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13 pages, 1948 KB  
Article
Genetic Diversity of Infectious Bronchitis Virus Genotype II in Poland
by Anna Pikuła, Anna Lisowska, Justyna Opolska and Katarzyna Domańska-Blicharz
Pathogens 2026, 15(1), 44; https://doi.org/10.3390/pathogens15010044 - 31 Dec 2025
Viewed by 282
Abstract
The epidemiological situation in Poland for IBV GII (formerly known as D1466) has seemed stable over the years, but an increase in such infections has been recently reported. In this study, genetic characterization of the representatives of this genotype was performed in order [...] Read more.
The epidemiological situation in Poland for IBV GII (formerly known as D1466) has seemed stable over the years, but an increase in such infections has been recently reported. In this study, genetic characterization of the representatives of this genotype was performed in order to determine whether the new epidemic wave of GII IBV was responsible for changes in this status quo. Genotyping based on the complete S1 coding region of eight Polish IBV field strains from 2011 to 2021 confirmed that they belonged to genotype II, with two of them clustered in the two previously identified GII-1 and GII-2 lineages. In turn, the S1 coding region sequences of the next six Polish strains are very different from the previous ones and form a separate group on the phylogenetic tree. However, comprehensive analysis of all complete S1 coding regions of GII strains did not fulfill all parameters needed to create the separate GII lineage, and they all seem to belong to the GII-1 lineage. Further analysis of the partial S1 sequence of 15 IBV GII strains showed their genetic distinctiveness and indicates the ongoing evolution of this virus genotype. Considering the results of our study and the recent outbreaks of GII-2 in Western Europe, it appears that infections with GII virus strains mainly affect egg-producing, long-lived chickens, commercial layers, and breeders. Furthermore, due to the high diversity of these viruses, their circulation in the poultry population may remain undetected, and for this reason, the observed production problems in laying flocks may be attributed to other, unrelated factors. Full article
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16 pages, 2897 KB  
Article
Inactivated Avian Infectious Bronchitis Virus Strains M41 and 4–91 Provide Broad Protection Against Multiple Avian Infectious Bronchitis Strains
by Noortje M. P. van de Weem, Mateusz Walczak, Lieke van Rooij, Frank A. J. Hormes, Peter Hesseling, Lieke Timmers, Pieter A. W. M. Wouters and Rüdiger Raue
Vaccines 2026, 14(1), 39; https://doi.org/10.3390/vaccines14010039 - 29 Dec 2025
Viewed by 453
Abstract
Background/Objective: The poultry industry requires extensive vaccination of chickens against IBV in an effort to prevent the disease in animals and significant economic losses. Current vaccination strategies often lack effectiveness, and the continual emergence of new IBV variants makes disease control increasingly [...] Read more.
Background/Objective: The poultry industry requires extensive vaccination of chickens against IBV in an effort to prevent the disease in animals and significant economic losses. Current vaccination strategies often lack effectiveness, and the continual emergence of new IBV variants makes disease control increasingly challenging. We have developed an inactivated vaccine for poultry containing nine different antigens (Nobilis Multriva), including two IBDV strains, two ARV strains, one NDV strain, one AMPV strain, one EDSV strain and two IBV strains: M41 (genotype GI-1) and 4–91 (genotype GI-13). In this study, the IB efficacy of this novel inactivated vaccine was investigated against homologous and heterologous IBV strains. Methods: Inactivated IBV vaccine containing the M41 and 4–91 strains (Nobilis Multriva) was administered intramuscularly, either alone or following vaccine priming, in SPF and commercial chickens. Birds were challenged with homologous and heterologous IBV strains at defined ages (peak of lay, mid-lay and end of lay). Vaccine efficacy was evaluated through serological assays, clinical observations, and monitoring of egg production post-challenge. Results: This vaccine provided excellent broad protection against different IBV strains circulating in different parts of the world, including IBV M41, 4–91, QX, Q1 and Var2. Furthermore, the vaccine provided long-lasting IBV serological response against IB M41 and IB 4–91 until at least 96 weeks of age in SPF and commercial layers and breeder birds. This vaccine will allow farmers to reduce the number of vaccination moments, thereby minimizing stress to the birds, while also decreasing labor demands and the risk of human error, ultimately contributing to lower overall vaccination costs. Conclusions: Given its demonstrated broad cross-protection and sustained serological responses, this nine-valent inactivated vaccine (Nobilis Multriva) represents a key component of an effective vaccination regimen for controlling IBV infections in the poultry industry. Full article
(This article belongs to the Section Veterinary Vaccines)
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11 pages, 267 KB  
Article
Functional Effects of Single-Stage vs. Multi-Stage Incubation Systems and Parental Flock Age on Embryonic Development, Oxidative Stress, and Performance of Male Broiler Chickens
by Geise Linzmeier, Fernando de C. Tavernari, Aline Zampar, João V. Strapazzon, Paulo V. Oliveira, Roger Wagner, Aleksandro S. da Silva and Marcel M. Boiago
Poultry 2025, 4(4), 55; https://doi.org/10.3390/poultry4040055 - 13 Nov 2025
Viewed by 670
Abstract
It is well established that both the age of the breeder hen and the type of incubator can influence the efficiency of the hatching process. However, there is a lack of information in the literature regarding the interaction between these two factors. This [...] Read more.
It is well established that both the age of the breeder hen and the type of incubator can influence the efficiency of the hatching process. However, there is a lack of information in the literature regarding the interaction between these two factors. This study evaluated the effects of incubator type (multi-stage vs. single-stage) and breeder hen age (35 and 61 weeks) on the hatching parameters, embryonic oxidative stress, performance, carcass yield, and meat quality of male broiler chickens. The embryo livers from the multi-stage incubator presented significantly higher NADP oxidase (NOX) values (p = 0.022), indicating elevated oxidative stress. A significant interaction between breeder age and incubator type was observed for the thiol concentrations, with embryos from older hens incubated in the multi-stage system showing higher thiol levels compared to those from the single-stage system. Birds from these older breeders demonstrated increased breast yield, feed intake, and weight gain, without significant changes in feed conversion ratio. Additionally, the single-stage incubator was associated with reduced embryonic oxidative stress, lower egg weight loss during incubation, and improved early performance of chicks during the first week post-hatch. In conclusion, beyond the previously recognized benefits of single-stage incubation systems, our findings highlight their potential to mitigate oxidative stress in embryos, thereby enhancing early chick development. Full article
16 pages, 2830 KB  
Article
Efficiency of Recurrent Genomic Selection in Panmictic Populations
by José Marcelo Soriano Viana, Jean Paulo Aparecido da Silva and Paulo Sávio Lopes
Animals 2025, 15(19), 2925; https://doi.org/10.3390/ani15192925 - 9 Oct 2025
Viewed by 576
Abstract
Simulation-based studies can support breeders’ decisions inexpensively, since there is no need to perform a new procedure. The objective was to assess the efficiency of recurrent genomic selection in panmictic population under additive–dominance and additive–dominance with epistasis models. We assumed two broiler chicken [...] Read more.
Simulation-based studies can support breeders’ decisions inexpensively, since there is no need to perform a new procedure. The objective was to assess the efficiency of recurrent genomic selection in panmictic population under additive–dominance and additive–dominance with epistasis models. We assumed two broiler chicken populations with contrasting linkage disequilibrium (LD) levels, 38,500 SNPs, and 1000 genes controlling feed conversion ratio. We applied recurrent genomic selection over seven cycles. The genomic selection efficacy, expressed as realized total genetic gain, was proportional to the LD level and genotypic variance. Genomic selection required model updating to achieve a higher efficacy. The training set size required by genomic selection can be as low as 10%/generation. Under this low-cost scenario, the genomic selection efficacy was slightly lower than the maximum efficacy. There is no difference between genetic evaluation methods regarding the decrease in the genotypic variance due to selection. In general, additive value prediction accuracies and realized genetic gains were highly correlated. The accumulated inbreeding level was not high due to avoidance of sib cross. The genomic inbreeding coefficient over generations was close to zero. Except for dominant epistasis, the efficacy of genomic selection was 4.1 to 46.2% lower than the efficacy under no epistasis. Full article
(This article belongs to the Special Issue Genomic Prediction in Livestock)
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16 pages, 816 KB  
Article
Genetic and Phenotypic Parameter Estimates of Body Weight and Egg Production Traits of Tilili Chicken in Ethiopia
by Birhan Kassa, Mengistie Taye, Wondmeneh Esatu, Adebabay Kebede, Mekonnen Girma, Fasil Getachew Kebede, Georgios Banos, Kellie Watson, Olivier Hanotte and Tadelle Dessie
Animals 2025, 15(18), 2656; https://doi.org/10.3390/ani15182656 - 10 Sep 2025
Cited by 1 | Viewed by 1620
Abstract
High genetic variation in African indigenous chicken populations provides opportunities for long-term genetic improvement. This study estimated genetic parameters for economic traits based on data derived from a nucleus flock comprising two generations, derived from 40 sires and 200 dams in a line [...] Read more.
High genetic variation in African indigenous chicken populations provides opportunities for long-term genetic improvement. This study estimated genetic parameters for economic traits based on data derived from a nucleus flock comprising two generations, derived from 40 sires and 200 dams in a line breeding program through mass selection. Body weight (BW) at different weeks was analyzed for 1370 chickens. Similarly, egg performance was evaluated on 473 hens kept for 44 weeks. Genetic parameters were estimated using a multi-trait animal model based on an average information-restricted maximum likelihood (AI-REML) algorithm in WOMBAT software. Body weight showed significant heritability (p < 0.001), ranging from 0.251 for body weight at 8 weeks of age (BW8) to 0.34 for body weight at 16 weeks of age (BW16), indicating a good genetic improvement potential. Egg production traits had low to moderate heritability (0.08–0.37). Positive genetic correlations among growth traits, particularly BW8 and body weight at 12 weeks of age, BW12 (rG = 0.94), suggest shared genetic influences and the possibility of improving multiple traits simultaneously. The genetic correlation between BW16 and the cumulative egg number varied from low and negative (−0.02) in the first two months to high (0.51) in the cumulative egg number over six months, suggesting that heavier birds lay more eggs over time. Our limited dataset based on two generations and pedigree demonstrates that BW16 with egg production has moderate heritability and strong genetic correlations that can lead to genetic progress toward the development of a dual-purpose breed, and this offers a scientific basis for breeders to develop selection indices to develop a dual-purpose breed for smallholder production systems. Full article
(This article belongs to the Special Issue Genetic Diversity and Conservation of Local Poultry Breeds)
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23 pages, 892 KB  
Review
Genetic Resistance to Newcastle Disease in Poultry: A Narrative Review
by Thiruvenkadan Aranganoor Kannan, Srinivasan Palani, Saravanan Ramasamy, Sivakumar Karuppusamy, Sunday Olusola Peters and Malarmathi Muthusamy
Poultry 2025, 4(3), 40; https://doi.org/10.3390/poultry4030040 - 30 Aug 2025
Viewed by 2452
Abstract
Newcastle Disease (ND) is an important and notable disease among the avian infectious diseases, because of its high contagiousness, and the most virulent strains of ND virus (NDV) have impacted poultry breeders all over the world. Immunization and biosecurity measures are used to [...] Read more.
Newcastle Disease (ND) is an important and notable disease among the avian infectious diseases, because of its high contagiousness, and the most virulent strains of ND virus (NDV) have impacted poultry breeders all over the world. Immunization and biosecurity measures are used to reduce ND; however, vaccination has been shown to offer protection against clinical signs but not against virus proliferation and shedding, which could have an adverse effect on the environment. The genetic basis for inherent resistance to NDV has been established, and genetic selection on existing resistance-related genetic variation can help to mitigate virus propagation. Further, understanding the genes and processes that drive the response to NDV will lay the groundwork for genetic improvement in poultry. The majority of studies on NDV susceptibility make use of phenotypic indicators such as body weight, morbidity, mortality, antibody response, and viral load. According to recent advancements in molecular genetic research, many different genes are diversely regulated in different chicken lines to NDV infection, which might be used in the future to establish disease-resistant breeding approaches. It is possible that many more genes linked to illness and resistance are still to be discovered, because the precise mechanism of resistance is not entirely understood. The enhanced genetic knowledge of chickens and the development of more advanced transgenic techniques would lead to pathogen resistance. Hence, this paper summarizes the current understanding of genetic resistance to Newcastle Disease, and we additionally highlight a few possible genes/markers connected with NDV that may improve chicken resistance to NDV infections and can be used to produce NDV-resistant chicken breeds/strains in the near future. Full article
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18 pages, 1194 KB  
Article
In Ovo Feeding of Arginine, Leucine, and Methionine in Broiler Breeders’ Eggs During Summer: Effects on Hatchability and Chick Oxidation, Inflammation, and Apoptosis
by Huan Ge, Zhenwu Huang, Jinghai Feng and Minhong Zhang
Animals 2025, 15(13), 1930; https://doi.org/10.3390/ani15131930 - 30 Jun 2025
Viewed by 1394
Abstract
Summer high temperatures (27–38 °C, more than 7 days) readily induce heat stress in late-laying broiler breeders, which impedes offspring growth and development. This study aimed to provide a scientific basis for improving the offspring development of late-laying broiler breeders during summer. Six [...] Read more.
Summer high temperatures (27–38 °C, more than 7 days) readily induce heat stress in late-laying broiler breeders, which impedes offspring growth and development. This study aimed to provide a scientific basis for improving the offspring development of late-laying broiler breeders during summer. Six hundred fertilized eggs from 50-week-old LiFeng broiler breeders were divided into five treatment groups (non-injected, NaCl-injected, 6 mg/egg L-arginine-injected, 3.5 mg/egg L-methionine-injected, 8.4 mg/egg L-leucine-injected), with six replicates per group and 20 eggs per replicate. Embryos were incubated for 21 days and chicks raised for 21 days post-hatch. Methionine injection significantly enhanced hatchability (+5.8%), increased daily chick weight gain (+8.8%), reduced serum urea nitrogen (−53.13%), decreased inflammatory cytokine levels, elevated antioxidant enzyme activities, lowered malondialdehyde content (−47.99%), and suppressed expression of inflammatory and apoptotic pathway genes. The comprehensive effect of methionine was the best among the three amino acids when injected into chicken embryos. Methionine promoted protein synthesis, enhanced antioxidant and anti-inflammatory capacities, and consequently improved chick growth performance. Full article
(This article belongs to the Section Animal Nutrition)
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12 pages, 2086 KB  
Article
Factor Analysis of Semen Quality in Chicken and Its Impact on Fertility
by Yunlei Li, Yanyan Sun, Aixin Ni, Hailai Hagos Tesfay, Adamu Mani Isa, Yunhe Zong, Hui Ma, Jingwei Yuan and Jilan Chen
Animals 2025, 15(13), 1906; https://doi.org/10.3390/ani15131906 - 28 Jun 2025
Cited by 3 | Viewed by 1858
Abstract
Evaluation of semen quality is crucial for predicting fertility success in artificial insemination and eventual rooster selection within poultry breeding programs. However, the multitude of parameters obtained in semen quality analysis makes it challenging for breeders to make informed selection decisions. This study [...] Read more.
Evaluation of semen quality is crucial for predicting fertility success in artificial insemination and eventual rooster selection within poultry breeding programs. However, the multitude of parameters obtained in semen quality analysis makes it challenging for breeders to make informed selection decisions. This study evaluated semen samples from 210 roosters in seven chicken breeds, using a computer-aided sperm analysis (CASA) system. A multivariate approach utilizing factor analysis (FA) was applied to simplify the data. The FA condensed 14 semen quality traits into 3 factors, linearity factor, velocity factor, and quantitative factor, explaining 75.82% of the original variations. The Beijing-You breed was selected to analyze the association between fertility and these semen quality factors, and we found high correlation between fertility and quantitative (r = 0.84) and linearity (r = 0.63) factors, and low correlation with the velocity factor (r = 0.19). Based on individual factor scores, breed clustering revealed distinct profiles with Houdan, Tibetan, and White Leghorn demonstrating lower sperm counts and poor linearity. Columbian Plymouth Rock exhibited high speed with poor linearity while Beijing-You, Rhode Island Red, and Barred Plymouth Rock displayed higher sperm counts with compromised speed and linearity. This study demonstrates that FA effectively consolidates multiple semen quality traits into fewer, biologically relevant factors. These findings provide valuable insights into breed-specific reproductive characteristics and offer actionable information for optimizing breeding in poultry production. Full article
(This article belongs to the Special Issue Livestock Fertility and Artificial Insemination)
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18 pages, 4359 KB  
Article
Deep Learning Methods for Automatic Identification of Male and Female Chickens in a Cage-Free Flock
by Bidur Paneru, Ramesh Bahadur Bist, Xiao Yang, Anjan Dhungana, Samin Dahal and Lilong Chai
Animals 2025, 15(13), 1862; https://doi.org/10.3390/ani15131862 - 24 Jun 2025
Cited by 4 | Viewed by 1920
Abstract
Rooster behavior and activity are critical for egg fertility and hatchability in broiler and layer breeder houses. Desirable roosters are expected to have good leg health, reach sexual maturity, be productive, and show less aggression toward females during mating. However, not all roosters [...] Read more.
Rooster behavior and activity are critical for egg fertility and hatchability in broiler and layer breeder houses. Desirable roosters are expected to have good leg health, reach sexual maturity, be productive, and show less aggression toward females during mating. However, not all roosters are desirable, and low-productive roosters should be removed and replaced. The objectives of this study were to apply an object detection model based on deep learning to identify hens and roosters based on phenotypic characteristics, such as comb size and body size, in a cage-free (CF) environment, and to compare the performance metrics among the applied models. Six roosters were mixed with 200 Lohmann LSL Lite hens during the pre-peak phase in a CF research facility and were marked with different identifications. Deep learning methods, such as You Only Look Once (YOLO) models, were innovated and trained (based on a comb size of up to 2500 images) for the identification of male and female chickens based on comb size and body features. The performance matrices of the YOLOv5u and YOLOv11 models, including precision, recall, mean average precision (mAP), and F1 score, were statistically compared for hen and rooster detection using a one-way ANOVA test at a significance level of p < 0.05. For rooster detection based on comb size, YOLOv5lu, and YOLOv11x variants performed the best among the five variants of each model, with YOLOv5lu achieving a precision of 87.7%, recall of 56.3%, and mAP@0.50 of 60.1%, while YOLOv11x achieved a precision of 86.7%, recall of 65.3%, and mAP@0.50 of 61%. For rooster detection based on body size, YOLOv5xu, and YOLOv11m outperformed other variants, with YOLOv5xu achieving a precision of 88.9%, recall of 77.7%, and mAP@0.50 of 82.3%, while YOLOv11m achieved a precision of 89.0%, recall of 78.8%, and mAP@0.50 of 82.6%. This study provides a reference for automatic rooster monitoring based on comb and body size and offers further opportunities for tracking the activities of roosters in a poultry breeder farm for performance evaluation and genetic selection in the future. Full article
(This article belongs to the Section Animal System and Management)
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29 pages, 3779 KB  
Article
Impact of Thermal Manipulation of Broiler Eggs on Growth Performance, Splenic Inflammatory Cytokine Levels, and Heat Shock Protein Responses to Post-Hatch Lipopolysaccharide (LPS) Challenge
by Mohammad Borhan Al-Zghoul, Seif Hundam, Mohammad Mayyas, David E. Gerrard and Rami A. Dalloul
Animals 2025, 15(12), 1736; https://doi.org/10.3390/ani15121736 - 12 Jun 2025
Cited by 2 | Viewed by 2631
Abstract
Thermal manipulation (TM) during embryogenesis is a promising non-pharmacological strategy to enhance physiological resilience in broiler chickens. This study evaluated the impact of thermal conditioning of fertile eggs on growth performance, inflammatory responses, and molecular stress markers following a post-hatch lipopolysaccharide (LPS) challenge. [...] Read more.
Thermal manipulation (TM) during embryogenesis is a promising non-pharmacological strategy to enhance physiological resilience in broiler chickens. This study evaluated the impact of thermal conditioning of fertile eggs on growth performance, inflammatory responses, and molecular stress markers following a post-hatch lipopolysaccharide (LPS) challenge. Fertilized eggs (average weight 62 ± 3 g) were obtained from 35-week-old Indian River broiler breeder hens. A total of 720 eggs were randomly assigned to either the control group (n = 360) or the TM group (n = 360), with each group consisting of two replicates of 180 eggs. Control eggs were maintained under standard incubation conditions (37.8 °C, 56% RH), while TM eggs were subjected to elevated temperature (38.8 °C, 65% RH) for 18 h daily from embryonic day 10 to 18. On post-hatch day 15, control and TM groups were administered either saline or LPS via intraperitoneal (IP) injection. Body weight and temperature, internal organ weights, and splenic mRNA expression levels of inflammatory cytokines, toll-like receptors, transcription factors, and heat shock proteins were assessed. TM did not alter hatchability (p = 0.633), but significantly shortened hatch time (p < 0.05) and improved feed efficiency (p < 0.05). While LPS induced marked inflammatory responses in all birds, those subjected to TM exhibited attenuated proinflammatory cytokine expression, enhanced anti-inflammatory signaling, and differential regulation of stress-associated genes, including nuclear factor kappa B (NF-κB), heat shock protein 70 (HSP70), and heat shock factors (HSFs). These findings suggest that TM during incubation promotes a more regulated immune response and improved stress adaptation post-hatch. This approach offers a potential antibiotic-free intervention to enhance broiler health, performance, and resilience under immunological stress. Full article
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19 pages, 2255 KB  
Article
In Vitro Characterization and Safety Assessment of Streptococcus salivarius, Levilactobacillus brevis and Pediococcus pentosaceus Isolated from the Small Intestine of Broiler Breeders
by Nwabisa Happiness Kokwe, Freedom Tshabuse and Feroz Mahomed Swalaha
Microorganisms 2025, 13(6), 1231; https://doi.org/10.3390/microorganisms13061231 - 27 May 2025
Cited by 1 | Viewed by 1047
Abstract
In poultry production, antibiotics have been excessively used as growth promoters to support well-being and decrease mortality caused by pathogenic microorganisms. The overuse of antibiotics has led to the emergence of antibiotic-resistant bacteria and the presence of antibiotic residues in poultry products. To [...] Read more.
In poultry production, antibiotics have been excessively used as growth promoters to support well-being and decrease mortality caused by pathogenic microorganisms. The overuse of antibiotics has led to the emergence of antibiotic-resistant bacteria and the presence of antibiotic residues in poultry products. To counteract this problem, probiotics could be used as adjuncts or as substitutes for preserving a diverse and balanced microflora to prevent the colonization and multiplication of pathogenic bacteria in the GI tract. This study aimed to isolate and characterize the potential probiotic properties of lactic acid bacteria from the small intestine of 23-week-old broiler breeders, with the goal of identifying potential probiotic candidates. Four phenotypically healthy broiler breeders were selected, and intestinal contents were aseptically collected and cultured on MRS agar. From the initial pool of 39 colonies, six isolates were identified based on Gram-positive and catalase-negative characteristics and further classified using 16S rRNA sequencing as Levilactobacillus brevis (n = 3), Pediococcus pentosaceus (n = 2), and Streptococcus salivarius (n = 1). These strains were further evaluated for probiotic properties such as transit resistance to simulated upper gastrointestinal conditions, antagonist activity, haemolytic activity, and cell surface properties such as autoaggregation, co-aggregation and hydrophobicity, in vitro. L. brevis NKFS8 showed good tolerance to pH 3, while P. pentosaceus NKSF10 exhibited good tolerance to pH 4 acidic conditions. All isolates demonstrated good survivability in bile salt concentration of 3% (w/v), with P. pentosaceus NKSF10 exhibiting the highest tolerance. The isolates showed a wide range of antagonistic activity against the test pathogens Pseudomonas aeruginosa (ATCC 27853), Salmonella typhimurium, Salmonella enterica (ATCC 13314), Staphylococcus aureus (ATCC 29213), and Listeria monocytogenes (ATCC 7644). Furthermore, these strains exhibited good auto-aggregation, co-aggregation, and hydrophobicity properties. In conclusion, lactic acid bacteria from the small intestine of broiler breeders present a valuable prospect for the development of effective probiotics. These probiotics can be utilized as a supplementary inclusion in poultry feed, obviating the need for antibiotics as growth promoters. Nevertheless, additional in vivo studies are required to closely monitor and assess the effects of probiotics on the gastrointestinal system of chickens. Full article
(This article belongs to the Section Microbial Biotechnology)
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17 pages, 1372 KB  
Review
Genetic Strategies for Enhancing Rooster Fertility in Tropical and Humid Climates: Challenges and Opportunities
by Jiraporn Juiputta, Vibuntita Chankitisakul and Wuttigrai Boonkum
Animals 2025, 15(8), 1096; https://doi.org/10.3390/ani15081096 - 10 Apr 2025
Cited by 2 | Viewed by 1884
Abstract
Native chickens are important both economically and for the preservation of genetic diversity, especially for optimizing the reproductive performance of male chickens, which plays an important role in genetic propagation. However, hot and humid weather affects the quality of semen and the breeding [...] Read more.
Native chickens are important both economically and for the preservation of genetic diversity, especially for optimizing the reproductive performance of male chickens, which plays an important role in genetic propagation. However, hot and humid weather affects the quality of semen and the breeding ability of male chickens. One method used to solve this problem is genetic selection using genomic technology, which improves accuracy and shortens the breed selection time. Therefore, we collected and analyzed data from relevant research to review the genetic improvement approach for male chickens using genomic technology. We compared popular genomic selection models, such as GBLUP, ssGBLUP, Bayesian approaches, RR-GBLUP, WGBLUP, and MTGBLUP, as well as genome-wide association studies (GWASs), to identify genes associated with semen quality and heat tolerance. The results of this analysis suggested that the use of genomic data can enhance genetic selection and enable breeding to occur more quickly and accurately. We addressed the trends and scientific developments in male chicken genetic selection, together with the benefits and constraints of each method. This will help breeders and researchers to create the most successful genetic selection plans for the next generation of chickens. Full article
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10 pages, 4107 KB  
Article
Whole Genome Analysis of Proteus mirabilis in a Poultry Breeder Farm Reveals the Dissemination of blaNDM and blaCTX-M Mediated by Diverse Mobile Genetic Elements
by Haibin Hu, Ke Wu, Tiejun Zhang, Yuhuan Mou, Luya Liu, Xiaoqin Wang, Wei Xu, Wenping Chen, Xiaojiao Chen, Hongning Wang and Changwei Lei
Agriculture 2025, 15(5), 555; https://doi.org/10.3390/agriculture15050555 - 5 Mar 2025
Cited by 1 | Viewed by 2334
Abstract
Proteus mirabilis is a significant foodborne opportunistic pathogen associated with various nosocomial infections. Chicken farms may serve as an important reservoir for P. mirabilis. However, research on antibiotic resistance and genomic features of P. mirabilis in China’s poultry industry is limited. This [...] Read more.
Proteus mirabilis is a significant foodborne opportunistic pathogen associated with various nosocomial infections. Chicken farms may serve as an important reservoir for P. mirabilis. However, research on antibiotic resistance and genomic features of P. mirabilis in China’s poultry industry is limited. This study isolates P. mirabilis from a breeder farm in China and investigates the dissemination of P. mirabilis and clinically significant antibiotic resistance genes (ARGs), including blaNDM and blaCTX-M. From 510 samples, 69 isolates were obtained, classified into 11 sequence types (STs), with ST135 and ST175 predominating. A total of 39 ARGs were detected, including fosA3, floR, blaCTX-M-3, blaCTX-M-65, and blaNDM-1. Genetic analysis revealed that blaNDM-1 was exclusively located on Salmonella genomic island 1 (SGI1), while blaCTX-M was found in various mobile genetic elements (MGEs), including Tn7, SXT/R391 integrative conjugative elements (ICEs), Proteus mirabilis genomic resistance island 1 (PmGRI1), and SGI1. Notably, many isolates carried multiple MGEs, suggesting frequent horizontal transfer of ARGs in P. mirabilis. These findings underscore the role of P. mirabilis in carrying and spreading antibiotic resistance, posing significant risks to the poultry industry and public health. Full article
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15 pages, 1464 KB  
Article
Protective Effect of a Hyperimmune Serum Against Homologous Enterococcus cecorum Infection in Experimentally Challenged Meat-Type Chickens
by Amanda Rosenbaum, Silke Rautenschlein and Arne Jung
Poultry 2025, 4(1), 8; https://doi.org/10.3390/poultry4010008 - 5 Feb 2025
Viewed by 1614
Abstract
Knowledge about chickens’ immune response to infection with Enterococcus cecorum (EC) and prophylactic strategies is scarce. This study aimed to investigate the protective effect of an EC-specific hyperimmune serum after experimental challenge with homologous EC. A total of 284 one-day-old meat-type chickens were [...] Read more.
Knowledge about chickens’ immune response to infection with Enterococcus cecorum (EC) and prophylactic strategies is scarce. This study aimed to investigate the protective effect of an EC-specific hyperimmune serum after experimental challenge with homologous EC. A total of 284 one-day-old meat-type chickens were randomly assigned to three groups (non-inoculated (C), passively immunized with hyperimmune serum and EC-inoculated (EPI), and EC-inoculated (E)). At 1 and 2 days post-hatch (dph), the hyperimmune serum was subcutaneously administered to each chicken in group EPI. Oral inoculation with EC was carried out at 2 dph. Blood samples and cloacal swabs were collected at 7, 14, 21, 28, and 35 dph and necropsy was carried out at 42/43 dph. Extraintestinal colonization with EC was significantly decreased in group EPI compared to group E. Additionally, femoral head necrosis and spondylitis of the free thoracic vertebra were significantly decreased in group EPI compared to group E. Flow cytometric analysis revealed a significant increase in heterophils, monocytes, and the heterophil/lymphocyte ratio in the peripheral blood of bacteriological positive chickens. Although the parenteral application of a hyperimmune serum lacks practicability in meat-type chicken flocks, the results of this study encourage further research on vaccination of meat-type chicken breeder flocks. Full article
(This article belongs to the Special Issue Current Research and Key Issues in Poultry Immunology)
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14 pages, 249 KB  
Article
Coccidia Vaccine Challenge and Exogenous Enzyme Supplementation in Broiler Chicken 2—Effect on Apparent Ileal Nutrient and Energy Digestibility and Intestinal Morphology 7 and 14 Days Post-Challenge
by Sunday A. Adedokun, Andrew Dunaway and Richard Adefioye
Animals 2025, 15(3), 401; https://doi.org/10.3390/ani15030401 - 31 Jan 2025
Viewed by 1285
Abstract
The effect of exogenous mixed-enzyme supplementation (xylanase, β-glucanase, and pectinase) and coccidia vaccine challenge (CVC, Coccivac B-52™) on broilers fed a corn–SBM (CS) and a wheat–CS (WCS)-based diet was examined in this study. On day 14, 448 Cobb by-product breeder male broiler chickens [...] Read more.
The effect of exogenous mixed-enzyme supplementation (xylanase, β-glucanase, and pectinase) and coccidia vaccine challenge (CVC, Coccivac B-52™) on broilers fed a corn–SBM (CS) and a wheat–CS (WCS)-based diet was examined in this study. On day 14, 448 Cobb by-product breeder male broiler chickens were assigned to treatments (factorial arrangement) in a completely randomized design, with each treatment replicated seven times. Treatment effect was evaluated within each diet type as a 2 (enzyme levels) x 2 (CVC, 0 or 20X) factorial arrangement of treatments 7 and 14 days post-CVC. The 7-day (days 14–21) post-CVC, BWG, and feed efficiency (birds on the CS-based diet) were lower (p < 0.05), while birds on enzyme-supplemented diets had higher (p < 0.05) BWG compared to birds on diets without enzyme supplementation. Between days 21 and 28, an interaction between CVC and exogenous enzyme resulted in higher (p < 0.05) BWG compared with the challenged birds fed diets without enzyme supplementation. For birds fed WCS-based diets, CVC influenced (p < 0.05) BWG and feed efficiency (decreased days 14–21 and increased days 21–28), while CVC birds had higher BWG and feed efficiency 14 days post-CVC. Apparent ileal digestibility of dry matter, energy, and DE were lower (p < 0.05) in CVC broilers fed either the CS- or WCS-based diets (7 and 14 days post-CVC). Interaction between CVC and exogenous enzyme supplementation indicated that CVC, irrespective of exogenous enzyme supplementation with the WCS-based diet, decreased (p < 0.05) Ca utilization (7 days post-CVC) but increased (p < 0.05) Ca utilization compared to CVC birds without enzyme supplementation 14 days post-challenge. Seven days post-CVC, irrespective of the diet type, CVC resulted in lower (p < 0.05) duodenal VH and VH:CD and higher (p < 0.05) CD. Enzyme supplementation influenced (p < 0.05) duodenal CD (increased) and VH:CD (decreased) in birds fed the WCS-based diet. Results from this study showed that complete recovery from CVC was influenced by diet type, with CVC birds fed WCS-based diet having higher BWG and feed efficiency compared to the unchallenged birds. Full article
(This article belongs to the Section Animal Nutrition)
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