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Search Results (360)

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Keywords = cell isolation and purification

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27 pages, 20110 KB  
Article
Toxicity of High-Density Polyethylene Nanoparticles in Combination with Silver Nanoparticles to Caco-2 and HT29MTX Cells Growing in 2D or 3D Culture
by Sylwia Męczyńska-Wielgosz, Katarzyna Sikorska, Malwina Czerwińska, Agnieszka Grzelak, Anna Lankoff and Marcin Kruszewski
Molecules 2026, 31(1), 3; https://doi.org/10.3390/molecules31010003 - 19 Dec 2025
Viewed by 283
Abstract
The enormous applications of various nanoparticles (NPs) have raised the possibility that humans may be simultaneously exposed to mixtures of them in real life. Realistically, this situation may apply to plastic NPs, mainly derived from the breakdown of larger plastics, and to silver [...] Read more.
The enormous applications of various nanoparticles (NPs) have raised the possibility that humans may be simultaneously exposed to mixtures of them in real life. Realistically, this situation may apply to plastic NPs, mainly derived from the breakdown of larger plastics, and to silver NPs, both of which are among the most frequently detected NPs in the envirnment due to their applications in healthcare, consumer products, and water purification. Although numerous studies have examined the toxicity of plastic and silver NPs individually, knowledge of their combined toxicity remains limited. Hence, the main objective of our study was to investigate the toxicity of high-density polyethene nanoparticles (HDPE NPs), thermally isolated from food-cooking bags, in combination with citrate-stabilised silver nanoparticles (AgNPcit) to Caco-2 and HT29MTX cells growing in 2D monoculture or in 3D triple-culture with Raji cells. Cellular uptake of NPs was quantified from the side-scatter (SSC) signal in flow cytometry; toxicity was evaluated by the neutral red assay; apoptosis was evaluated by the Annexin V method; and induction of oxidative stress was evaluated by a fluorescent method using DCFDA and DHR probes. Both cell lines took up both types of NPs; however, HT29MTX cells were more effective in the NPs’ uptake. Interestingly, HDPE NPs and AgNPcit mutually inhibited each other’s uptake, which suggests a similar mechanism of entry. Both types of NPs were toxic to both cell lines growing in monoculture; Caco-2 cells were more susceptible than HT29MTX. The toxicity was attributed to the induction of oxidative stress and associated apoptosis. In line with the mutual inhibition of the NPs’ uptake, the toxic effect of both NPs in the mixture was less than that expected as the sum of individual treatments. The toxic effects of both NPs or their mixture were less pronounced in the triple-culture Caco-2/HT29MTX/Raji, than in Caco-2 and HT29MTX growing in monoculture. Full article
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17 pages, 2646 KB  
Article
Establishment of an Isolation System for Extracellular Vesicles of Fusarium oxysporum and Its Proteomic Analysis
by Jiayi Lou, Guangjin Hu, Xuan Wang, Qiang Liu, Yuwei Chen and Weichun Zhao
J. Fungi 2025, 11(12), 884; https://doi.org/10.3390/jof11120884 - 15 Dec 2025
Viewed by 424
Abstract
Extracellular vesicles (EVs) secreted by Fusarium oxysporum play an important role in the process of its infestation of the host, but the in vitro research system for EVs of F. oxysporum (Fo-EVs) has not yet been improved, and the mechanism of [...] Read more.
Extracellular vesicles (EVs) secreted by Fusarium oxysporum play an important role in the process of its infestation of the host, but the in vitro research system for EVs of F. oxysporum (Fo-EVs) has not yet been improved, and the mechanism of its action remains unclear. In this study, particle size distribution, particle concentration, number of particles per unit of protein, number of particles per unit of mycelial biomass, and concentration of contaminated proteins were used as indicators to evaluate the yield and purity of Fo-EVs. The optimal method for Fo-EV preparation and extraction was screened by comparing liquid culture, solid culture, and solid culture with enzymatic cell wall hydrolysis. The optimal system for Fo-EVs separation and purification was screened by a pairwise combination of three primary methods (Ultracentrifugation (UC), Ultrafiltration (UF), and Polyethylene glycol precipitation method (PEG)) and two secondary methods (Size-exclusion chromatography (SEC) and Aqueous two-phase system (ATPS)), respectively. The protein composition was identified via mass spectrometry technology, followed by GO annotation and GO enrichment analysis using whole-genome proteins as the background. Based on these steps, a Fo-EV protein library was constructed to reveal Fo-EV’s most active biological functions. The results showed that solid culture combined with the UC-SEC method could effectively enrich Fo-EVs with a typical cup-shaped membrane structure. The obtained Fo-EVs had an average particle size of 253.50 nm, a main peak value of 200.60 nm, a particle concentration of 2.04 × 1010 particles/mL, and a particle number per unit protein of 1.09 × 108 particles/μg, which were significantly superior to those of other combined methods. Through proteomic analysis, 1931 proteins enriched in Fo-EVs were identified, among which 350 contained signal peptides and 375 had transmembrane domains. GO enrichment analysis revealed that these proteins were mainly involved in cell wall synthesis, vesicle transport, and pathogenicity-related metabolic pathways. Additionally, 9 potential fungal EV markers, including Hsp70, Rho GTPase family, and SNARE proteins, were screened. This study constructed an isolation system and a marker database for Fo-EVs, providing a methodological and theoretical basis for in-depth analysis of the biological functions of Fo-EVs. Full article
(This article belongs to the Special Issue Fungal-Related Proteomics in Biotechnology and Health)
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15 pages, 3854 KB  
Article
Cascade Dielectrophoretic Separation for Selective Enrichment of Polyhydroxybutyrate (PHB)-Producing Cyanobacterium Synechocystis sp. PCC 6803
by Songyuan Yan, Sara Louise Pacheco, Asa K. Laskie, Cesar Raul Gonzalez Esquer and Lawrence Kulinsky
Micromachines 2025, 16(12), 1402; https://doi.org/10.3390/mi16121402 - 12 Dec 2025
Viewed by 307
Abstract
Maintaining favorable biological productivities in photosynthetic biomanufacturing systems, especially when the risk of contamination with competing microbes is high, remains a challenge to achieve while maintaining economic feasibility. This study presents a dielectrophoresis (DEP)-based microfluidic approach for isolating a desired strain within a [...] Read more.
Maintaining favorable biological productivities in photosynthetic biomanufacturing systems, especially when the risk of contamination with competing microbes is high, remains a challenge to achieve while maintaining economic feasibility. This study presents a dielectrophoresis (DEP)-based microfluidic approach for isolating a desired strain within a co-culture. The cyanobacterium Synechocystis sp. PCC 6803 (a strain capable of producing the bioplastic precursor polyhydroxybutyrate, or PHB) was enriched from mixed cultures containing the competing cyanobacterium Synechococcus elongatus PCC 7942 (which does not naturally produce PHB). A DEP cascade electrode system was established to increase purification efficiency through sequential enrichment, which leveraged inherent differences in cell morphology and dielectric properties, to achieve the selective separation of these strains under physiological conditions. A substantial increase in the relative abundance of PHB-producing cells was assessed by optical microscopy and flow cytometry characterization, confirming more than five-fold reduction of the Synechococcus fraction in the refined cell mix. The presented electrokinetic platform offers a scalable and effective approach for selectively enhancing desired microbial components within microbial biomanufacturing systems, leading towards improved product yields. Full article
(This article belongs to the Section C1: Micro/Nanoscale Electrokinetics)
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16 pages, 1174 KB  
Article
Isolation, Characterization, and Antioxidant Activity of Peptides Derived from Bangia fuscopurpurea
by Jiaying Ke, Nan Jia, Yusong Qiu and Chao Zhao
Foods 2025, 14(24), 4220; https://doi.org/10.3390/foods14244220 - 9 Dec 2025
Viewed by 270
Abstract
Oxidative stress is related to cellular damages and aging. Bioactive peptides have the potential to be a useful functional ingredient, although Bangia fuscopurpurea (red alga), a dense protein source, has not yet been exploited as a source of antioxidant peptide. The aim of [...] Read more.
Oxidative stress is related to cellular damages and aging. Bioactive peptides have the potential to be a useful functional ingredient, although Bangia fuscopurpurea (red alga), a dense protein source, has not yet been exploited as a source of antioxidant peptide. The aim of the study was to prepare, isolate, and characterize antioxidant peptide of B. fuscopurpurea and assess their protection against oxidative stress in vitro, in HepG2 cells, and in Caenorhabditis elegans. Protein of B. fuscopurpurea was subjected to hydrolysis with papain and purification of the hydrolysate was performed through multi-step chromatography and ultrafiltration. The LC-MS/MS identified peptides, which were synthesized and screened. Two new peptides, YPCW and GYPYK, were discovered and both of them had strong antioxidant properties in vitro, with the ABTS radical scavenging IC50 of 2.52 ± 0.37 µg/mL and ORAC of 5187 ± 78 µmol TE/g. Both peptides in H2O2-induced HepG2 cells significantly decreased the intracellular ROS and MDA and inhibited the activity of antioxidant enzymes (SOD, CAT, and GSH-Px). Moreover, YPCW and GYPYK increased the survival of C. elegans during oxidative stress and the similar response, altering antioxidant enzyme activities in vivo and MDA levels. These findings indicate that peptides obtained through B. fuscopurpurea can be useful as antioxidant agents, and they can be considered as a possible new active ingredient of functional foods or pharmaceuticals to counteract oxidative stress. Full article
(This article belongs to the Section Food Biotechnology)
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12 pages, 1132 KB  
Article
Extensive Characterization of Arapaima gigas Follicle-Stimulating Hormone (ag-Fsh) Synthesized in HEK293 Cells
by Eliana R. Lima, Thais C. A. Sevilhano, Thais C. Feitosa, João E. Oliveira, Miriam F. Suzuki, Lucas S. Torati, Paolo Bartolini and Cibele N. Peroni
Fishes 2025, 10(12), 607; https://doi.org/10.3390/fishes10120607 - 27 Nov 2025
Viewed by 280
Abstract
The cDNA sequences of the common gonadotrophic hormone α-subunit (ag-Gthα) and of the specific follicle-stimulating hormone β-subunit (ag-Fshβ) of the giant Amazonian fish Arapaima gigas have been previously isolated by our research group. A synthesis of ag-Fsh in HEK293 cells and its purification [...] Read more.
The cDNA sequences of the common gonadotrophic hormone α-subunit (ag-Gthα) and of the specific follicle-stimulating hormone β-subunit (ag-Fshβ) of the giant Amazonian fish Arapaima gigas have been previously isolated by our research group. A synthesis of ag-Fsh in HEK293 cells and its purification and preliminary characterization were also carried out. In the present work, ag-Fsh was obtained and purified from the same host cells, and an extensive physical chemical characterization was performed via RP-HPLC, HPSEC, and MALDI-TOF-MS. Ag-Fsh, when compared to human FSH (hFSH), showed a higher hydrophobicity by RP-HPLC and a higher molecular mass (MM) via HPSEC. The same higher MM was also confirmed via MALDI-TOF-MS: 35,353 Da for ag-FSH against 31,969 Da for hFSH. Its immunological activity was also confirmed via an hFSH ELISA, in comparison with the highly purified pituitary preparation of hFSH-AFP7298A, from the National Hormone and Pituitary Program (NHPP-USA), with a clear response that was, however, 1560-fold lower when compared to the purest preparation. Finally, an in vitro bioassay, based on the stimulated release of 11-ketotestosterone (11-KT) from immature A. gigas testis, quantified ag-Fsh biological activity in comparison with human chorionic gonadotropin (hCG) and with human pituitary FSH-AFP7298A, showing a potency clearly higher than that of hCG. This suggests that injections of ag-Fsh in A. gigas and ag-Fsh cDNA gene therapy applications could be used for improving the reproductive functions of this threatened species. Full article
(This article belongs to the Special Issue Advances in Fish Reproductive Physiology)
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20 pages, 23106 KB  
Article
Profiling of CD63 and EpCAM Membrane Proteins of Extracellular Vesicles on Tannic Acid-Coated Magnetic Beads Using Conventional Flow Cytometry
by Ekaterina Moiseeva, Igor Sergeev, Vasiliy Chernyshev, Olga Zaborova, Daria Kohzevnikova, Alexander Yakovlev, Olesya Kuznetsova, Alexey Tryakin, Aleksei Komlev, Dmitry Gorin and Alexey Yashchenok
Int. J. Mol. Sci. 2025, 26(23), 11324; https://doi.org/10.3390/ijms262311324 - 23 Nov 2025
Viewed by 569
Abstract
Extracellular vesicles (EVs) are considered to be a promising tool in disease diagnosis. However, the clinical translation of EV-based liquid biopsy faces significant challenges due to the lack of inexpensive, rapid, and high-throughput methods of EV analysis. Bead-based platforms, combined with conventional flow [...] Read more.
Extracellular vesicles (EVs) are considered to be a promising tool in disease diagnosis. However, the clinical translation of EV-based liquid biopsy faces significant challenges due to the lack of inexpensive, rapid, and high-throughput methods of EV analysis. Bead-based platforms, combined with conventional flow cytometry, allow for the simultaneous capture and immunolabeling of EVs. In this study, we present a new approach based on the label-free isolation of EVs by tannic acid-coated superparamagnetic beads (TASPMB) combined with immunofluorescence detection of EV membrane proteins using flow cytometry. First, we tested the molecular profiling capabilities of the approach using EVs derived from human breast and colorectal cancer cell lines and from plasma of colorectal cancer patients to recognize the tetraspanin protein CD63 and the epithelial cell adhesion molecule (EpCAM). Subsequently, the developed approach was validated to identify proteins on EVs enriched with TASPMB from the conditioned media of SKBR3 and HT29 cell cultures without preliminary purification by a size-exclusion chromatography (SEC) column. The developed approach demonstrates a high capacity for isolating EVs and subsequently profiling of their membrane proteins, with a total assay time of approximately 2 h. The approach presented here can be a promising tool for rapid detection of EV membrane proteins using conventional instruments, such as flow cytometry. Full article
(This article belongs to the Section Molecular Biophysics)
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25 pages, 4208 KB  
Article
Isolation of Red Beet Plant-Derived Nanovesicles, and Characterization of Their Molecular Content and Biological Activities in Human Cells
by Clarissa Zanotti, Antonio Dario Troise, Simona Arena, Giovanni Renzone, Sabrina De Pascale, Rosalia Ferracane, Chiara Pontecorvi, Chiara Niespolo, Angelo Gismondi, Andrea Scaloni and Mauro Marra
Int. J. Mol. Sci. 2025, 26(23), 11261; https://doi.org/10.3390/ijms262311261 - 21 Nov 2025
Viewed by 456
Abstract
Nowadays, growing evidence indicates that plant-derived nanovesicles cross biological barriers between species, including humans, and deliver therapeutic molecules that influence gene expression, affecting various processes such as inflammation, oxidative stress, and cancer. For these reasons, plant-derived nanovesicles are gaining attention as a valuable [...] Read more.
Nowadays, growing evidence indicates that plant-derived nanovesicles cross biological barriers between species, including humans, and deliver therapeutic molecules that influence gene expression, affecting various processes such as inflammation, oxidative stress, and cancer. For these reasons, plant-derived nanovesicles are gaining attention as a valuable substitute for mammalian exosomes as they offer benefits such as reduced immunogenicity, enhanced bioavailability, and the inclusion of beneficial plant metabolites. However, the development of affordable plant-derived nanovesicle-based therapies requires a robust characterization of their molecular structure and cargo, which in turn depends on obtaining sufficient quantities of homogeneous nanovesicle populations. In this study, we used an advanced purification platform combining ultrafiltration and anion exchange chromatography to isolate highly pure plant-derived nanovesicles from a new source, Beta vulgaris L. These particles were characterized in terms of size, charge, and morphology, and their molecular content was analyzed by omic technologies, including proteomics, lipidomics, and miRNomics. Their ability to promote wound healing and reduce inflammation was demonstrated in vitro using human cells. Furthermore, bioinformatic analysis linking the microRNA profile with potential human target genes provides insights into the biochemical pathways that underlie the bioactivity of nanovesicles. Full article
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21 pages, 3548 KB  
Article
Anti-Inflammatory and Antioxidant Mechanisms of Dendrobium moschatum Polysaccharide in Intestinal Epithelial Cells via TLR4-NF-κB and Nrf2 Signaling Pathways
by Ji Chen, Chunyan Ma, Xu Mo, Linhong Li, Lijuan Wu, Chaowen Zhang, Rui Li, Yuanfeng Zou, Fan Liu and Mengliang Tian
Antioxidants 2025, 14(11), 1384; https://doi.org/10.3390/antiox14111384 - 20 Nov 2025
Viewed by 862
Abstract
Dendrobium moschatum neutral polysaccharide (DMP-NP) was isolated using a water extraction–ethanol precipitation method, followed by purification with DEAE-cellulose anion-exchange resin and a dextran gel column. The resulting DMP-NP1 exhibited a weight-average molecular weight of 16.23 kDa. The molar ratio of monosaccharides was as [...] Read more.
Dendrobium moschatum neutral polysaccharide (DMP-NP) was isolated using a water extraction–ethanol precipitation method, followed by purification with DEAE-cellulose anion-exchange resin and a dextran gel column. The resulting DMP-NP1 exhibited a weight-average molecular weight of 16.23 kDa. The molar ratio of monosaccharides was as follows: glucose–mannose–galactose–fucose–rhamnose = 78.54:19.11:1.59:0.53:0.23, with a glucose-to-mannose ratio of 4.1:1. Infrared spectroscopic analysis revealed characteristic carbohydrate absorption peaks and confirmed the presence of pyranosidic linkages. NMR analysis revealed that DMP-NP1 possesses a backbone mainly formed by 1→4 glycosidic linkages, a small number of 1→6 branches, and O-acetyl substitutions at the C2 and C3 positions of mannose residues. In vitro experiments demonstrated that treatment with 0–20 μg/mL (0–1.23 μM) DMP-NP significantly enhanced the activities of catalase (CAT) and superoxide dismutase (SOD) in IPEC-J2 cells, along with upregulation of the corresponding antioxidant genes. Concurrently, DMP-NP reduced the secretion of key pro-inflammatory cytokines, including TNF-α, IL-1β, and IL-6, and downregulated the expression of genes associated with both antioxidant and inflammatory signaling pathways. Collectively, these findings indicate that DMP-NP not only prevents but also ameliorates LPS-induced inflammatory injury in intestinal epithelial cells, thereby providing a basis for the application of DMP-NP in intestinal inflammation mitigation. Full article
(This article belongs to the Section Health Outcomes of Antioxidants and Oxidative Stress)
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13 pages, 3951 KB  
Article
Development and Optimization of an RNA-Isolating Protocol for Mammalian Spermatozoa
by El Oulidi Mounia, Azzouzi Naoual, Ravel Celia, Hassani Idrissi Hind, Habbane Mouna, Fieni Francis, Galibert Francis and Akhouayri Omar
Int. J. Mol. Sci. 2025, 26(22), 11171; https://doi.org/10.3390/ijms262211171 - 19 Nov 2025
Viewed by 501
Abstract
The RNAs present in spermatozoa play a crucial role in reproduction and embryonic development. They represent a promising diagnostic tool for assessing male infertility. However, their extraction is challenging due to their low concentration and highly condensed chromatin structure, as well as the [...] Read more.
The RNAs present in spermatozoa play a crucial role in reproduction and embryonic development. They represent a promising diagnostic tool for assessing male infertility. However, their extraction is challenging due to their low concentration and highly condensed chromatin structure, as well as the presence of numerous cellular contaminants. These challenges vary across species and require the development of an optimized and reliable isolation method to obtain high-quality RNAs, which is essential for further molecular analyses regarding the roles played by these RNAs. This study evaluated two RNA extraction methods for spermatozoa in humans and other mammals (dogs, stallions, and bulls): a standard method using the NucleoSpin RNA® II kit (Macherey-Nagel) and an optimized method that combined this kit with dithiothreitol and TRIzol™ pretreatment. In addition, the samples underwent pre-purification to eliminate somatic cells. The optimized method produced a significantly higher total RNA yield along with better purity, which was confirmed by the absence of the 18S and 28S ribosomal RNA peaks, indicating the absence of somatic cell contamination. Additionally, RT-PCR was performed to validate the presence of sperm-specific markers. The quality of the extracted RNAs was assessed by sequencing the mRNA encoding the human olfactory receptor OR1D2 and observing the resulting band on an agarose slab gel with a size corresponding to its entire open reading frame. By addressing long-standing challenges in sperm RNA isolation, our method provides an easy and standardized technique for research in reproductive biology and for advancing our understanding of paternal contributions to transgenerational inheritance. Full article
(This article belongs to the Special Issue New Insights into Male Infertility and Sperm Biology)
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23 pages, 2829 KB  
Article
Purification of Lepidilines A, B, C, and D from Lepidium meyenii Walpers by Centrifugal Partition Chromatography Followed by Semi-Preparative HPLC and Preliminary Evaluation of Anticancer Activity Against Neuroblastoma Cell Lines
by Dominik Tarabasz, Estera Okoń, Anna Wawruszak, Stavros Beteinakis, Apostolis Angelis, Henry O. Meissner, Leandros A. Skaltsounis and Wirginia Kukula-Koch
Molecules 2025, 30(22), 4360; https://doi.org/10.3390/molecules30224360 - 11 Nov 2025
Viewed by 561
Abstract
Lepidium meyenii Walpers (syn. Lepidium peruvianum Chacon) has been cultivated for centuries in the Peruvian Andes as both a vegetable and a traditional medicine resource. Maca is classified as a superfood and is widely used as a dietary supplement, particularly noted for its [...] Read more.
Lepidium meyenii Walpers (syn. Lepidium peruvianum Chacon) has been cultivated for centuries in the Peruvian Andes as both a vegetable and a traditional medicine resource. Maca is classified as a superfood and is widely used as a dietary supplement, particularly noted for its potential to enhance endurance, fertility, and endocrine balance. In recent years, there has been a growing interest in the cytotoxic effects of lepidilines and their derivatives; however, these compounds have been less extensively studied due to challenges associated with their isolation. This study aims to establish optimal extraction conditions to enrich lepidiline content in the extracts and to propose an efficient isolation method for four lepidilines using a green purification technique known as Centrifugal Partition Chromatography (CPC). The isolated compounds will be evaluated for their anticancer potential utilizing the MTT assay on SK-N-SH (ATCC® HTB-11™) and SK-N-AS (ATCC® CRL-2137™) neuroblastoma cell lines. The findings indicate that Soxhlet extraction with dichloromethane resulted in the highest recovery of lepidilines, with a content of 10.24% expressed as lepidiline A. The optimal biphasic solvent mixture suitable for CPC chromatographic applications was identified as a combination of chloroform, methanol, and water (4:3:2 v/v/v) containing 60 mM HCl. When utilized in conjunction with semi-preparative high-performance liquid chromatography (HPLC), this method successfully isolated lepidilines A–D, achieving a purity exceeding 95%. Notably, lepidiline B exhibited the highest cytotoxic potential, with an IC50 value of 14.85 µg/mL in SK-N-AS cells. Full article
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39 pages, 2371 KB  
Review
Plant-Derived Modifiers for Antimicrobial Soft Denture Liners: A Review
by Patrycja Kula, Grzegorz Chladek and Izabela Barszczewska-Rybarek
Int. J. Mol. Sci. 2025, 26(22), 10848; https://doi.org/10.3390/ijms262210848 - 8 Nov 2025
Viewed by 643
Abstract
This review examines strategies to enhance the antifungal properties of commercial soft lining materials (SLMs) through modification with plant-derived oils, extracts, and powders. These natural bioactive compounds act via multiple mechanisms, including disruption of fungal cell membranes, inhibition of biofilm formation, and interference [...] Read more.
This review examines strategies to enhance the antifungal properties of commercial soft lining materials (SLMs) through modification with plant-derived oils, extracts, and powders. These natural bioactive compounds act via multiple mechanisms, including disruption of fungal cell membranes, inhibition of biofilm formation, and interference with Candida albicans metabolism, the pathogen causing denture-associated candidiasis. Their incorporation into SLM provides localized antifungal activity at the denture–mucosa interface. The review highlights Aloe vera (aloe), Azadirachta indica (neem), Ocimum basilicum (basil), Melaleuca alternifolia (tea tree), Cocos nucifera (coconut), Allium sativum (garlic), Thymus vulgaris (thyme), and chitosan as notable sources of phytotherapeutics that consistently inhibit C. albicans growth. In addition to antimicrobial effects, studies assessed both intrinsic (hardness, tensile strength, tear strength) and interfacial (bond strength) mechanical properties, as well as surface roughness. Most formulations maintained acceptable mechanical performance and improved surface smoothness. Key limitations include rapid leaching of active compounds, variability in testing methods, and insufficient in vivo and cytotoxicity data. Future research should prioritize the high-quality purification of natural extracts, the isolation of well-defined bioactive compounds, and the design of systems enabling selective and sustained release of these agents, ensuring reproducibility, enhanced stability, and clinical reliability of next-generation bioactive SLMs. Full article
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21 pages, 1313 KB  
Article
Bioactivity-Directed Isolation of Anticancer Constituents from Underexplored Folklore: Rhus punjabensis Stewart
by Saira Tabassum, Joham Sarfraz Ali, Rida Fatima Saeed, Madiha Asghar, Myra Akhtar, Abdul Momin Rizwan Ahmad and Muhammad Zia
Molecules 2025, 30(22), 4339; https://doi.org/10.3390/molecules30224339 - 8 Nov 2025
Viewed by 594
Abstract
Background: Medicinal plants continue to offer a promising source of novel bioactive compounds for cancer therapy due to their affordability, biocompatibility, and low toxicity. Rhus punjabensis Stewart, an ethnomedicinal species from the family Anacardiaceae, has long been used in the traditional medicine of [...] Read more.
Background: Medicinal plants continue to offer a promising source of novel bioactive compounds for cancer therapy due to their affordability, biocompatibility, and low toxicity. Rhus punjabensis Stewart, an ethnomedicinal species from the family Anacardiaceae, has long been used in the traditional medicine of northern Pakistan to treat inflammatory, hepatic, and infectious diseases. However, its phytochemical composition and anticancer potential remain largely unexplored. Methods: This study employed a bioactivity-guided isolation strategy to identify and characterize anticancer constituents from R. punjabensis leaves. The plant material was sequentially fractionated using solvents of increasing polarity, followed by purification via column chromatography. Each fraction and purified compound was evaluated using antioxidant (DPPH, total antioxidant capacity, and total reducing power) and cytotoxic assays, including brine shrimp lethality, Sulfo-rhodamine B (SRB) against five human cancer cell lines, protein kinase inhibition, and NF-κB chemo-preventive assays. Results: Comparative analysis of spectral data (UV, 1D/2D NMR, and ESI-MS) led to the identification of three triterpenoid compounds—Lupeol, Cycloartenol, and β-sitosterol—reported for the first time from R. punjabensis. Among them, Lupeol displayed the most potent cytotoxicity against DU-145 prostate (IC50 = 11.2 ± 1.2 μg/mL) and HL-60 leukemia (IC50 = 15.2 ± 1.1 μg/mL) cell lines and showed significant NF-κB inhibitory activity (IC50 = 19.4 ± 1.1 μg/mL), indicating its chemo-preventive potential. Cycloartenoland β-sitosterol exhibited moderate antioxidant and antimicrobial activities. Conclusion: The findings validate the ethnopharmacological use of R. punjabensis and confirm it as a new source of triterpenoids with notable anticancer activity. This study provides the first comprehensive account of its bioactive metabolites, reinforcing the significance of bioactivity-directed isolation as a powerful approach for discovering natural anticancer agents. Further in vivo and mechanistic evaluations are warranted to establish their therapeutic efficacy and safety profiles. Full article
(This article belongs to the Special Issue Natural Products Chemistry in Asia)
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22 pages, 3393 KB  
Article
Comprehensive Characterization and In Vitro Functionality Study of Small Extracellular Vesicles Isolated by Different Purification Methods from Mesenchymal Stem Cell Cultures
by Marta Venturella, Ali Navaei and Davide Zocco
Int. J. Mol. Sci. 2025, 26(21), 10602; https://doi.org/10.3390/ijms262110602 - 30 Oct 2025
Viewed by 831
Abstract
Mesenchymal stem cells (MSCs) exhibit therapeutic properties, which have been attributed to their secretome, the set of secreted factors comprising cytokines, growth factors, and extracellular vesicles (EVs). In particular, small extracellular vesicles (sEVs) or exosomes, ranging between 30 nm and 120 nm in [...] Read more.
Mesenchymal stem cells (MSCs) exhibit therapeutic properties, which have been attributed to their secretome, the set of secreted factors comprising cytokines, growth factors, and extracellular vesicles (EVs). In particular, small extracellular vesicles (sEVs) or exosomes, ranging between 30 nm and 120 nm in diameter, can target specific tissues to deliver molecular payloads, thus lending themselves as promising platform for cell-free therapies. In this study, sEVs were purified from the conditioned medium (CM) harvested from human bone marrow-derived MSC culture and purified using size-exclusion chromatography (SEC) or density gradient ultracentrifugation (DG-UC). Then sEVs were fully characterized for identity and integrity using multiple analytical methods, including single-particle, transcriptomic and proteomic analyses. Different in vitro cell-based assays were established to evaluate the biological effects of the purified sEVs. Specifically, scratch wound healing and tube formation assays using human umbilical vein endothelial cells (HUVECs) were used to evaluate the regenerative properties of MSC-sEVs. Our findings demonstrated that the in vitro functional properties of MSC-sEVs are correlated with sEVs’ purity levels obtained by different purification methods. Full article
(This article belongs to the Special Issue Exosomes—3rd Edition)
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25 pages, 3623 KB  
Article
Fusarium proliferatum PSA-3 Produces Xylanase-Aggregate to Degrade Complex Arabinoxylan
by Kanlaya Thattha, Lakha Salaipeth, Saengchai Akeprathumchai, Ken-Lin Chang, Takashi Watanabe and Paripok Phitsuwan
Catalysts 2025, 15(10), 988; https://doi.org/10.3390/catal15100988 - 16 Oct 2025
Viewed by 854
Abstract
Xylanolytic enzymes of the Fusarium species are closely associated with pathogenesis, where they soften plant cell walls to facilitate infection and nutrient uptake. This study investigated the xylanolytic system of Fusarium proliferatum PSA-3, a strain isolated from mango leaves showing dark spot symptoms. [...] Read more.
Xylanolytic enzymes of the Fusarium species are closely associated with pathogenesis, where they soften plant cell walls to facilitate infection and nutrient uptake. This study investigated the xylanolytic system of Fusarium proliferatum PSA-3, a strain isolated from mango leaves showing dark spot symptoms. When cultivated on rice straw under solid-state fermentation, PSA-3 produced high xylanase activity against rye arabinoxylan (50.2 U) and beechwood xylan (56.8 U). Partial purification by ion-exchange and gel-filtration chromatography yielded a large xylanase aggregate (158 kDa), which appeared as a smear at the top of the gel under native conditions. Mild denaturation resolved the aggregate into at least four active proteins of ~25, 35, 48, and 63 kDa, indicating that multiple xylanases assemble into a functional aggregate. The aggregate retained activity across pH 4.0–8.0, with an optimum at pH 5.0 and 50 °C, and was resistant to Ni2+, Fe2+, Co2+, and β-mercaptoethanol, but inhibited by SDS. Hydrolysis of xylo-oligosaccharides (DP 2–6), purified xylans, and plant-derived xylans confirmed predominantly endo-type action with debranching activity toward A2XX and A2,3XX. These findings reveal a natural xylanase aggregate in F. proliferatum, providing a potential mechanism for efficient degradation of arabinoxylan-rich cell walls and offering targets for antifungal strategies and biotechnological applications. Full article
(This article belongs to the Special Issue 15th Anniversary of Catalysts: The Future of Enzyme Biocatalysis)
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Article
Identification and Genetic Characterization of a Strain of African Horse Sickness Virus Serotype 1 and Its Safety Evaluation in a Mouse Model
by Min Zhang, Xue-Feng Wang, Si-Fan Guo, Lei Wang, Bo-Fan Fu, Jing-Wen Wang, Ya-Fen Song, Xiao-Yue Yang, Si-Yuan Hao, Qian-Yi Zhang, Bing Zhang and Cheng-Huai Yang
Microorganisms 2025, 13(10), 2314; https://doi.org/10.3390/microorganisms13102314 - 6 Oct 2025
Cited by 1 | Viewed by 751
Abstract
African horse sickness (AHS) is an arthropod-borne, severe equid disease caused by African horse sickness virus (AHSV). AHSV has high mortality and is endemic to sub-Saharan Africa. It has been classified into nine distinct serotypes (AHSV-1 to AHSV-9) based on VP2 immunogenicity. The [...] Read more.
African horse sickness (AHS) is an arthropod-borne, severe equid disease caused by African horse sickness virus (AHSV). AHSV has high mortality and is endemic to sub-Saharan Africa. It has been classified into nine distinct serotypes (AHSV-1 to AHSV-9) based on VP2 immunogenicity. The AHS outbreak in Thailand in 2020, caused by AHSV-1, marked the first occurrence of this disease in Southeast Asia. It posed a substantial threat to the security of the equine industry in the nations across the region. To ensure the emergency reserve for AHS prevention and control, the AHSV strain imported to China from abroad over 60 years ago was characterized in this study. The strain was passaged in mice and then blind-passaged in Vero cells. The plaque purification method was then used to purify the strain and obtain its cell-adapted version, named AHSV/C. Neutralization tests confirmed that the virus belongs to AHSV-1. Whole-genome sequencing revealed that AHSV/C was highly homologous to AHSV-1 isolate 1180, with over 95% homology of major antigenic protein VP2, as compared to other AHSV-1 strains, including the prevalent strain in Thailand. In the mouse models, AHSV/C exhibited no clinical signs or histopathological lesions, suggesting low virulence and safety. This research for the first time characterized the in vitro growth characteristics and viral subtypes of the AHSV in China, determined its complete whole-genome sequence, and evaluated its safety using a mouse model. It provides crucial experimental materials and scientific foundations for the development of diagnostic methods and vaccines against AHSV-1. Full article
(This article belongs to the Section Veterinary Microbiology)
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