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19 pages, 1866 KB  
Article
Prophylactic Protection Against Salmonella typhimurium Infection by Single-Atom Zinc Catalysts
by Ling Teng, Hesheng Pan, Zhongwei Chen, Junfeng Sun, Yanwen Zhang, Changting Li, Zhe Pei, Chunxia Ma, Yu Gong, Huili Bai, Leping Wang, Yan Huang, Jing Wang, Chao Zhao, Xian Li, Yangyan Yin, Yingyi Wei and Hao Peng
Nanomaterials 2026, 16(9), 562; https://doi.org/10.3390/nano16090562 - 2 May 2026
Abstract
Zinc oxide promotes poultry growth, but it tends to agglomerate. This necessitates high doses and leads to environmental contamination from unabsorbed, excreted zinc. Undigested zinc is excreted and can enter the food chain, increasing the probability of zinc residues in edible poultry tissues [...] Read more.
Zinc oxide promotes poultry growth, but it tends to agglomerate. This necessitates high doses and leads to environmental contamination from unabsorbed, excreted zinc. Undigested zinc is excreted and can enter the food chain, increasing the probability of zinc residues in edible poultry tissues (muscle, liver, and eggs) and raising concerns for consumer safety. MOF-supported single-atom zinc catalysts (SAC) resolve agglomeration by atomic anchoring, enhancing bioavailability. High-temperature/high-pressure fixation of Zn2+ surfaces was confirmed by XRD, while FESEM revealed the corresponding surface morphology, collectively verifying SAC formation. SAC exhibited potent antimicrobial efficacy against key pathogens such as Salmonella typhimurium, Escherichia coli, and Staphylococcus aureus (MIC of 3.125 mg/mL, MBC of 25 mg/mL). Co-culture experiments further demonstrated that the antibacterial performance of SAC remained stable over a temperature range of 20–80 °C and a pH range of 2–8, thus exhibiting excellent thermal stability and gastrointestinal tolerance. In 7-day-old chicks, SAC alleviated S. typhimurium-induced inflammation, reduced bacterial adherence, upregulated claudin-1, preserved gut homeostasis, ameliorated tissue lesions, and increased the abundance of Lactobacillus in the cecum, demonstrating promising potential for poultry infection control. Full article
(This article belongs to the Topic Nano-Enabled Innovations in Agriculture)
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18 pages, 1935 KB  
Article
The Effect of Pellet Diameter on the Growth Performance, Nutrient Digestibility, and Intestinal Health of Piglets During the Creep Feeding Stage
by Lingao Kong, Fangxing Ou, Shuang Dong, Nan Zhang and Yongxi Ma
Animals 2026, 16(8), 1260; https://doi.org/10.3390/ani16081260 - 20 Apr 2026
Viewed by 245
Abstract
This experiment evaluated the effects of pellet diameter on growth performance and intestinal health of piglets during the creep feeding stage. A total of 144 7-day-old suckling piglets (body weight of 2.2 ± 0.3 kg) were randomly assigned to four groups and fed [...] Read more.
This experiment evaluated the effects of pellet diameter on growth performance and intestinal health of piglets during the creep feeding stage. A total of 144 7-day-old suckling piglets (body weight of 2.2 ± 0.3 kg) were randomly assigned to four groups and fed the same formula as meal feed and pellets of 2 mm, 4 mm, and 8 mm in diameter, respectively. Each treatment consisted of six replicates of six piglets. The trial was divided into two phases by weaning time: 7–21 days (breast milk + creep feed) and 21–35 days (creep feed only). After the feeding trial, piglets from the meal feed group and the 8 mm pellet group were selected for slaughter and sampling. The results showed that before weaning, average daily feed intake (ADFI) increased significantly with increasing pellet diameter (p < 0.001). Post-weaning, piglets fed 8 mm pellets presented significantly higher final body weight (FBW) and average daily gain (ADG) than those in the meal group (p < 0.05). Apparent nutrient digestibility (ATTD) in pellet groups was significantly higher than that in the meal feed group and rose with increasing pellet diameter (p < 0.001). The organ indices of the stomach and large intestine in the 8 mm group of piglets were significantly lower than those of the meal group. The jejunal villus height (VH) in the 8 mm group showed a trend toward an increase (p = 0.066), and the ileal crypt depth (CD) was significantly lower (p = 0.004), with significantly higher digestive enzyme activities in the jejunum and ileum (p < 0.05). In the 8 mm group, the relative abundances of Bacteroidetes in the jejunum and Actinobacteriota in the cecum and colon increased, while those of Pseudomonadota decreased; jejunal microbial relative richness increased significantly, while the ileal microbial operational taxonomic unit (OTU) richness decreased obviously. In conclusion, pellets improved the growth performance of creep feeding piglets. Compared with meal, 8 mm pellets can significantly enhance intestinal health level and nutrient digestion and absorption capacity by optimizing intestinal morphology, boosting digestive enzyme activities, and improving flora structure. Full article
(This article belongs to the Section Animal Nutrition)
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17 pages, 2434 KB  
Article
The Effects of Breeding Methods on Cecal Microflora and Production Traits of Yimeng Black Goats
by Yan Yang, Fukuan Li, Chenhong Zhang, Fuxia Li, Meiying Song, Shenjin Lv and Zhennan Wang
Animals 2026, 16(8), 1156; https://doi.org/10.3390/ani16081156 - 10 Apr 2026
Viewed by 308
Abstract
This study investigated the effects of different breeding methods on the cecal microbiota and production traits of Yimeng Black Goats (YBGs). Twenty-seven 3-month-old male YBGs were assigned to three groups (n = 9 each): total mixed ration once daily (A), concentrate in [...] Read more.
This study investigated the effects of different breeding methods on the cecal microbiota and production traits of Yimeng Black Goats (YBGs). Twenty-seven 3-month-old male YBGs were assigned to three groups (n = 9 each): total mixed ration once daily (A), concentrate in the morning and roughage in the afternoon (B), or grazing with supplementary feeding (C). Cecal bacterial communities were analyzed via 16S rRNA sequencing, and functional potential was predicted using FAPROTAX. Breeding method significantly altered microbial composition (p < 0.05). Beta diversity was highest in Group C, while alpha diversity remained similar across groups. Bacteroidetes, Firmicutes, and Proteobacteria were dominant; Proteobacteria were most abundant in Group A. At the genus level, relative abundances of nine taxa, including Lactobacillus and Fusobacterium, differed significantly (p < 0.05). At the species level, including Lactobacillus mucosae, Bacteroides massiliensis and Alistipes finegoldii, differed significantly (p < 0.05). Chemoheterotrophy and fermentation functions were most enriched, particularly in Group C. Total weight gain was highest in Group A and lowest in Group C (p < 0.05), while carcass rate showed no significant differences (p > 0.05). Correlation analysis revealed that Proteobacteria, Fusobacteria, and Euryarchaeota as the key phylum, and Bacteroides, Tyzzerella, Fusobacterium, unidentified_Prevotellaceae, Methanovrevibacter and Faecalibacterium as the key genera were influencing the production traits of YBGs. These findings highlight the adaptive responses of the cecal microbiota to breeding methods and their potential links to host performance. Full article
(This article belongs to the Section Small Ruminants)
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28 pages, 8980 KB  
Article
Investigation of the Effects of Postbiotics Obtained from Pediococcus acidilactici on Specific Biomarker Expressions in Intestinal Tissue
by Ismail Demircioğlu, Muhammet Bahaeddin Dörtbudak, Funda Aksünger Karaavci, Mehmet Emin Aydemir, Muhammed Demircioğlu, Aydın Genç, Ayşegül Demircioğlu, Güven Güngör and Alessandro Di Cerbo
Foods 2026, 15(7), 1267; https://doi.org/10.3390/foods15071267 - 7 Apr 2026
Viewed by 500
Abstract
The intestinal mucosal barrier is a layered structure comprising fundamental components that play important roles in regulating paracellular permeability. Disruption of intestinal barrier homeostasis predisposes to infections, mucosal damage, and metabolic and allergic diseases. To provide protection against potential damage to the intestinal [...] Read more.
The intestinal mucosal barrier is a layered structure comprising fundamental components that play important roles in regulating paracellular permeability. Disruption of intestinal barrier homeostasis predisposes to infections, mucosal damage, and metabolic and allergic diseases. To provide protection against potential damage to the intestinal mucosa, agents such as prebiotics and probiotics are recommended due to their ability to secrete components and metabolites (e.g., bacteriocins, organic acids, enzymes) that can exert beneficial biological effects. The aim of this study is to comprehensively investigate the effects of a postbiotic derived from Pediococcus acidilactici on healthy rat intestinal tissue. A total of 78 Wistar Albino rats were used in this study. Following compositional analysis of the postbiotic, the animals were administered the postbiotic orally via gavage for different durations (7, 14, 21, 28 days) and at different doses (250 mg/Kg, 500 mg/Kg, 1000 mg/Kg). Characterization of the produced postbiotic revealed a diverse spectrum of biologically active compounds, including organic acids, phenolics, and volatile compounds. Histopathological examination of intestinal sections (duodenum, jejunum, ileum, cecum, colon, and rectum) showed no pathological lesions in any of the experimental groups. Conversely, immunohistochemical analysis revealed that the postbiotic increased the expression of CLDN3, OCLN, ZO1, AQP4, and AQP8, proteins involved in intestinal permeability and fluid transport, in a dose-dependent manner. These results highlight the potential of Pediococcus acidilactici as a supportive agent in a range of intestinal pathologies, including major intestinal diseases such as Crohn’s disease, ulcerative colitis, and inflammatory bowel disease (IBD). Full article
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12 pages, 1885 KB  
Case Report
Cutaneous Manifestations as a Sentinel of Colorectal Cancer: A Case Report
by Bárbara Marinho, Glória Velho and Marisa D. Santos
J. Clin. Med. 2026, 15(7), 2789; https://doi.org/10.3390/jcm15072789 - 7 Apr 2026
Viewed by 370
Abstract
Erythema gyratum repens (EGR) is a rare figurate erythema strongly associated with internal malignancy and recognized as one of the most specific cutaneous paraneoplastic syndromes. Its recognition is clinically important, as it frequently precedes the diagnosis of an underlying neoplasm. We report the [...] Read more.
Erythema gyratum repens (EGR) is a rare figurate erythema strongly associated with internal malignancy and recognized as one of the most specific cutaneous paraneoplastic syndromes. Its recognition is clinically important, as it frequently precedes the diagnosis of an underlying neoplasm. We report the case of an 80-year-old woman who presented to the emergency department with a rapidly progressive, intensely pruritic eruption displaying a characteristic concentric “wood-grain” pattern. Laboratory evaluation revealed iron-deficiency anemia. Contrast-enhanced computed tomography identified a right-sided colonic mass, and colonoscopy with biopsy confirmed adenocarcinoma of the cecum. The patient underwent elective laparoscopic right hemicolectomy with complete tumor resection (pT3N0, microsatellite stable). Following surgery, the cutaneous lesions resolved completely and did not recur during follow-up. This case highlights erythema gyratum repens as a clinically relevant early marker of colorectal cancer and emphasizes the importance of prompt recognition of this distinctive dermatosis to trigger urgent and comprehensive malignancy screening, enabling timely diagnosis and definitive treatment. Full article
(This article belongs to the Section General Surgery)
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17 pages, 6200 KB  
Article
Environmental Altitude and Host Genetics Shape Divergent Microbiota and a Conserved Resistome in Porcine Intestinal Niches
by Renhao Lai, Zhuomacairang Wang, Pengliang Liu, Jiayin Tong, Zulfiqar Ahmed, Richeng Cui, Yiren Gu and Gan Luo
Microorganisms 2026, 14(4), 832; https://doi.org/10.3390/microorganisms14040832 - 6 Apr 2026
Viewed by 350
Abstract
Environmental stressors and host genetics influence gut microbiota and antimicrobial resistance, but their combined effects across intestinal niches remain poorly unexplored. We conducted a metagenomic analysis of 60 jejunal and cecal samples from 30 native Chinese pigs across three altitudes (500 m, 1400 [...] Read more.
Environmental stressors and host genetics influence gut microbiota and antimicrobial resistance, but their combined effects across intestinal niches remain poorly unexplored. We conducted a metagenomic analysis of 60 jejunal and cecal samples from 30 native Chinese pigs across three altitudes (500 m, 1400 m, and 3850 m). The aim was to disentangle the interactive impacts of altitude, breed, and intestinal site on microbiome structure and antibiotic resistome dynamics. The cecal microbiota was taxonomically conserved and strongly associated with breed. Conversely, while jejunal communities exhibited structural variations among the sampled cohorts, differences in alpha diversity (Shannon index, p < 0.01) appeared to be primarily associated with breed differences rather than an independent altitudinal effect. High-altitude Tibetan pigs showed an enrichment of Bifidobacterium and Pseudomonas, which may be linked to hypoxia adaptation. Despite a shared core resistome (88 ARG types), the cecum harbored significantly higher ARG abundance than the jejunum within-breed comparisons of Tibetan pigs across altitudes; this revealed stable ARG profiles (p > 0.05) suggesting that, although some descriptive differences were observed, the independent effect of altitude weakens when the genetic effect is taken into account. Furthermore, carbohydrate-active enzymes (e.g., CBM13, GH33) correlated positively with ARG abundance. In conclusion, the jejunum appears to act as an environmentally responsive niche, while the cecum exhibits a higher ARG abundance that is closely associated with the host breed. Full article
(This article belongs to the Section Gut Microbiota)
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20 pages, 746 KB  
Article
Evaluation of the Hindgut Microbiota and Volatile Fatty Acid Profile of Steers Fed Finishing Feedlot Ration Supplemented with or Without Calcium Gluconate
by Osman Y. Koyun, Evann E. Rowland, Jeferson M. Lourenco, Kenneth E. Griswold, Joseph J. Baloyi, Francis L. Fluharty, T. Dean Pringle, Alexander M. Stelzleni, R. Lawton Stewart and Todd R. Callaway
Microorganisms 2026, 14(4), 802; https://doi.org/10.3390/microorganisms14040802 - 1 Apr 2026
Viewed by 404
Abstract
Growing Angus steers (n = 20) were blocked by weight and randomly assigned to one of two treatment groups: Control group (CON, n = 10) fed a feedlot ration ad libitum, or a ruminally protected hydrogenated fat-embedded calcium gluconate (HFCG) treatment group (HFCG, [...] Read more.
Growing Angus steers (n = 20) were blocked by weight and randomly assigned to one of two treatment groups: Control group (CON, n = 10) fed a feedlot ration ad libitum, or a ruminally protected hydrogenated fat-embedded calcium gluconate (HFCG) treatment group (HFCG, n = 10), which was fed the control ration top-dressed at 16 g/head/day for 55 days. During the slaughter process, digesta samples were collected from the cecum, colon, and rectum. Acetate concentrations were greater in the cecal and rectal digesta of steers (p ≤ 0.05) in the HFCG treatment group. Propionate concentrations were greater in the cecal, colonic, and rectal (p ≤ 0.05) digesta of steers in the HFCG treatment group. Butyrate concentrations were greater (p = 0.098) in the colon digesta of steers in the HFCG treatment group; however, they were not different in the cecal and rectal digesta. To determine the microbial composition within each section of the hindgut, DNA was extracted, and 16S rRNA gene sequencing was performed. Data were analyzed using a General Linear Model with dietary treatment as the main effect. Species richness in the cecum, colon, and rectum was not different between treatments. Erysipelotrichaceae, Peptostreptococcaceae, and Atopobiaceae abundances were increased (p ≤ 0.05) in the cecal bacterial community of steers in the HFCG group, while a significant decrease (p ≤ 0.05) in Rikenellaceae and Muribaculaceae abundances was recorded within the same bacterial community. In the colon bacterial community of steers in the HFCG group, Ruminococcaceae and Muribaculaceae abundances were elevated (p ≤ 0.05), while there was a reduction (p ≤ 0.05) in Lachnospiraceae, Erysipelotrichaceae, Atopobiaceae, and Peptostreptococcaceae abundances. Paeniclostridium, Romboutsia, and Turicibacter abundances were increased (p ≤ 0.05) in the cecal bacterial community of steers in the HFCG group, while there was a decrease (p ≤ 0.05) in Rikenellaceae_RC9 _gut_group abundance within the same bacterial community. In the colon microbiota of steers in the HFCG group, Turicibacter abundance was decreased (p ≤ 0.05). Supplementing growing steers with HFCG impacted some members of the bacterial populations, which have important roles in gut homeostasis and health, along with the formation of beneficial end-products in the gastrointestinal tract. Full article
(This article belongs to the Special Issue Advances in Host-Gut Microbiota)
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15 pages, 2863 KB  
Article
Effect of Zearalenone on Microbial Spatial Differences in the Chyme and Intestinal Mucosa of Piglets
by Jiaqi Shi, Kejie Gao, Wenjing Wang, Shengjie Shi, Shuzhen Jiang and Lijie Yang
Toxins 2026, 18(4), 161; https://doi.org/10.3390/toxins18040161 - 27 Mar 2026
Viewed by 524
Abstract
Zearalenone (ZEN) is a widely distributed estrogenic mycotoxin that compromises intestinal health in pigs, but its spatial difference ZEN and niche-specific regulatory effects on the intestinal microbiota remain largely unelucidated. In this study, 12 healthy three-way crossbred weaned piglets (Duroc × Landrace × [...] Read more.
Zearalenone (ZEN) is a widely distributed estrogenic mycotoxin that compromises intestinal health in pigs, but its spatial difference ZEN and niche-specific regulatory effects on the intestinal microbiota remain largely unelucidated. In this study, 12 healthy three-way crossbred weaned piglets (Duroc × Landrace × Yorkshire) were randomly divided into two treatments. The control group (CON) was fed with the basal diet, and the treatment group (ZEN) was supplemented with 1.5 mg ZEA/kg of the basal diet for 28 days. Chyme and mucosal microorganisms in the duodenum, jejunum, ileum, colon and cecum were profiled by using 16S rDNA sequencing. The results indicated that ZEN significantly reduced the α-diversity of ileal chyme, while the abnormal increase in α-diversity of ileal and cecal mucosa represented a pathological signature of intestinal mucosal barrier damage induced by ZEN, which was detrimental to intestinal health. β-Diversity analysis revealed ZEN altered the microbial community composition of the cecal chyme. LEfSe analysis revealed gut segment-specific and niche-specific biomarker taxa among the groups, and functional prediction further indicated that ZEN exposure significantly perturbed key metabolic pathways: it downregulated nicotinate and nicotinamide metabolism as well as the citrate cycle in ileal chyme and upregulated the pentose and glucuronate interconversions pathway in cecal chyme. Collectively, this study demonstrated the effects of ZEN on the intestinal microbiota across spatial difference and ecological niches in weaned piglets, providing a basis for elucidating the microecological mechanisms underlying ZEN-induced intestinal injury in pigs. Full article
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27 pages, 11931 KB  
Article
Effects of Replacing Soybean Meal with Different Proportions of Black Soldier Fly Larvae Meal on Antioxidant Indicators, Immune System, and Gut Health of Xichuan Black-Bone Chickens
by Xiaowen Geng, Luyu Yang, Yingdong Hou, Zhiyuan Zhang, Fumin He, Ruilong Xu, Pengwei Zhang, Ruirui Jiang, Wenting Li, Guirong Sun, Xiaojun Liu, Ruili Han, Xiangtao Kang, Yadong Tian and Donghua Li
Antioxidants 2026, 15(4), 408; https://doi.org/10.3390/antiox15040408 - 24 Mar 2026
Viewed by 433
Abstract
This study aimed to investigate the underlying mechanisms by which replacing soybean meal with different proportions of black soldier fly (BSF) larvae meal affects the antioxidant capacity, immune function, and intestinal health in Xichuan black-bone chickens. After feeding the diets with 0.0%, 3.9%, [...] Read more.
This study aimed to investigate the underlying mechanisms by which replacing soybean meal with different proportions of black soldier fly (BSF) larvae meal affects the antioxidant capacity, immune function, and intestinal health in Xichuan black-bone chickens. After feeding the diets with 0.0%, 3.9%, 7.8%, 11.7%, and 15.6% BSF powder for 56 days, twelve chickens were sampled from each group. The optimal addition group was determined. Compared with the control group, adding 11.7% BSF significantly increased serum T-AOC, SOD, IgA, IgM, IL-4, and IL-10 concentrations, while markedly reducing IL-1β, TNF-α, and IL-6 (p < 0.05) and improving spleen morphology. Adding 11.7% BSF significantly increased the duodenal villus-to-crypt ratio (V/C) and markedly elevated the ileal V/C (p < 0.05), and it significantly increased gene expression levels of duodenal Claudin-1, Occludin, and E-cadherin, jejunal Claudin-1, and ileal Claudin-1, Occludin, and E-cadherin (p < 0.05). Compared with the control group, the 11.7% addition group exhibited significant alterations in caecal microbiota composition (p < 0.05), with 10 distinct bacterial genera identified at the genus level. A total of 424 differentially expressed metabolites were identified. Correlation analyses revealed that adding 11.7% BSF may enhance immune function by regulating intestinal metabolites such as isovaleric acid, inosine, and tazarotenic acid via Akkermansia, Sphaerochaeta, and Blautia in the cecum. It may also improve gut health by modulating inosine through Sphaerochaeta and Blautia. This trial provides feasibility evidence for substituting soybean meal with BSF meal, offering scientific support for sustainable development in animal husbandry. Full article
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22 pages, 7223 KB  
Article
Composite Probiotic Fermented Feed Enhances Growth Performance and Intestinal Health in Weaned Piglets by Modulating the Gut Microbiome and Metabolome
by Zifan Wang, Zhimin Lin, Binbin Lin, Song Peng, Yijuan Xu, Xiuzhen Wang, Huini Wu, Bilin Xie, Bihong Chen, Mengshi Zhao, Fengqiang Lin, Tiecheng Sun and Zhaolong Li
Animals 2026, 16(6), 972; https://doi.org/10.3390/ani16060972 - 20 Mar 2026
Viewed by 532
Abstract
This study investigated the effects of compound microbial fermented feed on the growth performance, intestinal architecture, microbiota composition, and metabolic profiles of weaned piglets. Fifty-four weaned piglets were randomly allocated to three dietary treatment groups: a control group (basal diet), a 50% fermented [...] Read more.
This study investigated the effects of compound microbial fermented feed on the growth performance, intestinal architecture, microbiota composition, and metabolic profiles of weaned piglets. Fifty-four weaned piglets were randomly allocated to three dietary treatment groups: a control group (basal diet), a 50% fermented feed group (T1), and a 100% fermented feed group (T2), for a 33-day feeding period. The results indicated that both T1 and T2 diets significantly improved final body weight and average daily gain (ADG), while decreasing the feed-to-gain ratio (F/G) compared with the control (p < 0.05). Morphological assessment revealed that the T1 group significantly elevated the villus height-to-crypt depth ratio in the jejunum and increased the density of goblet cells in the cecum and colon (p < 0.05). Multi-omics analysis indicated that fermented feed significantly reshaped the gut microbiota structure (p < 0.05), characterized by the enrichment of beneficial taxa, including Oscillospiraceae and Lachnospiraceae (p < 0.05), and the modulation of nucleotide and bile acid metabolism. Furthermore, correlation analysis identified significant linkages between the abundance of jejunal Oscillospiraceae and colonic/cecal Lactobacillus with growth performance, intestinal morphology, and key metabolites. This finding systematically elucidates the mechanisms by which compound microbial fermented feed promotes growth and intestinal health in weaned piglets via microbiota-mediated pathways, offering a robust scientific framework for the development of antibiotic-free nutritional strategies. Full article
(This article belongs to the Section Pigs)
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12 pages, 398 KB  
Article
A Swedish Haplotype GWAS in Familial and Sporadic Site-Specific Colorectal Cancer
by Litika Vermani, Shabane Barot and Annika Lindblom
Int. J. Mol. Sci. 2026, 27(6), 2758; https://doi.org/10.3390/ijms27062758 - 18 Mar 2026
Viewed by 358
Abstract
Genetic variants specific to anatomical subsites of colorectal cancer are known to play a crucial role in its prognosis and treatment. We undertook a haplotype-based genome-wide association study (GWAS) to identify specific genetic risk loci for three sites: cecum, right colorectum, and left [...] Read more.
Genetic variants specific to anatomical subsites of colorectal cancer are known to play a crucial role in its prognosis and treatment. We undertook a haplotype-based genome-wide association study (GWAS) to identify specific genetic risk loci for three sites: cecum, right colorectum, and left colorectum. Six different haplotype GWAS were performed using familial and sporadic colorectal cancer cases with tumors at three different sites. The studies included 2358 CRC cases and 1642 healthy controls. A logistic regression model using PLINK v.1.07 software was employed, and risk loci with a p-value of 5 × 10−8 were considered statistically significant. In total, 29 distinct risk loci were identified in the analyses of familial and sporadic cases of cecal and proximal colon cancer. The results from the analyses of familial and sporadic left-sided colorectal cancer did not meet the strict criteria for significance. Among the loci that were associated with cecal cancer, 14 were familial, and seven were sporadic. Among the other right-sided colon cancer loci, six were familial, and two were sporadic. Coding genes were found at 18 of the 29 loci. Our findings of site-specific genetic risk loci support the growing evidence for divergent pathways in familial and sporadic colorectal cancer across different colorectal sites. The data support a model where the rise in proximal tumors, both familial and sporadic, is influenced by genetic risk to a higher degree than that of distal tumors. These findings are important for understanding colorectal carcinogenesis and could, after future studies, lead to new applications in cancer prevention, treatment, and prognosis. Full article
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15 pages, 1599 KB  
Article
Compound Probiotics Alleviate Gut Microbiota Dysbiosis Induced by Heat Stress in Broilers
by Fenghua Li, Panping Sun, Muchun Duan, Xuan Liu and Lihuan Zhang
Animals 2026, 16(5), 823; https://doi.org/10.3390/ani16050823 - 6 Mar 2026
Viewed by 438
Abstract
Heat stress represents a key environmental challenge in poultry production, markedly impairing broiler health and productivity. This study investigated the association between compound probiotic supplementation and the gut microbial community structure in heat-challenged broilers, analyzing the cecal contents from both groups using 16S [...] Read more.
Heat stress represents a key environmental challenge in poultry production, markedly impairing broiler health and productivity. This study investigated the association between compound probiotic supplementation and the gut microbial community structure in heat-challenged broilers, analyzing the cecal contents from both groups using 16S rDNA amplicon sequencing. Compound probiotic supplementation was associated with changes in alpha diversity and richness of the cecal microbiota, with lower Shannon, Chao1, and ACE indices (p < 0.05). At the phylum level, compound probiotic supplementation significantly increased the relative abundance of Bacteroidota (p < 0.001) while decreasing that of Proteobacteria (p < 0.0001) in the cecum of broilers, whereas the relative abundances of Firmicutes and Verrucomicrobiota showed increasing trends. At the genus level, the relative abundance of Bacteroides (p < 0.0001) was significantly increased in the HP group, whereas Lactobacillus and Fusobacterium exhibited decreasing trends compared with the HS group. LEfSe analysis suggested Verrucomicrobia as a potentially enriched taxon in the HP group. Furthermore, KEGG level 3 functional prediction suggested enrichment of predicted pathways related to starch and sucrose metabolism, as well as amino acid and nucleotide metabolism in the HP group. These findings suggest that compound probiotics are associated with changes in gut microbial composition and predicted functions in heat-stressed broilers, providing preliminary, exploratory insights into their potential associations under heat stress. Full article
(This article belongs to the Section Poultry)
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25 pages, 1571 KB  
Article
Environmental Persistence and Genotypic and Phenotypic Characterization of Salmonella Minnesota in Poultry Slaughterhouses
by Larissa Justino, Ana Angelita Sampaio Baptista, Rafael Humberto de Carvalho, Tiago Casella, Evelin Lurie Sano, João Vitor da Silva Costa, Arthur Roberto da Costa, Maísa Fabiana Menck-Costa, Maria Fernanda Marques Pilli, Ana Carolina Bergamo Benteo, Marielen de Souza, Alceu Kazuo Hirata, Carlos Adelino Dalle Mole, Rafael Mesalla Costalonga Andrade, Raphael Lucio Andreatti Filho and Alexandre Oba
Pathogens 2026, 15(3), 247; https://doi.org/10.3390/pathogens15030247 - 26 Feb 2026
Viewed by 744
Abstract
Salmonella Minnesota (SM) is considered an emerging serovar, adapted to the poultry production chain, frequently associated with antimicrobial resistance, biofilm formation, and environmental persistence. This study aimed to characterize SM isolates from a poultry slaughterhouse regarding phenotypic and genotypic profiles of antimicrobial resistance, [...] Read more.
Salmonella Minnesota (SM) is considered an emerging serovar, adapted to the poultry production chain, frequently associated with antimicrobial resistance, biofilm formation, and environmental persistence. This study aimed to characterize SM isolates from a poultry slaughterhouse regarding phenotypic and genotypic profiles of antimicrobial resistance, biofilm-forming capacity, thermal tolerance, genotypic virulence profile, and clonal relatedness. Strains obtained from carcasses (n = 26), cecal contents (n = 25), and chiller water (n = 11) from the slaughterhouse were evaluated. A high frequency of resistance to β-lactams, multidrug-resistant phenotypes, and extended-spectrum β-lactamase-producing isolates were observed. All isolates harbored genes associated with virulence and biofilm formation (invA, csgD, and adrA). Biofilm formation was influenced by temperature, with greater intensity at refrigeration temperatures, especially on stainless steel surfaces. In thermal tolerance assays, a negative correlation between temperature and bacterial viability was observed. Genetically related lineages circulating among cecum, carcass, and slaughterhouse chiller water over time were observed. These findings indicate that the persistence of SM in poultry slaughterhouses is sustained by the interaction between antimicrobial resistance, adaptive capacity associated with biofilm formation, and the circulation of genetically related lineages, representing a relevant challenge for food safety and public health. Full article
(This article belongs to the Special Issue Salmonella: A Global Health Threat and Food Safety Challenge)
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12 pages, 1204 KB  
Article
16S rRNA Gene and Metagenomic Analysis Revealed an Association Between Cecal Microbiota and Pork Umami
by Zhijian Xu, Mei Liang, Junjie Li, Bo Song, Meimei Zhang, Hui Jiang, Jianmin Chai, Jiangchao Zhao, Feilong Deng and Ying Li
Animals 2026, 16(4), 679; https://doi.org/10.3390/ani16040679 - 21 Feb 2026
Viewed by 535
Abstract
Umami is a key determinant of pork flavor, but the association between the intestinal microbial community and umami differences remains unclear. Here, we used the taste-sensing electronic tongue system to divide the Duroc × Landrace × Yorkshire pigs into high, medium and low [...] Read more.
Umami is a key determinant of pork flavor, but the association between the intestinal microbial community and umami differences remains unclear. Here, we used the taste-sensing electronic tongue system to divide the Duroc × Landrace × Yorkshire pigs into high, medium and low groups. We combined 16S rRNA gene and shotgun metagenomic sequencing to study the differences in the microbial community composition and functional genes. The results showed that the microorganisms in the cecum of different groups had a similar core microbial community. The Shannon diversity analysis showed that there were no significant differences among the different groups. The Bray–Curtis distance indicated that there were differences in the bacterial communities between the high umami group and the other two groups. The LEfSe analysis and Spearman correlation analysis revealed that the uncultured species CAG-632 sp900539185 maintained a high abundance in the high umami group and was significantly correlated with umami. Metagenomic functional analysis revealed distinct functional signatures among umami groups, with enrichment of genes related to carbohydrate transport and metabolism, butanoate and other short-chain fatty acid pathways, nitrogen utilisation, cell-surface structures, adhesion and RNA metabolism in high umami groups. These research findings indicate that the differences in the delicious flavor of pork are more likely to be associated with specific microbial species and the functional characteristics of the cecal microbial community, rather than the overall situation of the entire microbial community. Full article
(This article belongs to the Section Pigs)
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Article
Intestinal Microbiota and Probiotic Characteristics of Two Indigenous Chicken Breeds (Hotan Black Chicken and Baicheng You Chicken) from the Tarim Basin
by Xufeng Dou, Guodong Zhang, Xiaomei Dong, Chengqian Wang, Wei Dong, Xu’na Ding, Hui’e Wang, Yuxia Mei, Haihong Jiao and Min Ren
Animals 2026, 16(4), 672; https://doi.org/10.3390/ani16040672 - 21 Feb 2026
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Abstract
Drawing on two indigenous chicken breeds that have adapted for centuries to the hyper-arid Tarim Basin, namely the Baicheng You Chicken and Hotan Black Chicken, this study provides a high-resolution map of their gut microbiota across the duodenum, jejunum, ileum and cecum and [...] Read more.
Drawing on two indigenous chicken breeds that have adapted for centuries to the hyper-arid Tarim Basin, namely the Baicheng You Chicken and Hotan Black Chicken, this study provides a high-resolution map of their gut microbiota across the duodenum, jejunum, ileum and cecum and subsequently isolates putative probiotic strains from cecal contents using conventional culture techniques. In the duodenum, Lactobacillus dominated Hotan Black Chicken (43.16%), whereas Ligilactobacillus prevailed in Baicheng You Chicken (37.03%). This segregation persisted in the jejunum, with Lactobacillus accounting for 62.55% of Hotan Black Chicken reads and Ligilactobacillus accounting for 60.76% reads in Baicheng You Chicken. The ileal core of Hotan Black Chicken remained Lactobacillus (50.63%), while Baicheng You Chicken shifted to Enterococcus (32.37%). In the cecum, both breeds converged on the Rikenellaceae RC9 gut group as the single dominant lineage (Hotan Black Chicken, 46.87%; Baicheng You Chicken, 46.23%). At the genus level, Hotan Black Chicken was enriched in Lactobacillus and Ligilactobacillus, whereas Baicheng You Chicken harbored a greater proportion of Enterococcus. Concurrently, eight strains with in vitro probiotic attributes were isolated, four from each breed, identified as Ligilactobacillus salivarius, Limosilactobacillus reuteri, Lactobacillus gallinarum, Enterococcus lactis, Enterococcus faecium, Enterococcus faecalis, and Bacillus velezensis. This study deciphers the intestinal microbiome of two native Tarim Basin chicken breeds, Hotan Black Chicken and Baicheng You Chicken, and mines them for autochthonous probiotic strains. The obtained dataset has established a foundational resource for poultry-related probiotics adapted to extremely arid environments, providing theoretical insights and practical value for poultry nutritionists in water-scarce regions in the future. Full article
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