.3390/cells14191530 - 30 Sep 2025
Viewed by 703
Abstract
Dysregulation of astroglia-mediated neuroinflammation is known to be involved in neurodegenerative diseases. Amongst multiple inflammatory pathways, pyroptosis is characterized by inflammatory cell death following inflammasome activation. Recently, the omega-3 poly-unsaturated fatty acid, DHA, has been identified as a pyroptosis inducer, although the underlying [...] Read more.
Dysregulation of astroglia-mediated neuroinflammation is known to be involved in neurodegenerative diseases. Amongst multiple inflammatory pathways, pyroptosis is characterized by inflammatory cell death following inflammasome activation. Recently, the omega-3 poly-unsaturated fatty acid, DHA, has been identified as a pyroptosis inducer, although the underlying mechanisms remain unclear. In this study, we investigated the role of the alternatively spliced T-isoform of Fyn kinase (FynT) in DHA-induced astroglial pyroptosis. Immortalized normal human astrocytes (iNHA) expressing wild-type FynT (FynT-WT), kinase-dead mutant FynT (FynT-KD), or empty vector (EV) controls were treated with DHA and assessed for pyroptotic activation. We found that DHA-treated FynT-WT cells exhibited significantly reduced cytosolic lactate dehydrogenase release, pyroptotic morphology and markers (cleaved caspase-1 and its substrates, cleaved caspase-3 and gasdermin-D N fragments) compared to either EV or FynT-KD cells. No significant differences in pyroptotic activation were observed between EV and FynT-KD cells. In addition, no differences in immunoreactivities of pro- or anti-apoptotic markers (Bax or Bcl-2) were observed across the DHA-treated cells. In summary, our study postulates a negative regulatory role of FynT kinase in DHA-induced pyroptosis in astrocytes, with implications for further understanding neuroinflammatory mechanisms in neurodegenerative diseases and identification of potential therapeutic targets. Full article
(This article belongs to the Section Cellular Neuroscience)
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23 pages, 2091 KB  
Article
Depicting the Physiological, Biochemical and Metabolic Responses to the Removal of Adventitious Roots and Their Functions in Cucumis melo Under Waterlogging Stress
by Huanxin Zhang, Chengpu Yan, Qian Chen and Guoquan Li
Agronomy 2025, 15(10), 2281; https://doi.org/10.3390/agronomy15102281 - 26 Sep 2025
Viewed by 826
Abstract
Waterlogging poses a grave abiotic stress that hampers crop productivity and survival due to reduced oxygen availability in the impacted tissues. To adapt to this hypoxic environment, the hypocotyls of melon (Cucumis melo L.) seedlings can produce a profusion of adventitious roots [...] Read more.
Waterlogging poses a grave abiotic stress that hampers crop productivity and survival due to reduced oxygen availability in the impacted tissues. To adapt to this hypoxic environment, the hypocotyls of melon (Cucumis melo L.) seedlings can produce a profusion of adventitious roots when exposed to waterlogging stress. However, research on the significance of these adventitious roots under waterlogging stress has been limited. The present study aimed to elucidate the critical role of adventitious roots by investigating the physiological, biochemical, and metabolic changes that occur following their removal during waterlogging stress. The removal of adventitious roots compromised the normal growth of melon seedlings, resulting in phenotypic abnormalities such as chlorotic and withered leaves. Our results indicated that the removal of adventitious roots led to significant reductions in total chlorophyll levels by 62.89% and 43.60% compared to the normal control condition and waterlogging stress alone, respectively. Additionally, in the adventitious root removal treatment, higher malondialdehyde (MDA) content, O2•− production rate, monodehydroascorbate reductase (MDHAR) activity, alcohol dehydrogenase (ADH) activity, the AsA/DHA ratio, proline content, jasmonic acid (JA) content, and 1-aminocyclopropane-1-carboxylic acid (ACC) content were observed. Specifically, JA levels were significantly enhanced by 180.54% and 52.05%, and ACC levels were significantly increased by 519.23% and 125.16% compared to the control and waterlogging stress conditions, respectively. Through untargeted metabolomic analysis, a total of 447 differentially accumulated metabolites (DAMs) were identified. Notably, jasmonic acid and brassinolide, which are involved in plant hormone signal transduction, along with cyanidin 3-(2G-xylosylrutinoside) classified as flavonoids, (2S,3′S)-α-amino-2-carboxy-5-oxo-1-pyrrolidinebutanoic acid categorized as proline and derivatives, and ligstroside-aglycone and foeniculoside VII annotated as terpenoids, exhibited key roles in the waterlogging response. This research enhances our understanding of the mechanisms underlying the removal of adventitious roots during waterlogging stress, as well as the associated physiological, biochemical, and metabolic changes. These findings provide valuable insights into the crucial role of adventitious roots in melon seedlings subjected to waterlogging stress and may inform strategies for enhancing waterlogging tolerance in breeding practices. Full article
(This article belongs to the Section Plant-Crop Biology and Biochemistry)
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23 pages, 2328 KB  
Article
Constructed Wetlands with Novel Substrate Exposed to Nano-Plastics: Mitigating the Effects of Substrate Enzyme and Ecological Processes
by Luming Wang, Juan Huang, Jing Tuo, Jin Xu and Xinwei Li
Toxics 2025, 13(9), 800; https://doi.org/10.3390/toxics13090800 - 20 Sep 2025
Viewed by 1004
Abstract
The widespread occurrence of nano-plastics (NPs) in aquatic environments poses emerging challenges to the pollutant removal performance and ecological stability of constructed wetlands (CWs). This study investigates the performance of calcium-modified (Ca-MBF) and manganese-modified basalt fiber (Mn-MBF) bio-nests as novel substrates to mitigate [...] Read more.
The widespread occurrence of nano-plastics (NPs) in aquatic environments poses emerging challenges to the pollutant removal performance and ecological stability of constructed wetlands (CWs). This study investigates the performance of calcium-modified (Ca-MBF) and manganese-modified basalt fiber (Mn-MBF) bio-nests as novel substrates to mitigate NP-induced inhibition of CWs. Laboratory-scale CWs were operated for 180 days to evaluate substrate-associated enzyme activities, microbial community structure, and functional gene profiles. Results showed that Mn-MBF bio-nests enhanced the activities of dehydrogenase (DHA), urease (UR), ammonia monooxygenase (AMO), nitrite oxidoreductase (NOR), nitrate reductase (NAR), nitrite reductase (NIR), and phosphatase (PST) by 86.2%, 65.5%, 127.0%, 62.8%, 131.5%, 65.3%, and 107.0%, respectively, compared with the control. In contrast, Ca-MBF bio-nests increased these enzyme activities by 48.6%, 53.5%, 67.0%, 30.6%, 95.0%, 45.3%, and 54.6%, respectively. MBF bio-nests also enhanced microbial diversity, enriched denitrifying and phosphorus-removing bacteria (e.g., Thauera, Plasticicumulans), and promoted extracellular polymeric substance secretion. Functional gene prediction indicated elevated abundances of nitrogen cycle-related genes, thereby enhancing nitrification, denitrification, and phosphorus removal processes. These synergistic effects collectively improved nitrification, denitrification, and phosphorus removal efficiency, with Mn-MBF showing superior performance. This study highlights MBF bio-nests as a sustainable strategy to enhance the resilience and long-term operational stability of CWs in environments impacted by nano-plastic pollution. Full article
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16 pages, 1336 KB  
Article
Synergistic Effects of Lavandula angustifolia and a Bacterial Consortium on Bioremediation of a Heavy Metal-Contaminated Soil
by Cristina Cavone, Aurora Rutigliano, Pietro Cotugno, Ludovica Rolando, Chiara De Carolis, Anna Barra Caracciolo, Paola Grenni, Ilaria Savino, Antonio Bucci, Gino Naclerio, Fulvio Celico, Vito Felice Uricchio and Valeria Ancona
Plants 2025, 14(17), 2734; https://doi.org/10.3390/plants14172734 - 2 Sep 2025
Viewed by 4196
Abstract
Heavy metal (HM) contamination represents a significant threat to soil functionality and ecosystem health. The present study aims to assess the efficacy of an integrated bioremediation strategy combining Lavandula angustifolia (lavender) and a four-strain bacterial consortium in restoring a multi-contaminated soil collected from [...] Read more.
Heavy metal (HM) contamination represents a significant threat to soil functionality and ecosystem health. The present study aims to assess the efficacy of an integrated bioremediation strategy combining Lavandula angustifolia (lavender) and a four-strain bacterial consortium in restoring a multi-contaminated soil collected from a former industrial site in Southern Italy. Microcosm experiments were conducted over a period of 90 days, including three treatments and a control: a planted condition (PLANT), a bioaugmented condition (BIOAUG), and a combined plant and bioaugmentation condition (PLANT+BIOAUG). The control (HCS) consisted of unplanted and non-bioaugmented soil. Soil physico-chemical parameters (e.g., pH, electrical conductivity, and heavy metal concentrations), plant growth, microbial abundance, and dehydrogenase activity (DHA) were measured at the initial and final experimental time. Finally, a Soil Quality Index (SQI) was applied. The combined treatment (PLANT+BIOAUG) promoted a significant reduction in total Pb and Sn concentrations by 44.7% and 66.9%, respectively. Moreover, a significant increase in soil pH and microbial abundance was observed. Applying the SQI to integrate overall soil data made it possible to highlight the highest quality score (0.73) for this condition. These findings suggest the potential effectiveness of lavender-assisted bioaugmentation as a scalable and multifunctional strategy for remediating heavy metal-contaminated soils, in line with ecological restoration principles. Full article
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19 pages, 2255 KB  
Article
Evaluating the Impact of Near-Natural Restoration Strategies on the Ecological Restoration of Landslide-Affected Areas Across Different Time Periods
by Sibo Chen, Jinguo Hua, Wanting Liu, Siyu Yang and Wenli Ji
Plants 2025, 14(15), 2331; https://doi.org/10.3390/plants14152331 - 28 Jul 2025
Viewed by 1333
Abstract
Landslides are a common geological hazard in mountainous areas, causing significant damage to ecosystems and production activities. Near-natural ecological restoration is considered an effective strategy for post-landslide recovery. To investigate the impact of near-natural restoration strategies on the recovery of plant communities and [...] Read more.
Landslides are a common geological hazard in mountainous areas, causing significant damage to ecosystems and production activities. Near-natural ecological restoration is considered an effective strategy for post-landslide recovery. To investigate the impact of near-natural restoration strategies on the recovery of plant communities and soil in landslide-affected areas, we selected landslide plots in Lantian County at 1, 6, and 11 years post-landslide as study sites, surveyed plots undergoing near-natural restoration and adjacent undisturbed control plots (CK), and collected and analyzed data on plant communities and soil properties. The results indicate that vegetation succession followed a path from “human intervention to natural competition”: species richness peaked at 1 year post-landslide (Dm = 4.2). By 11 years, dominant species prevailed, with tree species decreasing to 4.1 ± 0.3, while herbaceous diversity increased by 200% (from 4 to 12 species). Soil recovery showed significant temporal effects: total nitrogen (TN) and dehydrogenase activity (DHA) exhibited the greatest increases after 1 year post-landslide (132% and 232%, respectively), and by 11 years, the available nitrogen (AN) in restored plots recovered to 98% of the CK levels. Correlations between plant and soil characteristics strengthened over time: at 1 year, only 6–9 pairs showed significant correlations (p < 0.05), increasing to 21–23 pairs at 11 years. Near-natural restoration drives system recovery through the “selection of native species via competition and activation of microbial functional groups”. The 6–11-year period post-landslide is a critical window for structural optimization, and we recommend phased dynamic regulation to balance biodiversity and ecological functions. Full article
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22 pages, 1527 KB  
Article
Phytoaccumulation of Heavy Metals in Flowers of Tilia cordata Mill. and Soil on Background Enzymatic Activity
by Anna Figas, Magdalena Tomaszewska-Sowa, Anetta Siwik-Ziomek and Mirosław Kobierski
Forests 2025, 16(6), 991; https://doi.org/10.3390/f16060991 - 11 Jun 2025
Cited by 1 | Viewed by 1150
Abstract
The phytoaccumulation of Fe, Mn, Cu, Zn, and Pb in Tilia cordata flowers and soils from six locations with varying degrees of anthropopressure in Bydgoszcz city and its surroundings (Poland) was assessed. Additionally, metal concentrations and soil enzymatic activity were analyzed. Enrichment Factor [...] Read more.
The phytoaccumulation of Fe, Mn, Cu, Zn, and Pb in Tilia cordata flowers and soils from six locations with varying degrees of anthropopressure in Bydgoszcz city and its surroundings (Poland) was assessed. Additionally, metal concentrations and soil enzymatic activity were analyzed. Enrichment Factor analysis revealed significant Zn enrichment at only one locality, supported by a geoaccumulation index value indicating moderate soil pollution. Total metal content in soils correlated with total organic carbon (TOC), while total iron content correlated with the clay fraction (<0.002 mm). Metal concentrations were comparable to the geochemical background levels for soils in Poland. Assessment of total metal contents in the topsoil surface layer from the six locations indicated that concentrations did not exceed permissible limits established by applicable legislation. The study showed that sampling locations influenced the activities of dehydrogenase (DHA), fluorescein diacetate hydrolysis (FDA), β-glucosidase (GL), and arylsulfatase (AR), and these activities correlated more strongly with pedogenic factors than with metal content. No elevated metal levels were detected in the dry mass of T. cordata flowers. Lead content did not exceed 10 mg·kg−1 dry matter, in accordance with World Health Organization (WHO) recommendations. Continued monitoring of trace element levels in soils and T. cordata flowers, particularly in urban environments, is advisable. Full article
(This article belongs to the Section Forest Soil)
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20 pages, 2829 KB  
Article
Actinobacteria Emerge as Novel Dominant Soil Bacterial Taxa in Long-Term Post-Fire Recovery of Taiga Forests
by Siyu Jiang, Huijiao Qu, Zhichao Cheng, Xiaoyu Fu, Libin Yang and Jia Zhou
Microorganisms 2025, 13(6), 1262; https://doi.org/10.3390/microorganisms13061262 - 29 May 2025
Cited by 3 | Viewed by 1247
Abstract
The long-term post-fire recovery phase is a critical stage for forest ecosystems to progress toward regeneration and mature succession. During this process, soil bacteria exhibit greater environmental adaptability, rapidly driving nutrient cycling and facilitating vegetation restoration. This study investigated the community structure and [...] Read more.
The long-term post-fire recovery phase is a critical stage for forest ecosystems to progress toward regeneration and mature succession. During this process, soil bacteria exhibit greater environmental adaptability, rapidly driving nutrient cycling and facilitating vegetation restoration. This study investigated the community structure and diversity of soil bacteria during long-term recovery after forest fires in the cold temperate zone, focusing on soils from the 2000 fires in Daxing’anling. Soil samples were classified into Low (L), Moderate (M), and High (H) fire damage intensity, with bacterial community composition and diversity analyzed using Illumina sequencing technology. After long-term fire recovery, the contents of soil organic carbon, black carbon, total nitrogen, alkaline nitrogen, available phosphorus, and available potassium were significantly higher elevated (p < 0.05), and water content was significantly lower, compared with that in the control check (CK) group. Soil urease, fluorescein diacetate, soil acid phosphatase, and soil dehydrogenase activities were significantly higher, and soil sucrase activity was significantly lower in H. There was a significant difference in the Alpha diversity index among the groups. Compared with CK, the Shannon index was significantly increased (p < 0.05) in L, while both Chao1 and Shannon indices were significantly decreased (p < 0.05) in M and significantly higher in H than CK. The results of the PCoA showed that there was a significant difference in the Beta diversity of the bacterial community among the groups (R2 = 0.60 p = 0.001). The dominant bacteria groups were Proteobacteria and Acidobacteriota, while Actinobacteria became the new dominant group during the long-term post-fire recovery. AP, WC, DOC, MBC, S-DHA, and S-SC were significantly and positively correlated with soil bacterial diversity (p < 0.05). The results of the co-occurrence network analysis showed that all groups were dominated by symbiotic relationships, with M having the highest network complexity and strongest competitive effects. This study found that the physicochemical properties of soils recovered over a long period of time after fire returned to or exceeded the unfired forest condition. The Actinobacteria phylum became a new dominant bacterial group, with stronger network complexity and competition, in the process of forest recovery after moderate fire. Full article
(This article belongs to the Special Issue Advances in Genomics and Ecology of Environmental Microorganisms)
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16 pages, 1187 KB  
Article
Drought Stress Drives Sex-Specific Physiological and Biochemical Differences in Female and Male Litsea cubeba
by Ming Gao, Yunxiao Zhao, Yicun Chen and Yangdong Wang
Horticulturae 2025, 11(6), 594; https://doi.org/10.3390/horticulturae11060594 - 27 May 2025
Viewed by 925
Abstract
Numerous studies have focused on dioecious plants and their sex-specific responses to drought stress. However, sexual dimorphism in drought stress responses between male and female Litsea cubeba, a dioecious species significant to the terrestrial ecosystem in China that is frequently exposed to [...] Read more.
Numerous studies have focused on dioecious plants and their sex-specific responses to drought stress. However, sexual dimorphism in drought stress responses between male and female Litsea cubeba, a dioecious species significant to the terrestrial ecosystem in China that is frequently exposed to drought conditions, remains insufficiently characterized. In this study, we examined the sex-specific physiological and biochemical responses of L. cubeba to natural drought stress. The results revealed that natural drought induced significant sexual dimorphism in physiological and biochemical traits of L. cubeba. Females exhibited a higher malondialdehyde (MDA) content than males under prolonged drought conditions; females also exhibited significantly higher catalase (CAT) and peroxidase (POD) activities in both leaves and roots compared to males, with the average CAT and POD activities of all varieties increasing by 104.28% and 23.67% in leaves and 51.17% and 174.57% in roots, respectively. Meanwhile, the dehydrogenase (DHA) activity and chlorophyll (chl) and carotenoid levels of females were higher than those of males. The contents of proline (Pro), soluble sugar (SS), abscisic acid (ABA), and jasmonic acid (JA) in females were significantly higher than those in males. Our results demonstrated that females possess a greater tolerance to natural drought stress than males; this is due to their more efficient antioxidant system, better osmotic adjustment, lower chlorophyll degradation rate, and higher concentrations of ABA and JA, which aid in stomatal closure and facilitate the reactive oxygen species (ROS)-scavenging abilities of females in response to drought stress. Our findings provide evidence that dioecious L. cubeba may adopt distinct survival strategies during natural drought events and enhance our understanding of sexually dimorphic responses to drought stress in L. cubeba. Full article
(This article belongs to the Special Issue Germplasm, Genetics and Breeding of Ornamental Plants)
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20 pages, 1893 KB  
Article
Effect of Paulownia and Buckwheat Intercropping on Soil Microbial Biodiversity, Dehydrogenase Activity, and Glomalin-Related Soil Protein
by Małgorzata Woźniak, Marek Liszewski, Anna Jama-Rodzeńska, Elżbieta Gębarowska, Sylwia Siebielec, Agata Kaczmarek, Bernard Gałka, Dariusz Zalewski and Przemysław Bąbelewski
Agronomy 2025, 15(4), 888; https://doi.org/10.3390/agronomy15040888 - 2 Apr 2025
Cited by 1 | Viewed by 1429
Abstract
Intercropping of trees and classical crops has been proposed as a practice to help adapt to climate change and protect soil against erosion. However, the effects of intercropping on soil biology are not sufficiently quantified. Therefore, the aim of this study was to [...] Read more.
Intercropping of trees and classical crops has been proposed as a practice to help adapt to climate change and protect soil against erosion. However, the effects of intercropping on soil biology are not sufficiently quantified. Therefore, the aim of this study was to evaluate microbiological changes in the soil resulting from the intercropping of Paulownia and buckwheat. A field experiment, involving an intercropping and control no-tree variant, was conducted from 2019 to 2022 with a plot size of 30 m2. Buckwheat rhizosphere soil samples were collected twice in both 2021 and 2022 in order to evaluate the effects of intercropping on a range of parameters describing soil microbiome status: abundance of microorganisms, bacterial and fungal community structure (using Illumina MiSeq sequencing), dehydrogenases (DHA) activity, and total glomalin-related soil proteins (T-GRSP). In addition, the colonisation of buckwheat roots by fungi, yield, and biometric traits of the plant were determined. Next-generation sequencing showed that Actinobacteria, Proteobacteria, and Acidobacteria were dominant in the microbiome of every variant of the experiment, regardless of the crop. In contrast, the mycobiome was dominated by fungi classified as Ascomycota and Mortierellomycota. This observation corresponded to an increase in buckwheat yield in intercropped plots. Biometric traits, namely buckwheat yield and total kernel weight per plant, showed higher values when buckwheat was intercropped with Paulownia compared to the control. DHA activity was stimulated by intercropping at the first sampling date, whereas glomalin concentration and abundance of microorganisms were not dependent on the cropping systems tested. This study shows that tree-based intercropping (TBI) systems promote a more diverse soil microbial community and function than conventional agriculture. Our results also suggest that TBI positively impacts buckwheat biometric traits, supporting its implementation in rural landscapes. The yield under intercropping cultivation amounted to 0.65 t ha−1, while in control sites it was 0.53 t ha−1. The total abundance of bacteria under intercropping cultivation was higher compared to monoculture in 2021 at the first term of sampling (4.3 × 104) and in 2022 in the second term of soil sampling (4.6 × 104). Full article
(This article belongs to the Special Issue The Role of Phytobiomes in Plant Health and Productivity)
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21 pages, 4044 KB  
Article
The Effect of Soil Tillage Systems on the Soil Microbial and Enzymatic Properties Under Soybean (Glycine max L. Merrill) Cultivation—Implications for Sustainable Soil Management
by Jacek Długosz, Bożena Dębska and Anna Piotrowska-Długosz
Sustainability 2024, 16(24), 11140; https://doi.org/10.3390/su162411140 - 19 Dec 2024
Cited by 4 | Viewed by 1999
Abstract
Reducing soil tillage with the application of catch-crop green mass as a mulch is a conservation practice that is used in agriculture to improve soil ecosystem functioning. Such a cultivation method enhances soil organic matter quantity and quality through the improvement of soil [...] Read more.
Reducing soil tillage with the application of catch-crop green mass as a mulch is a conservation practice that is used in agriculture to improve soil ecosystem functioning. Such a cultivation method enhances soil organic matter quantity and quality through the improvement of soil biological activity and nutrient availability, while reducing soil disturbance. Therefore, a three-year field experiment was conducted in the years 2017–2019 to evaluate the effect of three tillage methods (TMs) (conventional, CT; reduced, RT; and strip tillage, ST) on soil microbial and specific enzyme properties (microbial C and N content, the activity of dehydrogenases—DHA, the rate of fluorescein sodium salt hydrolysis—FDAH, CMC-cellulase—Cel and β-glucosidase—Glu) and certain basic soil properties. The study was performed in a field; it was a one-factor experiment that was carried out in a randomized block design. The soil samples were collected from the upper soil layer five times a year: in April (before the sowing of soybean), May, June, August and September (before soybean harvesting). The tillage methods or sampling dates used had no significant effect on the organic carbon and total nitrogen levels. Most of the C-related properties (the content of microbial biomass and the C-cycling enzymatic activity such as Cel and Glu) and microbial activity bioindicators (DHA activity, FDAH rate) revealed significant seasonal changes, whereby each variable was affected in a different order (e.g., the Cel activity was significantly higher in April and September than in other months—22%, while the DHA activity was significantly higher in June and August compared to other months—18%). RT significantly increased the enzymatic activity as compared to CT and ST, and the difference was between 8 and 33% (with a mean of 18%). The exception was the β-glucosidase activity as determined in 2019, which was significantly higher in the case of CT (1.02 mg pNP kg−1 h−1) and ST than in RT (0.705 mg pNP kg−1 h−1). However, the explanation for such phenomenon could not possibly be based on the available data. Our results suggested that the response of the enzyme activities toward the same factor may be due to the inherent variability in enzyme response associated with the spatial variability in soil properties as well as the properties of the enzyme itself and changes in the periodic occurrence of its substrates in the soil. Generally, the reduced tillage combined with plant residues return could be recommended for enhancing soil health and quality by improving its microbial and enzymatic features. The findings above suggest that a reduced tillage system is an important component of soil management in sustainable agriculture. Full article
(This article belongs to the Special Issue Sustainable Environmental Analysis of Soil and Water)
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12 pages, 2218 KB  
Article
Effects of a Novel Tripyrasulfone Herbicide on Key Soil Enzyme Activities in Paddy Rice Soil
by Penglei Sun, He Sun, Shuo Yu, Lei Lian, Tao Jin, Xuegang Peng, Xiangju Li, Weitang Liu and Hengzhi Wang
Plants 2024, 13(22), 3138; https://doi.org/10.3390/plants13223138 - 7 Nov 2024
Viewed by 1757
Abstract
Weeds significantly impact paddy yields, and herbicides offer a cost-effective, rapid, and efficient solution compared to manual weeding, ensuring agricultural productivity. Tripyrasulfone, a novel 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor developed by Qingdao Kingagroot Chemicals Co., Ltd., has demonstrated high efficacy when applied post-emergence, causing [...] Read more.
Weeds significantly impact paddy yields, and herbicides offer a cost-effective, rapid, and efficient solution compared to manual weeding, ensuring agricultural productivity. Tripyrasulfone, a novel 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor developed by Qingdao Kingagroot Chemicals Co., Ltd., has demonstrated high efficacy when applied post-emergence, causing characteristic foliar bleaching in susceptible weed species, distinct from conventional acetolactate synthase, acetyl-CoA carboxylase, and synthetic auxin herbicides. This study investigates the impact of tripyrasulfone on the activity of key soil enzymes (urease (UE), acid phosphatase (ACP), sucrase (SC), catalase (CAT), and dehydrogenase (DHA)) in paddy soils from Jilin Province and Shandong Province. Different doses of tripyrasulfone (0.1, 1.0, and 2.5 mg kg−1) were applied, and the enzymatic activities were measured. Results indicated that tripyrasulfone initially inhibited UE and ACP activities before activating them. On the 20th day after treatment, UE activity had returned to control levels, whereas ACP activity remained significantly higher, showing long-lasting activation. SC and CAT activities were inhibited but gradually recovered to control levels. Furthermore, DHA activity was activated with a sustained effect, remaining significantly higher than the control group even 20 days after treatment. Overall, the impact of tripyrasulfone on soil enzyme activities diminished over time, suggesting that tripyrasulfone posed minimal long-term ecological risk to soil health. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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13 pages, 2606 KB  
Article
Catalytic Potential-Guided Design of Multi-Enzymatic System for DHA Production from Glycerol
by Carolina Fernández-Pizarro, Lorena Wilson and Oscar Romero
Processes 2024, 12(9), 2014; https://doi.org/10.3390/pr12092014 - 19 Sep 2024
Cited by 2 | Viewed by 1624
Abstract
The growing demand for sustainable chemical production has spurred significant interest in biocatalysis. This study is framed within the biocatalytic production of 1,3-dihydroxyacetone (DHA) from glycerol, a byproduct of biodiesel manufacturing. The main goal of this study is to address the challenge of [...] Read more.
The growing demand for sustainable chemical production has spurred significant interest in biocatalysis. This study is framed within the biocatalytic production of 1,3-dihydroxyacetone (DHA) from glycerol, a byproduct of biodiesel manufacturing. The main goal of this study is to address the challenge of identifying the optimal operating conditions. To achieve this, catalytic potential, a lumped parameter that considers both the activity and stability of immobilized biocatalysts, was used to guide the design of a multi-enzymatic system. The multi-enzymatic system comprises glycerol dehydrogenase (GlyDH) and NADH oxidase (NOX). The enzymatic oxidation of glycerol to DHA catalyzed by GlyDH requires the cofactor NAD+. The integration of NOX into a one-pot reactor allows for the in situ regeneration of NAD+, enhancing the overall efficiency of the process. Furthermore, immobilization on Ni+2 agarose chelated supports, combined with post-immobilization modifications (glutaraldehyde crosslinking for GlyDH), significantly improved the stability and activity of both enzymes. The catalytic potential enabled the identification of the optimal operating conditions, which were 30 °C and pH 7.5, favoring NOX stability. This work establishes a framework for the rational design and optimization of multi-enzymatic systems. It highlights the crucial interplay between individual enzyme properties and process conditions to achieve efficient and sustainable biocatalytic transformations. Full article
(This article belongs to the Special Issue Application of Enzymes in Sustainable Biocatalysis)
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16 pages, 1176 KB  
Article
Diversified Cover Crops and No-Till Enhanced Soil Total Nitrogen and Arbuscular Mycorrhizal Fungi Diversity: A Case Study from the Karst Area of Southwest China
by Lihua Tian, Tao Wang, Song Cui, Yuan Li, Weiyang Gui, Feng Yang, Jihui Chen, Rui Dong, Xinyao Gu, Xuechun Zhao, Mingjun Zhang, Chao Chen and Zhou Li
Agriculture 2024, 14(7), 1103; https://doi.org/10.3390/agriculture14071103 - 9 Jul 2024
Cited by 6 | Viewed by 3027
Abstract
The deteriorating soil health under continuous monoculture is commonly found across various cropping systems. This study evaluated the effects of different tillage practices (conventional tillage and no till) and species mixtures (legumes and grasses) on arbuscular mycorrhizal fungi (AMF) community properties, soil nutrients, [...] Read more.
The deteriorating soil health under continuous monoculture is commonly found across various cropping systems. This study evaluated the effects of different tillage practices (conventional tillage and no till) and species mixtures (legumes and grasses) on arbuscular mycorrhizal fungi (AMF) community properties, soil nutrients, and enzyme activity in a 3-year experiment. Compared with traditional tillage, the number of AMF species under no-till conditions was increased, with the Glomus group being dominant. Under different tillage conditions, TN (total N) and AN (available N) contents under no till were significantly higher than those under conventional tillage, while no significant differences among other nutrients were found. The activities of soil acid phosphatase (S-ACP), soil dehydrogenase (S-DHA), and soil sucrose (S-SC) under conventional tillage were significantly higher than those under no till, and the cover crop mixtures also had an exclusive advantage in yield. Soil organic matter (SOM) indicated a significant negative correlation with glomalin-related soil protein (GRSP). The increase in diversity associated with the AMF species community was strongly correlated with the increase in three enzyme activities, and AN was negatively correlated with all species. Tillage did not significantly change soil chemistry, except for AN, and the high concentration of AN led to a decrease in AMF species. The results of this study showed that no till was an effective measure for enriching soil micro-organism population. Additionally, soil AMF diversity was improved by cover crop mixtures, and microbial diversity was higher than that under monoculture cover crops. Different AMF groups responded differently to tillage and cover crop mixtures. Across all mixtures, the combination of hairy vetch (Vicia villosa R.) and ryegrass (Lolium perenne L.) performed the best. Full article
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16 pages, 7427 KB  
Article
Nano-Bioremediation of Arsenic and Its Effect on the Biological Activity and Growth of Maize Plants Grown in Highly Arsenic-Contaminated Soil
by Mahmoud El Sharkawy, Arwa A. AL-Huqail, Alya M. Aljuaid, Nourhan Kamal, Esawy Mahmoud, Alaa El-Dein Omara, Nasser Abd El-Kader, Jian Li, Nashaat N. Mahmoud, Ahmed A. El Baroudy, Adel M. Ghoneim and Sahar Mohamed Ismail
Nanomaterials 2024, 14(13), 1164; https://doi.org/10.3390/nano14131164 - 8 Jul 2024
Cited by 1 | Viewed by 2383
Abstract
Arsenic (As)-contaminated soil reduces soil quality and leads to soil degradation, and traditional remediation strategies are expensive or typically produce hazardous by-products that have negative impacts on ecosystems. Therefore, this investigation attempts to assess the impact of As-tolerant bacterial isolates via a bacterial [...] Read more.
Arsenic (As)-contaminated soil reduces soil quality and leads to soil degradation, and traditional remediation strategies are expensive or typically produce hazardous by-products that have negative impacts on ecosystems. Therefore, this investigation attempts to assess the impact of As-tolerant bacterial isolates via a bacterial Rhizobim nepotum strain (B1), a bacterial Glutamicibacter halophytocola strain (B2), and MgO-NPs (N) and their combinations on the arsenic content, biological activity, and growth characteristics of maize plants cultivated in highly As-contaminated soil (300 mg As Kg−1). The results indicated that the spectroscopic characterization of MgO-NPs contained functional groups (e.g., Mg-O, OH, and Si-O-Si) and possessed a large surface area. Under As stress, its addition boosted the growth of plants, biomass, and chlorophyll levels while decreasing As uptake. Co-inoculation of R. nepotum and G. halophytocola had the highest significant values for chlorophyll content, soil organic matter (SOM), microbial biomass (MBC), dehydrogenase activity (DHA), and total number of bacteria compared to other treatments, which played an essential role in increasing maize growth. The addition of R. nepotum and G. halophytocola alone or in combination with MgO-NPs significantly decreased As uptake and increased the biological activity and growth characteristics of maize plants cultivated in highly arsenic-contaminated soil. Considering the results of this investigation, the combination of G. halophytocola with MgO-NPs can be used as a nanobioremediation strategy for remediating severely arsenic-contaminated soil and also improving the biological activity and growth parameters of maize plants. Full article
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