Search Results (95)

The phytoaccumulation of Fe, Mn, Cu, Zn, and Pb in Tilia cordata flowers and soils from six locations with varying degrees of anthropopressure in Bydgoszcz city and its surroundings (Poland) was assessed. Additionally, metal concentrations and soil enzymatic activity were analyzed. Enrichment Factor analysis revealed significant Zn enrichment at only one locality, supported by a geoaccumulation index value indicating moderate soil pollution. Total metal content in soils correlated with total organic carbon (TOC), while total iron content correlated with the clay fraction (<0.002 mm). Metal concentrations were comparable to the geochemical background levels for soils in Poland. Assessment of total metal contents in the topsoil surface layer from the six locations indicated that concentrations did not exceed permissible limits established by applicable legislation. The study showed that sampling locations influenced the activities of dehydrogenase (DHA), fluorescein diacetate hydrolysis (FDA), β-glucosidase (GL), and arylsulfatase (AR), and these activities correlated more strongly with pedogenic factors than with metal content. No elevated metal levels were detected in the dry mass of T. cordata flowers. Lead content did not exceed 10 mg·kg⁻¹ dry matter, in accordance with World Health Organization (WHO) recommendations. Continued monitoring of trace element levels in soils and T. cordata flowers, particularly in urban environments, is advisable. Full article

Snake venoms contain numerous toxic proteins, but low-abundance proteins often remain uncharacterized due to identification challenges. This study employs a bioinformatics approach to identify and structurally model low-abundance proteins from the venom gland transcriptomes of Bothrops asper and Bothrops jararaca. Using tools such as tblastn, Jalview, and CHIMERA, we analyzed sequences and structural features of proteins including arylsulfatase, CRISP (Cysteine-Rich Secretory Protein), von Willebrand factor type D (vWFD), and dihydroorotate dehydrogenase (DHODH), and identified potential new isoforms of SVMP-PIIIb (Ba_1) and botrocetin in B. asper. Protein models were generated with AlphaFold2, compared with crystallized structures from the Protein Data Bank (PDB), and validated using Procheck, ERRAT, and Verify3D. Conserved motifs and domains were annotated through Pfam and InterPro, revealing structural elements that suggest possible roles in venom physiology and toxicity. These findings emphasize the potential of computational biology to characterize structurally relevant but experimentally inaccessible venom proteins, and to lay the groundwork for future functional validation. Full article

Pine wilt disease (PWD) poses a significant threat to pine forest health, making sanitation thinning of infected trees and cultivation of disease-resistant pine stands crucial measures for forest ecosystem restoration. To date, limited studies have systematically investigated how post-sanitation planting of pine-wilt-disease-resistant Pinus species affects soil microbiome, especially regarding bacterial and fungal diversity characteristics, functional succession patterns, and community assembly processes. In this study, we performed a comparative analysis of soil microbial community characteristics and biochemical properties between experimental plots subjected to sanitation thinning and those replanted with disease-resistant pine species. The results indicated that compared to the sanitation-thinned experimental plot, the disease-resistant experimental plots (Pinus taeda experimental plot and Pinus thunbergii experimental plot) exhibited significantly higher activities of β-glucosidase (S-β-GC), N-acetyl-β-D-glucosidase (S-NAG), and soil arylsulfatase (S-ASF). Compared with the sanitation logging stands, our analysis revealed that the Pinus taeda experimental plot and Pinus thunbergii experimental plot exhibited significantly higher fungal community evenness (OTUs), greater species abundance (OTUs), and more unique fungal taxa. Furthermore, the edaphic properties—specifically soil moisture content (SMC), pH levels, and total potassium (TK)—significantly influenced the structures of soil bacterial and fungal communities. Compared to the sanitation-thinned experimental plot, wood saprotrophic fungi and ectomycorrhizal fungi exhibited increased abundance in both the P. taeda experimental plot and Pinus thunbergii experimental plot. Furthermore, the null models indicated that both the P. taeda experimental plot and P. thunbergii experimental plot enhanced the undominated processes of bacteria and fungi. In summary, our data elucidate the differences in bacterial and fungal responses between pine forests undergoing thinning due to infected trees and those cultivated for disease resistance. This deepens our understanding of microbial functions and community assembly processes within these ecosystems. Full article

Defective CFTR (cystic fibrosis transmembrane conductance regulator) is pathognomonic for cystic fibrosis (CF), which is characterized by an accumulation of tenacious secretions in pulmonary airways, as well as by abnormal ductal secretions in other organs, including the pancreas and prostate. The advent of CFTR modulating therapies has markedly improved the clinical status and survival of CF patients, primarily attributable to improved lung function. Previous publications reported that a decline in CFTR function was associated with a decline in activity and expression of the enzyme N-acetylgalactosamine-4-sulfatase (Arylsulfatase B; ARSB). ARSB removes 4-sulfate groups from N-acetylgalactosamine 4-sulfate residues and is required for the degradation of chondroitin 4-sulfate (chondroitin sulfate A) and dermatan sulfate, two sulfated glycosaminoglycans which accumulate in cystic fibrosis. Declines in both ARSB and in CFTR have been associated with the development of malignancies, including prostate malignancy. The experiments in this report show that similar effects on invasiveness are present when either CFTR or ARSB is inhibited in human prostate epithelial cells, and these effects resemble findings detected in malignant prostate tissue. The effects of CFTR inhibition are reversed by treatment with recombinant human ARSB in prostate cells. These results suggest that treatment by rhARSB may benefit patients with cystic fibrosis and prostate cancer. Full article

Metachromatic leukodystrophy (MLD) is a rare inherited disorder of lysosomal storage, caused by a deficiency in the arylsulfatase A (ARSA) enzyme, leading to toxic accumulation of sulfatides, which progressively impair motor and cognitive function. MLD is a candidate for inclusion in newborn screening (NBS) programs, due to the narrow pre-symptomatic window for effective therapeutic intervention. We set up a prospective pilot NBS program for MLD in Tuscany, based on a two-step approach. The first-tier test quantified four sulfatides; if levels exceeded the cut-off, we performed the second-tier test by measuring ARSA activity on the same neonatal dried blood spot (DBS). We performed the first-tier test on 42,262 newborns over two years and the second-tier test on residual neonatal DBS from 90 of them (0.21%). We recalled 10 newborns (0.02%) for an additional DBS, due to insufficient residual material for a second-tier test (n = 4) or to low ARSA activity (n = 6). We found normal ARSA activity in all new DBS and identified no new cases of MLD. Retrospective analysis of eight neonatal and fifteen non-neonatal DBS from patients with genetically confirmed MLD showed that the algorithm accurately identified MLD patients. This diagnostic algorithm proved feasible and accurate for early detection of MLD in prospective NBS. Full article

Fallow is a practice in which the soil is left uncultivated for a period of time and is used less due to the pressure on agricultural land, which impairs soil regeneration. The cultivation of legumes, such as peanuts, is a viable alternative that leads to an improvement in the soil chemistry and grain capacity. Despite their importance, there are gaps regarding the use of peanuts for land reclamation and their importance for enzymatic activity in the soil. Therefore, the aim of this study was to evaluate the effects of straw incorporation and peanut cultivation in fallow land on the soil’s chemical and biological quality and to determine whether the introduction of these elements contributes to an improvement in the soil fertility parameters and enzymatic activity. To achieve these objectives, experimental plots were established in fallow soils with different amounts of straw (0; 5 and 10 t ha⁻¹), with and without herbicide application and with peanut incorporation. The soil chemistry and enzymatic activity, plant biometrics and productivity were evaluated. The results showed that the straw treatment resulted in better plant development and increased productivity by up to 80%. The pH, soil organic matter, soil organic carbon, P, K, sum of bases and cation exchange capacity variables increased significantly with the presence of the plant and the incorporation of straw compared to uncovered soil, by 10%, 86%, 80%, 68%, 42%, 38% and 27%, respectively. For the enzymatic activity, the values showed that straw and peanut management affects the higher activity of β-glucosidase and arylsulfatase, with differences of 75 and 74% compared to the control. The incorporation of straw and peanuts in fallow land improves the chemical and biological quality of the soil. The use of herbicides has no effect on the soil dynamics or peanut development in the presence of straw and the presence of peanuts provides a better soil quality index and increases the β-glucosidase and arylsulfatase activity in the soil. Full article

Microbial inoculants are vital for promoting plant growth and facilitating the ecological restoration of degraded forested regions near abandoned mine sites. However, the direct application of liquid microbial inoculants is often challenging due to low microbial activities and poor transport efficiencies, which limit their effectiveness in complex soil environments. To tackle these challenges, this study utilized immobilized microbial technology to evaluate the effectiveness of solid microbial inoculants sourced from peat (P), biochar (BC), and spent mushroom substrates (SMSs) in enhancing the soil’s multifunctionality and promoting plant growth. Specifically, this research sought to assess the effectiveness of solid microbial inoculants derived from peat (P), biochar (B), and spent mushroom substrates (SMSs) in enhancing soil multifunctionality and promoting plant growth in nutrient-deficient soils that were affected by abandoned mine sites. We aimed to evaluate the performance of different solid microbial inoculants in improving the soil’s nutrient content and enzyme activities. A 24-week pot experiment was conducted using Medicago sativa L. in nutrient-poor soil. The results demonstrated that, in contrast to peat and biochar, SMSs effectively interacted with microbial inoculants and significantly improved the nutrient content and enzyme activities of nutrient-deficient soil. It was noted that β-1,4-glucosidase (BG), invertase, β-1,4-N-acetylglucosaminidase (NAG), urease, and soil available phosphorus increased by 204%, 405%, 118%, 198%, and 297%, respectively. The soil’s multifunctionality improved by 320% compared with the CK, and the plant biomass also increased significantly. Further, our random forest analysis indicated that the soil available phosphorus, ammonium nitrogen, total nitrogen, total carbon content, arylsulfatase, pH, total phosphorus, NAG, and BG were key environmental factors that induced changes in plant biomass. These findings highlighted the potential of SMSs as an effective carrier for immobilized microbial inoculants, which provides a sustainable approach for the restoration of forest soils surrounding abandoned mine sites, as well as a promising avenue for the valorization of agricultural waste. Full article

Mining activity severely degrades soil, increases heavy metal contamination, and hinders ecological recovery. Arbuscular mycorrhizal fungi (AMF) offer a promising strategy for restoration, but their use in Fabaceae plants, especially in mine-degraded soils, remains underexplored. This study evaluated AMF inoculation effects on soil enzymes and Mimosa caesalpiniaefolia growth in Scheelite-mining-degraded soil. In a 10-weeks greenhouse experiment, plants were grown with different AMF species (Gigaspora margarita, Acaulospora foveata, Rhizoglomus clarum, and Mix—a combination of the three species) and without inoculation. Growth parameters, seedling quality, mycorrhizal attributes, enzymatic activity, and stoichiometry were assessed. Inoculated plants showed a greater growth compared with the control. The highest spore abundances occurred in Mix (2820), R. clarum (2261), and A. foveata (2318), with the mycorrhizal colonization highest in Mix (25.78%) and R. clarum (25.70%). The Dickson quality index was higher in R. clarum and A. foveata. The enzymatic activity varied compared with the control: β-glucosidase was higher in Mix (+62%) and A. foveata (+46%); arylsulfatase and urease increased in all AMF treatments; and acid phosphatase was highest in R. clarum (+121%). A stoichiometry and vector analysis indicated a lower P limitation in Mix and A. foveata, reflecting the trade-off between P availability and symbiotic costs. These findings highlight the biotechnological potential of AMF, particularly Mix and R. clarum, in enhancing the M. caesalpiniaefolia growth and soil enzymatic activity in mining-degraded areas. Full article

Iron ore extraction can lead to significant environmental degradation, particularly due to the generation of tailings during the beneficiation process. This issue was highlighted by the B1 dam collapse in Brumadinho, Brazil, in 2019. Therefore, the study and monitoring of affected areas is essential to assess soil quality throughout the rehabilitation process, whether through natural recovery or active rehabilitation practices. Microbial indicators can serve as valuable tools to track the recovery of these areas, given their high sensitivity and rapid response to environmental changes. The aim of this study was to evaluate soil microbial indicators, such as enzyme activity, microbial biomass carbon, microbial basal respiration and microbial diversity, and to select microbial approaches for monitoring the area affected by mining tailings in Brumadinho. The results indicated that the reference area initially outperformed the affected area on all evaluated bioindicators, highlighting environmental stress in the affected zone. Over the course of the study, the two areas began to show greater similarity, suggesting a natural recovery of the soil together with the return of natural vegetation. Indicators such as microbial carbon biomass went from values close to 50 mg of C Kg of soil⁻¹ in the affected area, to around 200, statistically equal to the reference. qCO₂ also varied in the affected area to values statistically equal to those of the reference over time, variated in the first collection to 0.25 mg of C-CO₂ mg of C⁻¹ h⁻¹ in the affected area against 0.1 in the reference area; in the last collection, both areas presented values close to 0.2. Enzymatic activity had superior values in the reference area about the affected area, being urease, and arylsulfatase more sensitive to show differences between areas over time. The metataxonomic data again revealed indicator species for each environment, including genera such as Bacillus, Mycobacterium, Acidibacter, and Burkholderia representative of the reference, and the genera Ramlibacter, Sinomonas, Psedarthrobacter, and Knoellia indicators of the affected area. By the end of this study, the applicability of microbial indicators for monitoring soil microbiota and its ecosystem services was successfully demonstrated. In addition, specific microbial indicators were proposed for monitoring areas affected by iron mining tailings. Full article

Insectary plants, such as sweet alyssum, coriander, and white mustard, are well known for their traits that attract beneficial insects, allowing them to protect crops from pests. The aim of the study was to analyze the compounds that are important in the antioxidant response, such as malondialdehyde, ascorbic acid, proline, total phenolics, and total flavonoids, as well as the content of elements, including macroelements (K, Mg, Na, Ca, P, and S) and heavy metals (Cd, Cu, Zn, Pb, Ni, Mn, and Fe) in broad bean plants. These plants were grown in field conditions as the main protected plant alongside a mixture of three insectary plants at different proportions of the individual components. The soil was analyzed in terms of the above-mentioned elements, as well as in terms of its enzymatic activity (arylsulfatase, β-glucosidase, dehydrogenase, FDA (fluorescein diacetate), and acid phosphatase). The introduction of insectary plant mixtures did not cause major changes in the content of the elements in the soil. The changes in the content of elements in broad bean leaves depended on the type of element and the proportion of individual components in the companion plant mixture. However, a general trend of increasing macronutrient content was observed, influenced by the presence of companion plants. All types of companion plant mixtures used enhanced the activity of FDA, while the mixture with 50% sweet alyssum additionally caused an increase in arylsulfatase activity (more than 2 fold). The companion plants improved the physiological condition of the protected plant, which was reflected in the reduced content of proline and total flavonoids. Considering the response of the protected plant to the proposed intercropped plant mixtures and their effect on broad bean growth, it appears that the most suitable mixtures are those with an equal share of all three plant species or a mixture with a predominance of sweet alyssum. Full article

The interaction of microorganisms and their enzyme activity is one of the key indicators for a comprehensive measurement of soil health. The aim of this study was to determine significant correlations between different soil microorganisms and enzyme activities of β-glucosidase, N-acetyl-glucosaminidase, urease, arylamidase, phosphatase, acid phosphatase, alkaline phosphatase, and arylsulfatase after supplementation with standard fertilizer, spent mushroom substrate and composed fertilizer in soils from conventional–integrated, organic and biodynamic farming. Samples were grouped according to the farming system and fertilization for all seasons. The biodynamic farm was the least affected by the different fertilizations, except for standard fertilization. Standard fertilizer caused negative correlations between the actinomycetes and the arylsulfatase in organic and biodynamic farms. The same fertilization affected the actinomycetes/phosphatase relationship differently, regardless of the basic soil structure. Actinomycetes correlated positively with acid phosphatase and urease in conventional–integrated and biodynamic farms after spent mushroom substrate, respectively. Arylamidase activity in relation to total microorganisms responded to fertilization with standard fertilizer and spent mushroom substrate independently of the basic soil structure. Fertilization can influence the soil microbe/enzyme relationships in different soils. Regardless of the basic soil structure, some of these relationships could be important indicators for further studies. Full article

Previous proteomic studies of viperid venom revealed that it is mainly composed of metalloproteinases (SVMPs), serine proteinases (SVSPs), phospholipase A2 (PLA2), and C-type lectins (CTLs). However, other proteins appear in minor amounts that affect prey and need to be identified. This study aimed to identify novel toxic proteins in the venom gland transcriptome of Bothrops asper and Bothrops jararaca, using data from NCBI. Bioinformatics tools were used to assemble, identify, and compare potentially novel proteins in both species, and we performed functional annotation with BLASTX against the NR database. While previous assemblies have been performed for B. jararaca, this is the first assembly of the B. asper venom gland transcriptome. Proteins with potentially novel functions were identified, including arylsulfatase and dihydroorotate dehydrogenase, among others, that could have implications for venom toxicity. These results suggest that the identified proteins may contribute to venom toxic variation and provide new opportunities for antivenom research. The study improves the understanding of the protein composition of Bothrops venom and suggests new possibilities for the development of treatments and antivenoms. Full article

Phosphatases are enzymes that catalyze the hydrolysis of phosphate esters. They play critical roles in diverse biological processes such as extracellular nucleotide homeostasis, transport of molecules across membranes, intracellular signaling pathways, or vertebrate mineralization. Among them, tissue-nonspecific alkaline phosphatase (TNAP) is today increasingly studied, due to its ubiquitous expression and its ability to dephosphorylate a very broad range of substrates and participate in several different biological functions. For instance, TNAP hydrolyzes inorganic pyrophosphate (PP_i) to allow skeletal and dental mineralization. Additionally, TNAP hydrolyzes pyridoxal phosphate to allow cellular pyridoxal uptake, and stimulate vitamin B6-dependent reactions. Furthermore, TNAP has been identified as a key enzyme in non-shivering adaptive thermogenesis, by dephosphorylating phosphocreatine in the mitochondrial creatine futile cycle. This latter recent discovery and others suggest that the list of substrates and functions of TNAP may be much longer than previously thought. In the present review, we sought to examine TNAP within the alkaline phosphatase (AP) superfamily, comparing its sequence, structure, and evolutionary trajectory. The AP superfamily, characterized by a conserved central folding motif of a mixed beta-sheet flanked by alpha-helices, includes six subfamilies: AP, arylsulfatases (ARS), ectonucleotide pyrophosphatases/phosphodiesterases (ENPP), phosphoglycerate mutases (PGM), phosphonoacetate hydrolases, and phosphopentomutases. Interestingly, TNAP and several ENPP family members appear to participate in the same metabolic pathways and functions. For instance, extra-skeletal mineralization in vertebrates is inhibited by ENPP1-mediated ATP hydrolysis into the mineralization inhibitor PP_i, which is hydrolyzed by TNAP expressed in the skeleton. Better understanding how TNAP and other AP family members differ structurally will be very useful to clarify their complementary functions. Structurally, TNAP shares the conserved catalytic core with other AP superfamily members but has unique features affecting substrate specificity and activity. The review also aims to highlight the importance of oligomerization in enzyme stability and function, and the role of conserved metal ion coordination, particularly magnesium, in APs. By exploring the structural and functional diversity within the AP superfamily, and discussing to which extent its members exert redundant, complementary, or specific functions, this review illuminates the evolutionary pressures shaping these enzymes and their broad physiological roles, offering insights into TNAP’s multifunctionality and its implications for health and disease. Full article

The aim of this study was to assess the effect of Pseudomonas fluorescens (P) application on isofetamid (IS) dissipation; the number of specific genes of archaea, bacteria and ammonia-oxidizing bacteria (AOB); and the activity of β-Glucosidase, phosphomonoesterase, N-acetyl-glucosaminidase and arylsulfatase. It was observed that the IS concentration was lower in the P+IS than in IS throughout the entire study period, which indicates the potential of P. fluorescens to decompose isofetamid faster. IS+P application significantly influenced N-acetyl-glucosaminidase, arylsulfatase and phosphomonoesterase activity in soil compared to the control by approximately 29%, 72% and 6.5%, respectively. Moreover, it was observed that on day 21 in IS+P, the number of bacterial genes was significantly higher than in the control and IS and than on day 1, by 10% and 20%, respectively. On day 21, the number of archaea was significantly higher in all variants and ranged from 3.61 (control) to 6.88 log₁₀ gene copies/g dm (IS+P). Correlation analysis showed a positive correlation between IS and TOC, while there was a negative correlation between IS and β-Glu and the number of archaea and AOB genes. The tested strain has the potential to be a biofertilizer and an agent in the bioremediation of contaminated soils. Full article

Herbicides are the most widely used agrochemicals in crop protection, which has led to serious environmental pollution around the world, including soil ecosystems. It is important to look for new solutions that lead to an improvement in soil quality, even if only through the use of hydrogels. The aim of this study was therefore to determine the effect of sodium alginate on the microbiological and biochemical properties of sulcotrione-treated soil. It was found that both the herbicide and the sodium alginate had a significant effect on the soil environment. An amount of 10 g kg⁻¹ of sodium alginate was applied to the soil, while sulcotrione was applied to the soil in the following amounts: 0.00 (C), 0.200 (R), 0.999 (5R), and 9.999 mg kg⁻¹ (50R). Sulcotrione stimulated the activity of dehydrogenases, catalase, arylsulfatase, and β-glucosidase and inhibited the activities of alkaline phosphatase, acid phosphatase, and urease as well as the proliferation of organotrophic bacteria, actinobacteria, and fungi. This caused an increase in the colony development index (CD) of organotrophic bacteria and fungi and decreased the colony development index value of actinobacteria. It also increased the value of the ecophysiological diversity index (EP) of fungi. The addition of sodium alginate to the soil increased the numbers of organotrophic bacteria, actinobacteria, and fungi as well as the activities of dehydrogenases, catalase, urease, alkaline phosphatase, and arylsulfatase. The hydrogel had different effects on β-glucosidase activity. Acid phosphatase showed a significant decrease in activity after the addition of sodium alginate to the soil. Under the influence of sodium alginate, there was an increase in the index of colony development of actinobacteria and fungi, while there were decreases in organotrophic bacteria and the index of ecophysiological diversity of actinobacteria and fungi. The proliferation of microorganisms and the enzymatic activity of the soil changed over time both in soil enriched with sodium alginate and without its addition. This study may be useful for evaluating the effects of sulcotrione on the microbiological and biochemical properties of soil and the effectiveness of sodium alginate in improving the quality of soil exposed to sulcotrione. Full article