Search Results (28)

Eucalyptus plantation forests play an important role in the global trade balance, and have been challenged with the Eucalypt Physiological Disorder (EPD) exhibiting symptoms on barks. Despite of that, there is little information on the anatomical features of phloem and periderm associated with this disorder. Although tolerant and susceptible commercial clones exhibited similar anatomical structures, they differed in the proportions of conducting and total phloem tissue and the amount of phloem containing Calcium oxalate (CaOx) crystals. The frequency and diameter of sieve tube elements (STEs) also varied among the tested clones. The increased area of phloem with non-collapsed STE and CaOx crystals were linked to the EPD tolerant phenotype. Bark, secondary phloem, and periderm thickness were correlated with EPD scores. Structural characteristics of phloem cells is correlated with increasing stem diameter. Bark and phloem thickness exhibited significant and positive associations with EPD-tolerant clones and stem diameter, while negative correlations with EPD scores. These connections corroborate the positive impact of increasing the proportion of total phloem thickness on stem diameter growth and EPD tolerance. The present results were based on restricted, yet commercially important, Eucalyptus species (E. grandis, E. urophylla and E. grandis × E. urophylla hybrids) highlighting bark and phloem traits linked to plant growth and EPD tolerance. Full article

Tree phenotypes vary because of genotype–climate interactions, and this variation influences host selection by tree-killing bark beetles. As climate-driven bark beetle outbreaks intensify, identifying phenotypic traits that best predict resistance or susceptibility is critical. We examined genetic variation, secondary chemistry, growth rates, and climate sensitivity in interior ponderosa pine (Pinus ponderosa var. scopulorum Engelm.) at two sites in the Black Hills—Devils Tower National Monument (DETO), Wyoming, and Wind Cave National Park (WICA), South Dakota—experiencing low-moderate levels of mountain pine beetle (Dendroctonus ponderosae Hopkins) activity. Genetic structure differed between sites. At DETO, large and small trees formed a single genetic cluster, whereas at WICA, two clusters emerged, one consisting of large trees and another comprising both small and large trees. The concentrations of some terpenes also differed between sites. Compared to beetle-killed trees, surviving trees exhibited distinct lifelong growth patterns and greater sensitivity to climate. Notably, surviving trees showed significant correlations of growth with climate variables, while beetle-killed trees were relatively insensitive. Long-term responsiveness of growth to climate was a stronger predictor of tree susceptibility to beetles than responses in years just before attacks occurred. These findings suggest trees with lower sensitivity to climate may be more vulnerable to beetle attack under changing climatic conditions. Full article

Native yeasts are a promising microbial resource for the development of sustainable biorefineries. In this study, we isolated 30 yeast strains from soil, decaying wood, and tree bark in a preserved Araucaria Forest in Southern Brazil and characterized them phenotypically and taxonomically. All strains were able to grow on glucose, xylose, and cellobiose, and 50% of them could metabolize arabinose. Several isolates showed high growth rates on xylose (up to 0.47 h⁻¹) and cellobiose (up to 0.45 h⁻¹). Notably, 19 strains (63% of the analyzed yeasts) exhibited xylanase activity at 50 °C (up to 156.84 U/mL), and four strains (13%) showed significant cellulase production. β-Glucosidase activities were particularly high in permeabilized cells of CHAP-258, CHAP-277, and CHAP-278 (up to 584.33 U/mg DCW), with kinetic parameters indicating high enzymatic performance. Twelve strains (40% of the total) were classified as oleaginous, and three (10%) displayed both lipogenic and esterase activity. Lipase activity against p-nitrophenyl palmitate (pNPP) reached 55.55 U/mL in CHAP-260. Taxonomic identification revealed representatives of seven genera, including Meyerozyma, Papiliotrema, Scheffersomyces, and Sugiyamaella, with potential for biotechnological use. Overall, the biochemical diversity observed highlights the value of native yeasts from Araucaria Forests as biocatalysts for lignocellulose-based bioprocesses, particularly due to their ability to grow on pentoses, secrete hydrolytic enzymes, and accumulate lipids. Full article

The regulation of gibberellic acid 2-oxidase (GA2ox) gene expression represents a critical mechanism in the modulation of endogenous gibberellic acids (GAs) levels, thereby exerting an influence on plant height. In this context, we conducted a comprehensive genome-wide analysis of the GA2ox gene family in mango (Mangifera indica L.), a species of significant economic importance, with the aim of identifying potential candidate genes for mango dwarf breeding. Our findings delineated the presence of at least 14 members within the MiGA2ox gene family in the mango genome, which were further categorized into three subfamilies: C₁₉-GA2ox-I, C₁₉-GA2ox-II, and C₂₀-GA2ox-I. Notably, MiGA2ox12, a member of the C₁₉-GA2ox-II subfamily, exhibited substantial expression across various tissues, including roots, bark, leaves, and flowers. Through overexpression of the MiGA2ox12 gene in tobacco, a distinct dwarf phenotype was observed alongside reduced levels of GA₁ and GA₄, while the knockout line exhibited contrasting traits. This provides evidence suggesting that MiGA2ox12 may exert control over plant height by modulating GA content. Consequently, the MiGA2ox12 gene emerges as a promising candidate for facilitating advancements in mango dwarfing techniques. Full article

To explore the radial variation in wood properties of slash pine (Pinus elliottii Engelm.) during its growth process and to achieve the early prediction of these properties, our study was carried out in three slash pine harvest-age plantations in Ganzhou, Jian, and Jingdezhen, Jiangxi province of South China. Wood core samples were collected from 360 sample trees from the three plantations. SilviScan technology was utilized to acquire wood property parameters, such as tangential fiber widths (TFWs), radial fiber widths (RFWs), fiber wall thickness (FWT), fiber coarseness (FC), microfibril angle (MFA), modulus of elasticity (MOE), wood density (WD) and ring width (RD). Subsequent systematic analysis focused on the phenotypic and radial variation patterns of wood properties, aiming to establish a clear boundary between juvenile and mature wood. Based on determining the boundary between juvenile and mature wood, a regression equation was used to establish the relationship between the properties of juvenile wood and the ring ages. This relationship was then extended to the mature wood section to predict the properties of mature wood. Our results indicated significant differences in wood properties across different locations. The coefficients of variation for RD and MOE were higher than other properties, suggesting a significant potential for selective breeding. Distinct radial variation patterns in wood properties from the pith to the bark were observed. The boundary between juvenile and mature wood was reached at the age of 22. The prediction models developed for each wood property showed high accuracy, with determination coefficients exceeding 0.87. Additionally, the relative and standard errors between the measured and predicted values were kept below 10.15%, indicating robust predictability. Mature wood exhibited greater strength compared to juvenile wood. The approach of using juvenile wood properties to predict those of mature wood is validated. This method provides a feasible avenue for the early prediction of wood properties in slash pine. Full article

Glioblastomas (GBMs) are aggressive and invasive cancers of the brain, associated with high rates of tumour recurrence and poor patient outcomes despite initial treatment. Targeting cell migration is therefore of interest in highly invasive cancers such as GBMs, to prevent tumour dissemination and regrowth. One current aim of GBM research focuses on assessing the anti-migratory properties of novel or repurposed inhibitors, including plant-based drugs which display anti-cancer properties. We investigated the potential anti-migratory activity of plant-based products with known cytotoxic effects in cancers, using a range of two-dimensional (2D) and three-dimensional (3D) migration and invasion assays as well as immunofluorescence microscopy to determine the specific anti-migratory and phenotypic effects of three plant-derived compounds, Turmeric, Indigo and Magnolia bark, on established glioma cell lines. Migrastatic activity was observed in all three drugs, with Turmeric exerting the most inhibitory effect on GBM cell migration into scratches and from the spheroid edge at all the timepoints investigated (p < 0.001). We also observed novel cytoskeletal phenotypes affecting actin and the focal adhesion dynamics. As our in vitro results determined that Turmeric, Indigo and Magnolia are promising migrastatic drugs, we suggest additional experimentation at the whole organism level to further validate these novel findings. Full article

Tetranychus urticae Koch, a phytophagous mite, is one of the most significant crop pests globally. The primary method employed for controlling T. urticae involves chemical means, utilizing synthesized products, posing the risk of developing resistance. The urgency for novel strategies integrated into pest management programs to combat this mite is becoming increasingly imperative. Botanical pesticides emerge as a promising tool to forestall arthropod resistance. Among these, extracts from Rutaceae plants, abundant in bioactive specialized metabolites, have demonstrated potential as insecticides and miticides. In this study, various concentrations of alkaloidal extracts sourced from the bark of Zanthoxylum schreberi J.F.Gmel. (Rutaceae) were evaluated against T. urticae adult females. Furthermore, the extract’s combination with three distinct commercial acaricides (i.e., chlorfenapyr, cyflumetofen, and abamectin) was also assessed for this mite. Chemical characterization of the extract via LC-MS allowed for the annotation of various compounds related to ten benzylisoquinoline-derived alkaloids. The extract, both alone and in combination with commercial insecticides, yielded varying responses, inducing over 40% mortality at 2% w/w, demonstrating a 90% repellency rate at the same concentration, and exerting a moderate impact on fecundity. These treatments extended beyond phenotypic responses, delving into the biochemical effects on treated T. urticae females through an exploration of the impact on four enzymes, i.e., acetylcholinesterase (AChE), glutathione S-transferase (GST), esterases (GE), and P450-like monooxygenases (PMO). Employing consensus docking studies and in vitro enzymatic evaluations, it was discovered that the Z. schreberi-derived extract and its constituents significantly affected two key enzymes, AChE and GST (IC₅₀ < 6 µM), which were associated with the phenotypic observations of T. urticae females. The evaluation of alkaloid-rich botanicals showcases promising potential as a relevant biotechnological strategy in addressing mite-related concerns, offering a pathway toward innovative and sustainable pest management solutions. Full article

Terrestrial laser scanning (TLS) technology characterizes standing trees with millimetric precision. An important step to accurately quantify tree volume and above-ground biomass using TLS point clouds is the discrimination between timber and leaf components. This study evaluates the performance of machine learning (ML)-derived models aimed at discriminating timber and leaf TLS point clouds, focusing on eight Mediterranean tree species datasets. The results show the best accuracies for random forests, gradient boosting machine, stacked ensemble model, and deep learning models with an average F1 score equal to 0.92. The top-performing ML-derived models showed well-balanced average precision and recall rates, ranging from 0.86 to 0.91 and 0.92 to 0.96 for precision and recall, respectively. Our findings show that Italian maple, European beech, hazel, and small-leaf lime tree species have more accurate F1 scores, with the best average F1 score of 0.96. The factors influencing the timber–leaf discrimination include phenotypic factors, such as bark surface (i.e., roughness and smoothness), technical issues (i.e., noise points and misclassification of points), and secondary factors (i.e., bark defects, lianas, and microhabitats). The top-performing ML-derived models report a time computation ranging from 8 to 37 s for processing 2 million points. Future studies are encouraged to calibrate, configure, and validate the potential of top-performing ML-derived models on other tree species and at the plot level. Full article

Catalpa bungei C. A. Mey is a unique and precious multi-purpose tree species that possesses great timber-related, ornamental and medicinal values. In this study, MS, N6 and DKW were used as basic media, and different concentrations of 6-BA and NAA were added for callus induction. The induction rate and total flavonoid content of callus tissue showed that the best callus induction medium was DKW + 2.0 mg·L⁻¹ 6-BA + 0.5–1.0 mg·L⁻¹ NAA. The leaves of different bark phenotypes of C. bungei C. A. Mey and the callus tissue extracted from young leaves of C. bungei C. A. Mey were used as experimental materials to construct metabolomic profiles of widely targeted flavonoids. Based on the metabolomic databases, the predominant flavonoids were screened from the callus tissues. Eight flavonoid metabolites increased in callus, and diosmetin-7-O-rutinoside (diosmin) was the flavonoid constituent with the shortest retention time, most efficient detection and best medicinal functions among these 8. The optimal medium for callus induction was supplemented with different concentrations of elicitors (salicylic acid SA and yeast extract YE). The optimal elicitor and the amount to be added were determined by analyzing the induction rate of callus, as well as the total contents of flavonoids and diosmin. The addition of SA and YE in appropriate amounts increased the total flavonoid content in the callus, but only the addition of YE promoted the formation of diosmin in the callus. The optimal medium formulation to promote the formation of callus was DKW + 2.0 mg·L⁻¹ 6-BA + 1.0 mg·L⁻¹ NAA + 30 g·L⁻¹ sucrose + 6.8 g·L⁻¹ agar + 10 μmol·L⁻¹ SA. The medium formulation to optimally increase the content of geraniol glucoside was DKW + 2.0 mg·L⁻¹ 6-BA + 1.0 mg·L⁻¹ NAA + 30 g·L⁻¹ sucrose + 6.8 g·L⁻¹ agar + 200 mg·L⁻¹ YE. The results of the present study will provide a scientific basis for the subsequent increase in the content of the active components of the suspension cells via the addition of elicitors, and for the production of diosmin in factory settings. Full article

4,8-dihydroxy-l-tetralone (4,8-DHT) is an allelochemical isolated from the outer bark of Carya cathayensis that acts as a plant growth inhibitor. In order to explore the mechanism of 4,8-DHT inhibiting weed activity, we treated three species of Digitaria sanguinalis, Arabidopsis thaliana, and Poa annua with different concentrations of 4,8-DHT and performed phenotype observation and transcriptome sequencing. The results showed that with an increase in 4,8-DHT concentration, the degree of plant damage gradually deepened. Under the same concentration of 4,8-DHT, the damage degree of leaves and roots of Digitaria sanguinalis was the greatest, followed by Arabidopsis thaliana, while Poa annua had the least damage, and the leaves turned slightly yellow. Transcriptome data showed that 24536, 9913, and 1662 differentially expressed genes (DEGs) were identified in Digitaria sanguinalis, Arabidopsis thaliana, and Poa annua, respectively. These DEGs were significantly enriched in photosynthesis, carbon fixation, glutathione metabolism, phenylpropanoid biosynthesis, and oxidative phosphorylation pathways. In addition, DEGs were also enriched in plant hormone signal transduction and the MAPK signal pathway in Arabidopsis thaliana. Further analysis showed that after 4,8-DHT treatment, the transcript levels of photosynthesis PSI- and PSII-related genes, LHCA/B-related genes, Rubisco, and PEPC were significantly decreased in Digitaria sanguinalis and Arabidopsis thaliana. At the same time, the transcription levels of genes related to glutathione metabolism and the phenylpropanoid biosynthesis pathway in Digitaria sanguinalis were also significantly decreased. However, the expression of these genes was upregulated in Arabidopsis thaliana and Poa annua. These indicated that 4,8-DHT affected the growth of the three plants through different physiological pathways, and then played a role in inhibiting plant growth. Simultaneously, the extent to which plants were affected depended on the tested plants and the content of 4,8-DHT. The identification of weed genes that respond to 4,8-DHT has helped us to further understand the inhibition of plant growth by allelochemicals and has provided a scientific basis for the development of allelochemicals as herbicides. Full article

Seeds and bark of Garcinia kola Heckel (Clusiaceae) are popular products in West and Central Africa. Despite the tree’s economic and cultural importance, little is known about its phenotypic and genotypic variation. This study characterised the morphological and genetic diversity of G. kola in South Cameroon, searching for traits and populations that might be used for domestication. Morphological assessment and amplified fragment length polymorphism (AFLP) markers were applied to characterise diversity among geographic populations from Central and South regions, and between managed and wild trees. AFLP-SURV and analysis of molecular variance results indicated that a major part of genetic diversity is harboured within populations rather than between them. Bayesian analysis, principal component analysis and t-SNE identified three clusters where Ebolowa emerged as the transition population combining features from both regions. Trees from the South demonstrated a higher incidence of domestication-related traits, showing higher genetic diversity compared to the Central region. This suggests that individuals from the South might be more suitable for selection as “elite trees” in future breeding strategies for the species. No significant differences in phenotype and genotype were revealed between wild and managed populations, suggesting G. kola is still in the early stages of its domestication process. Full article

Antiaris africana Engler leaves have been used in Senegalese folk medicine to treat breast cancer. The present study aimed to investigate the anticancer potential of Antiaris africana Engler leaves using several human cancer cell lines. The leaves of Antiaris africana Engler were extracted in parallel with water or 70% ethanol and each extract divided into three parts by successive liquid–liquid extraction with ethyl acetate and butanol. The phytochemical components of the active extract were investigated using ultra-performance liquid chromatography-diode array detector-quadrupole time-of-flight tandem mass spectrometry (UPLC-DAD-QTOF-MS/MS). The cytotoxic and cytostatic effects of each extract, as well as their fractions, were evaluated in vitro via flow and image cytometry on different human cancer phenotypes, such as breast (MCF-7), pancreas (AsPC-1), colon (SW-620) and acute monocytic leukemia (THP-1). Both hydro-alcoholic and aqueous extracts induced strong apoptosis in MCF-7 cells. The water fraction of the hydro-alcoholic extract was found to be the most active, suppressing the cell growth of MCF-7 in a dose-dependent manner. The half maximum effective concentration (EC₅₀) of this fraction was 64.6 ± 13.7 μg/mL for MCF-7, with equivalent values for all tested phenotypes. In parallel, the apoptotic induction by this fraction resulted in a EC₅₀ of 63.5 ± 1.8 μg/mL for MCF-7, with again equivalent values for all other cellular tested phenotypes. Analysis of this fraction by UPLC-DAD-QTOF-MS/MS led to the identification of hydroxycinnamates as major components, one rutin isomer, and three cardiac glycosides previously isolated from seeds and bark of Antiaris africana Engler and described as cytotoxic in human cancer models. These results provide supportive data for the use of Antiaris africana Engler leaves in Senegal. Full article

Winemaking involves a wide diversity of microorganisms with different roles in the process. The wine microbial consortium (WMC) includes yeasts, lactic acid bacteria and acetic acid bacteria with different implications regarding wine quality. Despite this technological importance, their origin, prevalence, and routes of dissemination from the environment into the winery have not yet been fully unraveled. Therefore, this study aimed to evaluate the WMC diversity and incidence associated with vineyard environments to understand how wine microorganisms overwinter and enter the winery during harvest. Soils, tree and vine barks, insects, vine leaves, grapes, grape musts, and winery equipment were sampled along four seasons. The isolation protocol included: (a) culture-dependent microbial recovery; (b) phenotypical screening to select fermenting yeasts, lactic acid, and acetic acid bacteria; and (c) molecular identification. The results showed that during all seasons, only 11.4% of the 1424 isolates presumably belonged to the WMC. The increase in WMC recovery along the year was mostly due to an increase in the number of sampled sources. Acetic acid bacteria (Acetobacter spp., Gluconobacter spp., Gluconoacetobacter spp.) were mostly recovered from soils during winter while spoilage lactic acid bacteria (Leuconostoc mesenteroides and Lactobacillus kunkeii) were only recovered from insects during véraison and harvest. The fermenting yeast Saccharomyces cerevisiae was only isolated from fermented juice and winery equipment. The spoilage yeast Zygosaccharomyces bailii was only recovered from fermented juice. The single species bridging both vineyard and winery environments was the yeast Hanseniaspora uvarum, isolated from insects, rot grapes and grape juice during harvest. Therefore, this species appears to be the best surrogate to study the dissemination of the WMC from vineyard into the winery. Moreover, the obtained results do not evidence the hypothesis of a perennial terroir-dependent WMC given the scarcity of their constituents in the vineyard environment along the year and the importance of insect dissemination. Full article

In order to determine suitable traits for selecting high-wood-yield Korean pine materials, eleven morphological characteristics (tree height, basal diameter, diameter at breast height, diameter at 3 meter height, stem straightness degree, crown breadth, crown height, branch angle, branch number per node, bark thickness, and stem volume) were investigated in a 38-year-old Korean pine clonal trial at Naozhi orchard. A statistical approach combining variance and regression analysis was used to extract appropriate traits for selecting elite clones. Results of variance analysis showed significant difference in variance sources in most of the traits, except for the stem straightness degree, which had a p-value of 0.94. Moderate to high coefficients of variation and clonal repeatability ranged from 10.73% to 35.45% and from 0.06% to 0.78%, respectively. Strong significant correlations on the phenotypic and genotypic levels were observed between the straightness traits and tree volume, but crown breadth was weakly correlated to the volume. Four principal components retaining up to 80% of the total variation were extracted, and stem volume, basal diameter, diameter at breast height, diameter at 3 meter height, tree height, and crown height displayed high correlation to these components (r ranged from 0.76 to 0.98). Based on the Type III sum of squares, tree height, diameter at breast height, and branch number showed significant information to explain the clonal variability based on stem volume. Using the extracted characteristics as the selection index, six clones (PK105, PK59, PK104, PK36, PK28, and K101) displayed the highest Qi values, with a selection rate of 5% corresponding to the genetic gain of 42.96% in stem volume. This study provides beneficial information for the selection of multiple traits for genetically improved genotypes of Korean pine. Full article

Ostropales sensu lato is a large group comprising both lichenized and non-lichenized fungi, with several lineages expressing optional lichenization where individuals of the same fungal species exhibit either saprotrophic or lichenized lifestyles depending on the substrate (bark or wood). Greatly variable phenotypic characteristics and large-scale phylogenies have led to frequent changes in the taxonomic circumscription of this order. Ostropales sensu lato is currently split into Graphidales, Gyalectales, Odontotrematales, Ostropales sensu stricto, and Thelenellales. Ostropales sensu stricto is now confined to the family Stictidaceae, which includes a large number of species that are poorly known, since they usually have small fruiting bodies that are rarely collected, and thus, their taxonomy remains partly unresolved. Here, we introduce a new genus Ostropomyces to accommodate a novel lineage related to Ostropa, which is composed of two new species, as well as a new species of Sphaeropezia, S. shangrilaensis. Maximum likelihood and Bayesian inference analyses of mitochondrial small subunit spacers (mtSSU), large subunit nuclear rDNA (LSU), and internal transcribed spacers (ITS) sequence data, together with phenotypic data documented by detailed morphological and anatomical analyses, support the taxonomic affinity of the new taxa in Stictidaceae. Ancestral character state analysis did not resolve the ancestral nutritional status of Stictidaceae with confidence using Bayes traits, but a saprotrophic ancestor was indicated as most likely in a Bayesian binary Markov Chain Monte Carlo sampling (MCMC) approach. Frequent switching in nutritional modes between lineages suggests that lifestyle transition played an important role in the evolution of this family. Full article