Search Results (27)

Climate warming—a key driver of global change—significantly affects soil microbial communities and network stability. Biological soil crusts (biocrusts) help mitigate these impacts while maintaining soil ecological functions and biodiversity. However, how microbial networks and community dynamics respond to warming remains poorly understood between biocrust types, namely cyanobacterial and moss biocrust. In this study, we investigated the effect of warming on microbial communities and network stability in these biocrusts within the Mu Us Sandland, China. Using structural equation modeling (SEM), we found that warming altered microbial network properties: compared to the control, warming increased network vulnerability and decreased robustness specifically in cyanobacterial biocrusts. Warming and decreased soil moisture acted as strong filtering factors, resulting in lower microbial network stability. Although overall network complexity remained unchanged, warming reduced connectivity in cyanobacterial biocrusts, thus undermining network stability. Moreover, under both warming and control conditions, moss biocrusts exhibited lower robustness but higher vulnerability than cyanobacterial biocrusts, indicating cyanobacterial biocrusts displayed greater microbial network stability in comparison. Additionally, warming reduced the number of module hubs and keystone phyla in both biocrust types, decreasing key taxa abundance and weakening direct microbial interactions. We concluded that warming impaired microbial network stability by reducing connectivity in cyanobacterial biocrusts. These findings highlight the superior capacity of cyanobacterial biocrusts to sustain soil microbial network stability under climate warming and identify shifts in network connectivity as a central mechanism driving biocrust responses to environmental stress. Full article

Biocrusts are critical yet threatened components of dryland ecosystems, and predicting their functional trait dynamics under future scenarios is essential for conservation planning. Using 129 occurrence localities and 84 trait sampling sites across three precipitation zones in China’s Mu Us Sandland, we combined MaxEnt habitat modeling with Random Forest regression to predict biocrust functional traits—including coverage, thickness, and total volume for both moss and cyanobacterial crusts—under current conditions and 12 future climate–land use scenarios (four SSPs × three time periods: 2050s–2090s). Soil nitrogen, annual precipitation, and soil potassium emerged as key environmental drivers of biocrust habitat distribution. Currently, moss crusts cover 7.63% of the study area (thickness: 10.56 mm) and cyanobacterial crusts cover 5.88% (thickness: 4.88 mm), with a total biocrust volume of 4629 × 10⁴ m³. Across the emission and policy gradient, functional traits exhibited contrasting responses: coverage showed scenario-dependent declines, while thickness remained relatively stable. Under SSP126, moss coverage declined by 3.32% and cyanobacterial coverage by 2.80% by the 2070s, with total volume decreasing by 2064.76 × 10⁴ m³; by the 2090s, moss coverage partially recovered (+0.26%). In contrast, SSP370 and SSP585 projected sustained losses without recovery. A striking divergence emerged: cyanobacterial thickness increased consistently (+0.02 to +0.23 mm) even as coverage declined, while moss thickness fluctuated within ±0.13 mm. Notably, high-precipitation transitional zones (362–434 mm) exhibited the greatest vulnerability, with moss coverage declining 3× more under SSP126 than SSP585 by the 2070s and volume losses persisting through the 2090s. These findings provide spatially explicit predictions of biocrust traits and quantitative baselines for prioritizing conservation in transitional zones facing accelerating environmental pressures. Full article

Biological soil crusts (BSCs) are critical ecological components in arid lands. Their formation and stability hinge on the assembly and interactive networks of cyanobacteria-led bacterial communities. Yet, how different functional cyanobacteria shape the underlying microbial structure and assembly rules is poorly understood. Here, we cultivated artificial algal crusts using two representative cyanobacteria: the nitrogen-fixing Leptolyngbya sp. and the non-nitrogen-fixing Microcoleus vaginatus (M. vaginatus CM01). A total of six treatments were established based on the presence or absence of spraying with in situ BSCs leachate: a control group without inoculation of algae or bacteria (soil, S); a treatment group sprayed only with bacterial suspension (soil + bacteria, SB); a treatment group sprayed only with M. vaginatus CM01 (soil + M. vaginatus CM01, SM); a treatment group co-inoculated with both BSCs leachate and M. vaginatus CM01 (soil + M. vaginatus CM01 + bacteria, SMB); a treatment group inoculated only with Leptolyngbya sp. CT01 (soil + Leptolyngbya sp. CT01, SL); and a treatment group co-inoculated with Leptolyngbya sp. CT01 and biocrust leachate (soil + Leptolyngbya sp. CT01 + bacteria, SLB). By integrating 16S rRNA gene sequencing, neutral community modeling (NCM), and structural equation modeling (SEM), we dissected differences in Cyano-BSCs development, bacterial community composition, co-occurrence networks, and assembly mechanisms. Inoculation with M. vaginatus CM01 (SM, SMB) superiorly promoted Cyano-BSCs development: the SM group achieved the highest coverage (23.33%), while the SMB group showed marked increases in organic matter (OM, 4.10 g·kg⁻¹) and chlorophyll a (Chla, 13.40 μg·g⁻¹), alongside a >5-fold rise in bacterial, cyanobacterial, and nitrogen-fixation gene abundances versus controls. The mechanism centers on extracellular polymeric substances (EPS) secreted by M. vaginatus, which homogenized the microenvironment, suppressed stochastic bacterial dispersal (NCM, SM: R² = 0.698), and enhanced deterministic selection. This process forged a highly cooperative network (89.74% positive links, average degree 34.71) that directionally enriched Cyanobacteria (relative abundance 40.40%). The Shannon index of Cyano-BSCs from the group (SMB) reached 7.72 ± 0.09, reflecting high microbial community diversity. SEM confirmed M. vaginatus directly regulated bacterial assembly (path coefficient = 0.59, p < 0.05) and indirectly improved the soil environment (path coefficient = 0.64, p < 0.05), establishing a “cyanobacteria-community-environment” feedback loop. Conversely, the Leptolyngbya sp. groups (SL, SLB), despite enriching nitrogen-fixing bacteria and fungi, exhibited low carbon fixation efficiency (notably 1.26 g·kg⁻¹ OM in SL) and lack of EPS; communities remained stochastic (NCM, SL: R² = 0.751) with no effective regulatory pathway—a pattern mirrored in S and SB groups. Our findings demonstrate that M. vaginatus acts as a core engineer of biological soil Cyano-BSCs formation via an “EPS-mediated habitat filtering—functional group enrichment—cooperative network assembly” cascade, enforcing deterministic community construction. Leptolyngbya sp., with limited niche-constructing ability, fails to exert comparable control. This work provides a targeted framework for the artificial restoration of Cyano-BSCs in arid zones. Full article

Marine fog is a key non-rainfall water source that sustains microbial activity and transports dissolved nutrients inland, influencing early soil development in hyperarid ecosystems. However, the mechanisms through which sustained fog inputs drive soil surface modification and biocrust formation remain poorly understood. This study evaluated the effects of long-term fog augmentation on soil surface development, biocrust dynamics, and associated microbial communities in the Atacama Desert. We implemented a four-year fog addition field experiment with three sampling times (T0, T24, T48) to assess changes in soil physicochemical properties, biocrust composition, and the integrated multi-diversity of archaea, bacteria, fungi and protist. Sustained fog input transformed bare soils into biological soil crusts, particularly lichen- and moss-dominated stages. This transition was accompanied by increases in soil nitrogen, variations in organic matter accumulation, a shift from alkaline to near-neutral pH, and improvements in soil stability and water retention. Multi-diversity increased over time and was positively associated with ecosystem variables linked to water availability, structural stabilization, and decomposition. These functions, integrated into an ecosystem multifunctionality index, also increased under prolonged fog input, revealing a positive relationship between multifunctionality and multi-diversity. Overall, the results demonstrate that sustained fog input strongly enhances early soil surface development and biocrust establishment, highlighting the ecological importance of marine fog in shaping biodiversity and ecosystem functioning in hyperarid landscapes. Full article

Arctic biological soil crusts (biocrusts) are known to host diverse fungal communities that facilitate nutrient cycling and soil stabilisation in these harsh environments. In this study, the diversity and composition of fungi were assessed across elevation and spatial gradients in biocrusts from Kongsfjorden (Svalbard) using metagenomic sequencing. Within the observed fungal phyla, Ascomycota was dominant across all sites, with Basidiomycota and Rozellomycota also exhibiting high abundances. Furthermore, saprotrophic fungi were most abundant, followed by mycorrhizal and parasitic guilds. Lichen-associated fungi were also detected across the samples, although their read counts were substantially lower. Additionally, the fungal genus richness and guild composition exhibited no significant variation between elevations, but location within the fjord strongly shaped community structure. Full article

This study investigates the long-term effects of catastrophic phosphate mining effluent contamination on the biocrust microbial community structure in sections of the ephemeral Ashalim Stream, Negev Desert, Israel. Microbial communities were characterized using next-generation sequencing of 16S rRNA gene fragments, conducted 1.5 and 5 years after the contamination event, across five stream strips. Samples from the nearby, uncontaminated Gmalim Stream served as controls. Biocrusts from Ashalim showed higher relative abundances of the phyla Actinobacteria and Firmicutes compared to Gmalim, whereas Chloroflexi were more prevalent in the controls. At the genus level, Blastococcus, Bacillus, Massilia, and Noviherbaspirillum were more abundant in the Ashalim strips, while Flavisolibacter, Segetibacter, and Rhodocytophaga were more abundant in the controls. Notably, genera within the Cyanobacteria phylum accounted for only 0.0–2.0% of sequences in Ashalim samples versus 2.5–20% in controls. The filamentous Leptolyngbya, Tychonema, and Trichocoleus genera were the most dominant cyanobacteria in all samples. The Nitrogen-fixing cyanobacterial genera Scytonema and Nostoc were consistently detected in Gmalim, but only in trace numbers in certain Ashalim sites. The results from both sampling campaigns support the hypothesis that phosphate effluent contamination had a profound impact on biocrust microbial community structure and function. In particular, the marked reduction in Cyanobacteria suggests a long-lasting disruption that may substantially hinder the natural ecosystem rehabilitation. Full article

Soil degradation has been accelerating globally due to climate change, which threatens food production, biodiversity, and ecosystem balance. Traditional soil restoration strategies are often expensive, slow, or unsustainable in the long term. In this context, cyanobacteria have emerged as promising biotechnological alternatives, being the only prokaryotes capable of performing oxygenic photosynthesis. Moreover, they can capture atmospheric carbon and nitrogen, release exopolysaccharides (EPSs) that stabilize the soil, and facilitate the development of biological soil crusts (biocrusts). In recent years, the convergence of multi-omics tools, such as metagenomics, metatranscriptomics, and metabolomics, has advanced our understanding of cyanobacterial dynamics, their metabolic potential, and symbiotic interactions with microbial consortia, as exemplified by the cyanosphere of Microcoleus vaginatus. In addition, recent advances in bioinformatics have enabled high-resolution taxonomic and functional profiling of environmental samples, facilitating the identification and prediction of resilient microorganisms suited to challenging degraded soils. These tools also allow for the prediction of biosynthetic gene clusters and the detection of prophages or cyanophages within microbiomes, offering a novel approach to enhance carbon sequestration in dry and nutrient-poor soils. This review synthesizes the latest findings and proposes a roadmap for the translation of molecular-level knowledge into scalable biotechnological strategies for soil restoration. We discuss approaches ranging from the use of native biocrust strains to the exploration of cyanophages with the potential to enhance cyanobacterial photosynthetic activity. By bridging ecological functions with cutting-edge omics technologies, this study highlights the critical role of cyanobacteria as a nature-based solution for climate-smart soil management in degraded and arid ecosystems. Full article

Biological soil crusts (referred to as biocrusts) constitute prominent components within the ecosystem of tropical coral islands in the South China Sea, covering approximately 6.25% of the island’s terrestrial surface. Biocrusts are the key to the restoration of the island ecosystem. It is widely acknowledged that phototrophic microorganisms profoundly contribute to biocrust formation and development. They provide fixed carbon and nitrogen and produce exopolysaccharides for the BSC ecosystems. Although aerobic anoxygenic phototrophic bacteria (AAPB) are an important functional group of phototrophic microorganisms, the community characteristics of AAPB in coral island biocrusts and their role in the formation of biocrusts have rarely been reported. In this study, we employed amplifications of the pufM gene to characterize the AAPB communities of biocrusts on a tropical coral island. The outcomes revealed a discernible augmentation in both the abundance and richness of AAPB concurrent with the formation of biocrusts, concomitantly with a decrement in diversity. Within the AAPB communities, the Pseudomonadota (Proteobacteria) phylum emerges as the prevailing dominion, indicating marked differentiations in terms of family and genus compositions between the biocrust and bare soil. Canonical correlation analysis has unveiled a robust and meaningful correlation between the AAPB composition and the attributes of the soil, including total nitrogen, total organic carbon, total phosphorus, pH, and calcium content. Furthermore, co-occurrence network patterns shift with biocrust formation, enhancing stability. Meanwhile, keystone taxa analysis revealed specific OTUs associated with each soil type, with genus Brevundimonas as the main group. Furthermore, pure-culture AAPB strains isolated from biocrusts exhibited a panorama of diversity, predominantly belonging to Pseudomonadota. Particularly, the Skermanella and Erythrobacter genera demonstrated strong exopolysaccharide secretion and sand-binding capabilities. This study sheds light on the significant functional role of AAPB in tropical coral island biocrusts, expanding our understanding of their contribution to ecosystem services, and providing valuable insights for ecological restoration efforts on coral islands. Full article

In drylands, microalgae dwelling in the biocrust are inevitably confronted with nitrogen deficiency and desiccation stress, despite the protection afforded by the soil biological complex. However, the environmental adaptive features and mechanisms of these microalgae remain largely unknown. In this study, we explored the adaptive changes of a biocrust-derived unicellular microalga, Vischeria sp. WL1 (Eustigmatophyceae), in the face of long-term nitrogen deficiency. Attention was focused on the alterations in cell wall properties and the associated desiccation resistance. After exposure to long-term nitrogen deficiency, the cell walls of Vischeria sp. WL1 thickened substantially, accompanied by enhanced rigidity and an improvement in desiccation resistance. In contrast, Vischeria sp. WL1 cells cultivated under nitrogen-replete conditions were highly vulnerable to desiccation stress. Additional cell wall alterations after nitrogen starvation included distinct surface sculpturing, variations in monosaccharide composition, and changes in functional groups. Collectively, this study provides valuable insights into the survival strategies of biocrust-derived microalgae in nitrogen-deficient dryland environments. Full article

Soil erosion is a serious environmental problem that leads to land degradation and ecological imbalance, thereby eliciting extensive and profound worldwide concern. Biological soil crusts (biocrusts) play a crucial role in soil stabilization; however, the underlying microbial enzymatic mechanisms remain poorly understood. The present study aimed to characterize carbonatogenic bacteria and investigate the role of their carbonic anhydrase-induced carbonate crystals in promoting soil shear strength within biocrusts. The results demonstrated a significant increase in the activity of carbonic anhydrase during biocrust formation and development (p < 0.05). A total of 35 strains exhibiting carbonic anhydrase activity were isolated from biocrusts, belonging to Actinomycetota, Bacillota, Pseudomonadota and Cyanobacteriota. The subsequent investigation revealed a positive correlation between the carbonic anhydrase activities of the strains and the shear strength during sand consolidation. Specifically, strain SCSIO19859, a type of cyanophyta, exhibited the highest carbonic anhydrase activity, of 1.50 U/mL. It produced 0.70 g/day of calcium carbonate and demonstrated a shear strength that was 6.09 times greater than that of the control group after sand consolidation for seven days of incubation under optimal conditions. X-ray diffraction and scanning electron microscope analysis revealed that SCSIO19859 produced calcite and vaterite carbonates, which significantly increased the shear strength of the sand grains (p < 0.05). This study provides evidence for the ecological function of biocrusts in promoting soil erosion resistance from the perspective of carbonatogenic bacteria-derived carbonic anhydrase. The functional strains with carbonic anhydrase obtained from this study have significant potential applications in enhancing soil erosion resistance. Full article

Biological soil crusts are important components of dryland ecosystems, showing variations in appearance, morphology, and function across developmental stages. However, the methods for recording biocrust developmental stages have not been simplified and standardized. In this study, three developmental grades for both cyanobacterial crust and moss crust were defined based on visual indicators such as color, thickness, and moss height. A field survey was conducted across three precipitation regions in northern China, during which the developmental grades of cyanobacterial and moss crusts were visually recorded. Key biocrust developmental indicators, including shear strength, penetration resistance, coverage, chlorophyll a content, and bulk density were measured for each grade. The results showed that both cyanobacterial and moss crusts could be effectively classified into three developmental grades based on these indicators, with a 90% concordance between the measured indicators and the defined grading method. This finding validated that the method could accurately reflect biocrust developmental stages while simplifying field recordings. Developmental indicators in various grades of cyanobacterial and moss crusts showed a moderate (30% < CV < 100%) to strong (CV > 100%) variation, highlighting the importance of environmental heterogeneity at the regional scale. Moreover, the grading method proved effective across varying spatial scales, highlighting its broad applicability. However, its validation across the comprehensiveness of target objects and the geographical scope remains limited. Future research should focus on expanding the grading method to include lichen crust, refining it across diverse ecosystems, and exploring the integration of advanced technologies such as hyperspectral imaging and machine learning to automate and improve the classification process. This study provides a simple and effective grading method for visually recording the developmental stages of biological soil crusts, which is useful for ecological research and field applications. Full article

Biological soil crusts are integral to Arctic ecosystems, playing a crucial role in primary production, nitrogen fixation and nutrient cycling, as well as maintaining soil stability. However, the composition and complex relationships between the diverse organisms within these biocrusts are not well studied. This study investigates how the microbial community composition within Arctic biocrusts is influenced by environmental factors along an altitudinal gradient (101 m to 314 m). Metagenomic analyses were used to provide insights into the community composition, revealing that temperature, pH, and nutrient availability significantly shaped the community. In contrast, altitude did not directly influence the microbial composition significantly. Eukaryotic communities were dominated by Chloroplastida and fungi, while Proteobacteria and Actinobacteria prevailed among prokaryotes. Cyanobacteria, particularly orders such as Pseudoanabaenales, Pleurocapsales, and Nostocales, emerged as the most abundant photoautotrophic organisms. Our findings highlight the impact of environmental gradients on microbial diversity and the functional dynamics of biocrusts, emphasizing their critical role in Arctic tundra ecosystems. Arctic biocrusts are intricate micro-ecosystems, whose structure is strongly shaped by local physicochemical parameters, likely affecting essential ecological functions. Full article

The crucial functional arbuscular mycorrhizal fungi (AMF) and diazotrophs play pivotal roles in nutrient cycling during vegetation restoration. However, the impact of managed vegetation restoration strategies on AMF and diazotroph communities remains unclear. In this study, we investigated the community structure and diversity of AMF and diazotrophs in a karst region undergoing managed vegetation restoration from cropland. Soil samples were collected from soils under three vegetation restoration strategies, plantation forest (PF), forage grass (FG), and a mixture of plantation forest and forage grass (FF), along with a control for cropland rotation (CR). The diversity of both AMF and diazotrophs was impacted by managed vegetation restoration. Specifically, the AMF Shannon index was higher in CR and PF compared to FF. Conversely, diazotroph richness was lower in CR, PF, and FG than in FF. Furthermore, both AMF and diazotroph community compositions differed between CR and FF. The relative abundance of AMF taxa, such as Glomus, was lower in FF compared to the other three land-use types, while Racocetra showed the opposite trend. Among diazotroph taxa, the relative abundance of Anabaena, Nostoc, and Rhizobium was higher in FF than in CR. Soil properties such as total potassium, available potassium, pH, and total nitrogen were identified as the main factors influencing AMF and diazotroph diversity. These findings suggest that AMF and diazotroph communities were more sensitive to FF rather than PF and FG after managed vegetation restoration from cropland, despite similar levels of soil nutrients among PF, FG, and FF. Consequently, the integration of diverse economic tree species and forage grasses in mixed plantations notably altered the diversity and species composition of AMF and diazotrophs, primarily through the promotion of biocrust formation and root establishment. Full article

Land use practices and climate change have driven substantial soil degradation across global drylands, impacting ecosystem functions and human livelihoods. Biological soil crusts, a common feature of dryland ecosystems, are under extensive exploration for their potential to restore the stability and fertility of degraded soils through the development of inoculants. However, stressful abiotic conditions often result in the failure of inoculation-based restoration in the field and may hinder the long-term success of biocrust restoration efforts. Taking an assisted migration approach, we cultivated biocrust inocula sourced from multiple hot-adapted sites (Mojave and Sonoran Deserts) in an outdoor facility at a cool desert site (Colorado Plateau). In addition to cultivating inoculum from each site, we created an inoculum mixture of biocrust from the Mojave Desert, Sonoran Desert, and Colorado Plateau. We then applied two habitat amelioration treatments to the cultivation site (growth substrate and shading) to enhance soil stability and water availability and reduce UV stress. Using marker gene sequencing, we found that the cultivated mixed inoculum comprised both local- and hot-adapted cyanobacteria at the end of cultivation but had similar cyanobacterial richness as each unmixed inoculum. All cultivated inocula had more cyanobacterial 16S rRNA gene copies and higher cyanobacterial richness when cultivated with a growth substrate and shade. Our work shows that it is possible to field cultivate biocrust inocula sourced from different deserts, but that community composition shifts toward that of the cultivation site unless habitat amelioration is employed. Future assessments of the function of a mixed inoculum in restoration and its resilience in the face of abiotic stressors are needed to determine the relative benefit of assisted migration compared to the challenges and risks of this approach. Full article

Windblown and water-induced erosion cause substantial soil losses worldwide, especially for drylands. Any sustainable management program that increases soil organic matter and improves the stability of the crustal layer could considerably enhance soil productivity and the preservation of erosion-prone land. This paper presents a laboratory investigation of cyanobacteria-inoculated medium sand and fine sand soils studied for severe runoff conditions that were simulated using an erosion function apparatus (EFA). Loosely deposited sand specimens prepared by air-pluviation were inoculated with a single native filamentous-cyanobacterium strain (investigating both Nostoc sp. and Calothrix sp.) and then incubated under high exposure to white light for 32- or 48-day periods. Well-developed bio-crusts were produced on the specimens’ top surface that achieved substantial improvements in erosion resistance, as was demonstrated for a wide range of hydraulic shear stress investigated using EFA experiments. Relative improvements in hydraulic erosion resistance were explained in terms of the nature of the cyanobacteria-developed microstructures (cyanobacteria filament infiltration of pore-void spaces and exopolysaccharide excretion), as were observed by scanning electron microscope examinations. The developed microstructure depended on the cyanobacterium strain employed and the nominal pore-void sizes that are related to the sand gradation and density state. The encouraging findings of this experimental investigation suggest a tailored approach (i.e., employing a suitable native cyanobacterium strain chosen for its compatibility with the soil’s physical properties) could lay the basis for developing a novel technology for soil protection. Full article