Search Results (3,473)

Organic dairy farming has expanded rapidly over the past three decades, driven by regulatory reforms, consumer demand, and growing recognition of its environmental, animal welfare, and potential human health benefits. Despite this growth, evidence comparing organic and conventional dairy systems remains fragmented across genetics, phenomics, animal health, and human health outcomes. This review synthesizes current knowledge through the lens of genotype × environment interactions, integrating evidence from four complementary domains: (1) genomic architecture and breeding strategies; (2) phenotypic performance, including milk production and composition, meat quality, nutrition, and reproductive traits; (3) animal health, disease resistance, antimicrobial use, and welfare; and (4) implications for human health. Holstein–Friesian cattle remain the predominant breed in both systems; however, organic production favors animals with greater robustness, longevity, grazing efficiency, and disease resilience. Genetic studies further demonstrate that highly heritable production traits share similar genetic architecture across production systems, whereas health, fertility, longevity, and other low-heritability functional traits exhibit stronger genotype × environment interactions and more system-specific genomic signatures. These findings suggest that breeding strategies developed for high-input conventional systems are unlikely to maximize performance under organic management. Collectively, the evidence supports a shift from selection focused primarily on milk yield toward genomic improvement of robustness, disease resistance, reproductive resilience, grazing adaptation, and lifetime productivity. We propose Genomically Optimized Organic Dairy (GOOD) as an emerging framework that integrates genomic selection, precision phenotyping, health monitoring, and environmental adaptation to develop dairy cattle better suited to organic production. Full article

Context: Forage bermudagrass (Cynodon dactylon) is widely used in warm-season livestock production systems because of its high productivity and adaptability. However, systematic evaluation of forage-type germplasm remains limited, restricting the identification of superior breeding materials. Aims: This study aimed to evaluate phenotypic variation, identify key yield-related traits, and identify high-performing forage bermudagrass germplasm with contrasting interannual phenotypic responses derived from a ‘Wrangler’ × ‘CD-21’ hybrid population. Methods: Two evaluation populations were established. A single-genotype population of 621 individuals was used to assess plant and canopy height variation, whereas 16 representative entries were evaluated for biomass yield and major agronomic traits during 2024–2025. Frequency distribution, principal component, correlation, and path analyses were conducted. Key results: Stem height and canopy height showed unimodal, approximately normal distributions, indicating continuous phenotypic variation and supporting their characterization as quantitative traits. Biomass yield was positively associated with stem height (r = 0.79), canopy height (r = 0.82), and internode length (r = 0.63). Path analysis indicated that stem height had the largest estimated direct effect (β = 0.45) on biomass yield within the proposed path model. Multivariate analyses revealed distinct phenotypic differences among entries and years, allowing classification into high-performing, environmentally responsive, and leaf-structure efficient groups. Conclusions: Stem height, canopy height, and internode length were identified as key traits associated with forage biomass production. Integrating multivariate and path analyses effectively differentiated forage bermudagrass germplasm based on yield performance and agronomic traits. Implications: The identified germplasm and trait relationships provide useful information for further breeding evaluation and selection decisions and support the development of improved forage bermudagrass cultivars. Full article

Enterocytozoon bieneusi is a major zoonotic pathogen causing human microsporidiosis, with small ruminants serving as crucial reservoir hosts. Hu sheep and local goats are pillar livestock breeds in Zhejiang Province, yet no parallel comparative epidemiological data on E. bieneusi exist for sympatric small ruminants in southern Zhejiang, and the infection status in Hu sheep remains entirely uncharacterized. Here, a total of 297 fecal samples (159 Hu sheep, 138 goats) were collected from four administrative regions in southern Zhejiang from 2021 to 2023 and screened via nested PCR targeting the ribosomal internal transcribed spacer (ITS) region of the E. bieneusi genome. Overall, the total E. bieneusi prevalence reached 18.18%, and Hu sheep exhibited a significantly higher infection rate (24.53%, 39/159) than sympatric goats (10.87%, 15/138; χ² = 9.27, p = 0.002). Obvious geographical and age-dependent disparities were observed in Hu sheep, with pre-weaning lambs (<3 months) showing the highest prevalence (60.42%), while adult sheep (>1 year) had the lowest rate (4.48%). No significant age or regional differences were detected in goats. Five genotypes were identified from Hu sheep: CM7 (n = 25), BEB6 (n = 10), CHG1 (n = 2), Type IV (n = 1), and CHG5 (n = 1). Five genotypes were detected from goats: CHG1 (n = 9), BEB6 (n = 3), Type IV (n = 1), CHG3 (n = 1), and CYG-2 (n = 1). BEB6, Type IV, and CHG1 were shared by both hosts. All genotypes belonged to zoonotic Group 1 and Group 2. This study provides the first systematic parallel survey of E. bieneusi in sympatric Hu sheep and goats in eastern China. It identifies distinct host-specific infection patterns potentially associated with divergent rearing systems, provides molecular data consistent with potential inter-species circulation and shared environmental exposure, and highlights the need for breed-tailored biosecurity strategies within a One Health framework. Full article

Cadmium (Cd) is a highly toxic non-essential heavy metal that severely impairs plant growth, compromises crop yield and quality, and threatens food safety and human health. Jasmonic acid (JA) and salicylic acid (SA) are well-characterized endogenous phytohormones that serve as central regulators in modulating plant adaptive responses to Cd stress. This review comprehensively synthesizes current knowledge on the involvement of JA and SA in regulating Cd accumulation and tolerance in plants, including their Cd-induced biosynthetic dynamics and signaling transduction pathways, as well as their functions in restricting Cd uptake and translocation, modulating chelation and sequestration, reinforcing antioxidant defense systems and protecting photosynthetic apparatus. Moreover, we analyze the antagonistic and synergistic crosstalk between JA and SA, and discuss how this interplay shapes Cd resilience in plants. Finally, the application potential of JA and SA in developing Cd-safe crops and phytoremediation in Cd-contaminated farmland is explored. This review provides a systematic analysis of the regulatory roles of JA and SA in plant responses to Cd stress, along with an in-depth discussion of their crosstalk. These insights contribute to the rational development of hormone-based breeding strategies for Cd-safe crops and the optimization of agronomic management practices. Full article

Genome-wide association studies (GWASs) have mapped many regions affecting cattle production, health and fertility, yet the lead variant is usually a marker for a linkage-disequilibrium block rather than the molecular lesion. This state-of-the-field review examines how those loci are interpreted at different levels. The literature shows both progress and persistent limits. Colocalization may identify a likely effector transcript without establishing mediation, whereas structural variants missing from SNP-based analyses can account for expression, splicing, or complex-trait signals. Earlier reviews have audited proposed causative variants across cattle and pigs, surveyed causal variants across livestock species, or concentrated on structural variation. Here, these lines of evidence are brought together around a narrower question: Why do cattle complex-trait loci remain resolved at such different biological depths? Coding, regulatory, splicing, and structural examples show where inference is persuasive and where alternatives remain. The evidence is organized as a conceptual landscape, not a validated hierarchy or prescriptive pipeline. The available mechanistic evidence is nevertheless concentrated in commercial taurine, particularly dairy populations, which limits the direct transferability of locus-level conclusions to indicine, African taurine, composite and locally adapted cattle. Priorities include clearer causal terminology, multi-signal and multi-breed analyses, better representation of structural variation, tissue- and cell-state-matched molecular data, native bovine experimental systems and transparent reporting of unresolved explanations. Full article

The use of crossbreeding between dairy and beef breeds has been adopted as a strategy to add value to male calves from dairy systems, improve productive efficiency, and reduce economic and animal welfare concerns. This study evaluated the effects of Holstein × Angus crossbreeding on productive performance, metabolism, ruminal fermentation, nutrient digestibility, carcass characteristics, meat quality, and fatty acid profile during the feedlot finishing phase. Twenty-four uncastrated male cattle (8 Holstein, 8 Angus, and 8 crossbreds) were confined for 130 days and fed an isoenergetic and isonitrogenous diet. No significant differences were observed among breeds for weight gain, dry matter intake, feed efficiency, or nutrient digestibility (p > 0.05). However, Angus and crossbred cattle showed higher carcass yield compared to Holstein cattle (p ≤ 0.05). Angus and crossbred animals presented higher concentrations of total volatile fatty acids, acetate, and propionate in the rumen (p ≤ 0.05). Breed differences were also observed in erythrocyte indices and serum urea concentrations (p ≤ 0.05). Meat from crossbred animals showed superior quality attributes compared to Holstein, including lower ultimate pH, higher lightness, greater water-holding capacity, and an intermediate lipid profile between the parental breeds (p ≤ 0.05). It is concluded that Holstein × Angus crossbreeding improves carcass yield, ruminal fermentation efficiency, and meat quality, without compromising productive performance, representing a viable strategy for adding value to male calves from dairy herds under tropical production conditions. Full article

Maize (Zea mays L.) landraces are rich sources of genetic and nutritional diversity, yet their compositional traits remain undercharacterized compared to modern hybrids. This study compiled and analyzed data from 1554 maize samples—995 landraces and 559 hybrids—evaluated at the CIMMYT Maize Quality Laboratory over more than a decade. Traits assessed included kernel structure, macronutrients, iron, zinc, carotenoids, and anthocyanins. Landraces showed greater variability and higher average concentrations of protein (10.88 vs. 9.92%), iron (17.63 vs. 13.91 mg kg⁻¹), zinc (22.70 vs. 18.98 mg kg⁻¹), and anthocyanins, whereas hybrids, particularly those developed through provitamin A biofortification programs, exhibited higher average provitamin A (3.33 vs. 1.84 µg g⁻¹) and total carotenoid concentrations. Correlations between kernel structural components and nutrient composition highlighted the structural basis of grain quality variation. These findings demonstrate that landraces and hybrids provide complementary nutritional profiles that can jointly support breeding, food innovation, and sustainable food systems. Full article

Lotus corniculatus is a superior leguminous forage with multiple values including forage, ecological, ornamental and medicinal uses. It is also an ideal material for plant bioreactors. As a core technical approach, genetic transformation overcomes the constraints of traditional breeding and facilitates the targeted improvement in stress resistance and agronomic traits in this species. This review summarizes the research progress of the Agrobacterium-mediated genetic transformation of L. corniculatus, focusing on key procedures such as explant selection, strain selection, infection and co-cultivation regimes, basal medium composition, phytohormone regulation, as well as bacteria elimination and transformant screening strategies. We further elaborate on the applications of this transformation system in enhancing tolerance to abiotic stresses (salt, drought and heat), regulating quality-related traits, and developing plant-based vaccine bioreactors. Additionally, this paper critically discusses the major bottlenecks and challenges constraining existing genetic transformation systems in L. corniculatus, and evaluates the prospects for establishing high-efficiency and genetically stable transformation platforms. This review aims to provide theoretical foundations and technical references for germplasm innovation, molecular breeding and comprehensive utilization of L. corniculatus. Full article

Verticillium wilt, caused by Verticillium dahliae, is a major constraint on cotton production. The GASA (Gibberellic Acid-Stimulated in Arabidopsis) proteins are cysteine-rich peptides induced by gibberellin signaling; however, their systemic role in upland cotton (Gossypium hirsutum) resistance to Verticillium wilt remains elusive. Here, we identified 40 GhGASA members from the G. hirsutum genome, which were clustered into three subfamilies. All members possessed a typical gibberellin-regulated domain, and segmental duplication was the primary driver of family expansion. Transcriptomic analyses revealed tissue-specific expression, with high abundance in pistils and roots, and distinct responsive patterns to salt, drought, and cold stresses. Quantitative real-time PCR (qRT-PCR) showed that multiple GhGASA genes were significantly upregulated following V. dahliae inoculation, with transcript levels being much higher in roots and stems than in leaves. Notably, GhGASA17, harboring ethylene-responsive elements, was identified as a key candidate involved in the defense response. Overall, this study provides a comprehensive characterization of the GhGASA gene family, offering a theoretical foundation for understanding its regulatory functions in Verticillium wilt resistance and delivering potential genetic resources for molecular breeding in cotton. Full article

Dwarf cereal cultivars were crucial for the Green Revolution. Dwarfed, lodging-resistant varieties remain essential today, as climate change brings more storms and downpours. In barley, the dwarfing gene HvDEP1 has been widely used in breeding. Although its pleiotropic effects on agronomic traits have been examined, previous studies relied on cultivars developed via random mutagenesis, which carry background mutations that may influence phenotypes. Moreover, its impact on root traits remains underexplored. We used CRISPR/Cas9 to generate precise HvDEP1 mutants and introduce dwarfism into the barley cultivar ‘Maythorpe.’ We assessed the effects on above-ground morphology, yield-related traits, root architecture, biomass via ¹³C labelling, and the root metabolome. HvDEP1 mutations significantly reduced plant height, straw, spike, and awn length, as well as thousand-grain weight. An in-frame mutant showed intermediate height, straw, and awn phenotypes. Belowground, in a root experiment restricted to knockout line #12, specific root length and the length of the finest (0–0.25 mm) roots were reduced, while total root length was lower but not significantly so; (p = 0.062). Root metabolomic profiling detected no genotype-associated differences. These results provide new insights into HvDEP1′s role in both shoot and root systems and demonstrate that precise CRISPR/Cas9-mediated editing can rapidly introduce dwarfism while revealing trade-offs in other agronomic traits. Full article

Background/Objectives: Goat milk is an important source of bioactive lipids, but information on the fatty acid (FA) profiles of indigenous Greek goat breeds under semi-extensive management remains limited. This study aimed to compare the milk FA composition and lipid health indices of Capra prisca, Skopelos, and crossbred goats in Thessaly, Greece, and to evaluate the effect of organic versus conventional semi-extensive production systems. Methods: Thirty bulk-tank milk samples were collected during spring 2025 from eight herds, comprising Capra prisca (n = 10), Skopelos (n = 10), and crossbred goats (n = 10), with 15 samples from each production system. Physicochemical characteristics were determined using an ultrasonic milk analyzer, while FA composition was analyzed by gas chromatography with flame ionization detection (GC–FID). Lipid quality indices, including the Atherogenicity Index (AI) and Thrombogenicity Index (TI), were calculated. Statistical analyses were performed using two-way ANOVA with Benjamini–Hochberg adjustment. Results: Breed significantly affected several individual FAs but not total SFA, MUFA, or UFA concentrations. Capra prisca milk contained higher levels of C4:0, C18:0, and C18:3n6 (pBH ≤ 0.015), whereas Skopelos milk showed higher C16:0 and lower C18:2n6 isomers (pBH ≤ 0.046). Total PUFA and ω-6 concentrations were higher in Capra prisca and crossbred milk than in Skopelos milk (pBH ≤ 0.004). In contrast, total ω-3 concentrations and lipid health indices did not differ significantly among breeds or between production systems (AI = 2.5–2.7; TI = 3.0–3.3; PUFA/SFA = 0.06–0.07; pBH ≥ 0.192). Conclusions: Under semi-extensive management, breed was associated primarily with differences in individual FAs and total ω-6 PUFA concentrations, whereas overall lipid health indices were relatively stable. No significant differences were observed between organic and conventional production systems. These findings provide baseline information on the milk lipid composition of indigenous Greek goat breeds and support further investigation using larger, multi-season datasets. Full article

Oil palm (Elaeis guineensis Jacq.) is a quintessential tropical oilseed crop, whose distribution and yield are significantly constrained by low-temperature stress. This study conducted physiological and proteomic analyses to investigate the early response mechanisms of one-year-old thin-shelled oil palm seedlings exposed to low temperatures of 8 °C for durations of 0, 0.5, 1, 2, 4, and 8 h. The results indicated that low-temperature treatment inhibited chlorophyll accumulation, reduced photosynthetic efficiency, and increased the levels of malondialdehyde (MDA) and soluble sugars. Concurrently, the activities of antioxidant enzymes exhibited a transient increase, suggesting an imbalance in the antioxidant defense system during the later stages of stress. Proteomics results indicate that the core pathways involved are fatty acid degradation and the regulatory pathways for starch and sucrose metabolism. Within these pathways, key proteins such as ACSL (long-chain fatty acid-CoA ligase), paaF (enoyl-CoA hydratase), HADH (3-hydroxyacyl-CoA dehydrogenase), and HADHA (enoyl-CoA hydratase/long-chain 3-hydroxyacyl-CoA dehydrogenase) are identified among 13 differential accumulation protein (DAPs). It is hypothesized that these key proteins work in concert to regulate osmosis, scavenge reactive oxygen species (ROS), stabilize membranes, and supply energy. Through physiological and proteomic analyses, this study identified physiological indicators, key proteins, and regulatory pathways associated with cold tolerance in oil palm, thus providing a theoretical basis for breeding low-temperature-tolerant oil palm varieties. The findings contribute to the development of low-temperature-tolerant oil palm cultivars. Full article

Asian local chickens are often perceived as more palatable than commercial broilers, with stronger taste and longer aftertaste, but the biochemical basis of this eating quality remains unclear. Using Japanese local chicken meat as the main example and other Asian local chicken studies as context, this hypothesis-generating review develops a hypothesis centered on arachidonic acid. The core hypothesis is that higher arachidonic acid content may partly explain why local chicken meat is perceived as more palatable. Available Japanese data show that local chicken meats generally contain higher arachidonic acid proportions than commercial broiler meat. However, higher arachidonic acid content alone cannot explain why the meat is perceived as more palatable. A previously proposed hypothesis links lipid-derived volatile aldehydes to kokumi through activation of the calcium-sensing receptor. This route is treated cautiously here, because volatile aldehydes may be lost during cooking and have not yet been shown to remain in cooked chicken meat at concentrations that influence eating quality. Instead, this review proposes a second validation route. Arachidonic-acid-rich lipid pools generate 4-hydroxy-2-nonenal and related compounds that are less volatile and more likely to remain in edible fractions than short-chain aldehydes. These compounds are introduced here only as plausible downstream oxidation products that may help connect meat lipid composition with kokumi-related or aftertaste-related perception. This review emphasizes production context, meat-quality traits, and sensory evaluation as the primary basis for interpreting fatty-acid differences, with chemical hypotheses presented only as exploratory routes for future validation. Full article

Climate change is increasing the frequency and severity of abiotic stresses, including drought, salinity, waterlogging, and temperature extremes, thereby threatening the productivity and quality of Brassica crops. This review synthesizes recent progress in abiotic stress tolerance from physiological, genetic, epigenetic, and multi-omics perspectives, with an emphasis on how mechanistic discoveries can be translated into breeding decisions. We first outline the signaling hierarchy that links stress perception at the plasma membrane and cell wall interface to Ca²⁺ signaling, MAPK cascades, hormone crosstalk, osmotic adjustment, ROS homeostasis, and metabolic reprogramming. We then examine the genetic architecture of stress tolerance through QTL mapping, GWAS, and functional genomics, highlighting how allopolyploidy, subgenome specialization, homoeologous gene divergence, and alternative splicing create both opportunities and complications for Brassica improvement. We further evaluate how transcriptomic, epigenomic, metabolomic, and microbiome-related data are revealing regulatory complexity but remain underused for prediction and causal inference. Major bottlenecks include the inefficient conversion of association signals into validated functional markers, the descriptive rather than predictive use of multi-omics datasets, limited mechanistic understanding of combined stresses, and insufficient field validation across genetic backgrounds. Finally, we discuss integrated breeding strategies, including marker-assisted selection, genomic selection, genome editing, wild germplasm utilization, microbiome-assisted approaches, and synthetic biology. By connecting stress biology with translational breeding, this review provides a framework for developing climate-resilient Brassica cultivars. Full article

Targeted CSN2 codon-67 genotyping supports A2-oriented breeding and herd management. We compared Kompetitive Allele-Specific PCR (KASP) with a locally implemented gel-based tetra-primer amplification refractory mutation system PCR (T-ARMS PCR) workflow in a balanced, non-population-representative Holstein–Friesian panel using re-audited Sanger-supported reference classifications. Both assays distinguish His67-associated (A1-type) from Pro67-associated (A2-type) β-casein classes rather than complete CSN2 alleles. The paired analysis included 96 independent samples. KASP produced 90 reference-concordant, four reference-discordant, and two no-call outcomes (93.8% all-record reference-concordant yield), whereas T-ARMS PCR produced 77 reference-concordant, six reference-discordant, and 13 ambiguous outcomes (80.2%). Concordance among callable/evaluable results was 95.7% and 92.8%, respectively. In the primary comparison, KASP showed a 13.5 percentage point higher yield (95% CI, 4.2–22.9 percentage points; p = 0.015), mainly because it generated fewer non-interpretable outcomes. All callable KASP discordances involved Pro67/Pro67 reference samples called His67/Pro67. Because no independent DNA dilution, new DNA extraction, repeat KASP run, or new Sanger sequencing was performed, their cause and reproducibility remain unresolved. Formal repeatability and between-run reproducibility were not systematically evaluated; therefore, this comparison is not a formal assay validation and does not define T-ARMS PCR performance beyond the tested local configuration. Discordant, ambiguous, or high-impact classifications require independent repeat testing or sequencing confirmation. Full article