Search Results (72)

Anaerobic digestion (AD) has long been valued for producing a biogas–digestate pair, yet its profitability is tightening. Next-generation AD biorefineries now position syngas both as a supplementary feedstock and as a springboard to capture high-value intermediates, hydrogen (H₂) and volatile fatty acids (VFA). This review dissects how complex natural consortia “decide” between hydrogenogenesis and acetogenesis when CO, H₂, and CO₂ co-exist in the feedstocks, bridging molecular mechanisms with process-scale levers. The map of the bioenergetic contest between the biological water–gas shift reaction and Wood–Ljungdahl pathways is discussed, revealing how electron flow, thermodynamic thresholds, and enzyme inhibition dictate microbial “decision”. Kinetic evidence from pure and mixed cultures is integrated with practical operating factors (gas composition and pressure, pH–temperature spectrum, culture media composition, hydraulic retention time, and cell density), which can bias consortia toward the desired product. Full article

Blastocystis, a common intestinal protozoan in humans, is associated with gastrointestinal disorders, irritable bowel syndrome, urticaria, and colorectal cancer. Its genetic diversity and potential for treatment resistance make it a focus of ongoing research. This study evaluated the in vitro antiprotozoal activity of a postbiotic derived from Pediococcus acidilactici as a natural alternative treatment. P. acidilactici cultures were grown in MRS broth under anaerobic conditions, and the postbiotic was collected and characterized for pH, yield, organic acid composition, and phenolic compound content. Human isolates of Blastocystis subtypes ST1 and ST3 were cultured in Jones’ medium and exposed to varying postbiotic concentrations for 72 h. Viability was assessed microscopically. The cytotoxic effect of the postbiotic-derived P. acidilactici was evaluated by investigating its impact on the viability of HT-29 cells using the Cell Counting Kit 8. The postbiotic showed a 7% yield and a pH of 4.52 ± 0.11. It contained seven different organic acids, predominantly lactic acid, and eleven phenolic compounds, with naringin as the most abundant. At 4.38 mg/mL, the postbiotic achieved over 94% inhibition and 100% inhibition at 8.75 mg/mL and above. A pH analysis confirmed that the inhibition was independent of the culture medium acidity. Cell viability was not affected at the postbiotic concentration showing 100% antiprotozoal activity (8.75 mg/mL). These findings suggest that the P. acidilactici postbiotic is effective on a mixed culture of ST1 and ST3 subtypes and holds promise as a safe, natural antiprotozoal agent. Further in vivo studies are needed to confirm this. Full article

Electro-fermentation (EF) is an emerging bioprocess with the ability to regulate the metabolism of electrochemically active microorganisms. In various fermentation processes, electrodes perform either as an electron acceptor or donor, facilitating the formation and movement of electrons and protons. The bioelectric activity created by external electrodes enhances the metabolic reactions, resulting in a higher yield of value-added chemicals. The conventional fermentation process has a number of limitations in terms of usability and economic feasibility, whereas electro-fermentation presents a hybrid technology, minimizing redox instabilities and enhancing the metabolic process in general to achieve increased product production and a higher biomass yield. Electrochemically active microorganisms such as Geobacter and Shewanella species can carry out the exchange of electrons with electrodes directly or indirectly by using electron mediators. Furthermore, the integration of microbial fuel cells (MFCs) with microbial electrolysis cells (MECs) precludes the need for external manipulation of the fermentation system as the required change in electrochemical gradient is provided by the MFC counterpart. The major beneficial aspects of electro-fermentation include its role as a potential tool for enhancing the production of value-added compounds. The mixed-culture system clearly had a favorable impact on the synthesis of butyric acid from rice straw. Furthermore, cathodic electro-fermentation (CEF) exhibited benefits over anaerobic fermentation, influencing NADH/NAD⁺, enabling a higher product titer, and reducing the accumulation of byproducts. Hence, in this review, we emphasize the importance of electro-fermentation over conventional fermentation for biofuel and biochemical production, covering its fundamentals, interactions, types, future challenges, and ability to provide several benefits to boost the fermentation process, such as the process efficiency and product yield, on an industrial scale. Full article

This study aimed to investigate the effects of different storage times of the mixed inoculum on in vitro rumen fermentation characteristics, microbial diversity, and community composition. The experiment was divided into five groups, with mixed inoculum composed of fresh rumen fluid and culture medium being stored at 39 °C for 0 h (H0), 12 h (H12), 24 h (H24), 36 h (H36), and 48 h (H48). After 48 h of in vitro fermentation, the fermentation fluid was collected to assess rumen fermentation characteristics and microbial community composition. The H24 group showed higher total gas production, ammoniacal nitrogen levels, and total volatile fatty acids, as well as higher concentrations of individual volatile fatty acids except propionate, compared to the H0 and H48 groups (p < 0.05). The Shannon and Simpson evenness indices were significantly higher in the H0, H12, and H24 groups than in the H48 group (p < 0.05). A total of nine phyla and sixteen genera involved in starch and fiber degradation were found to be more abundant in the H24 or H48 groups (p < 0.05). Moreover, nine predicted metabolic pathways were observed to be significantly enriched in either the H24 or H48 group (p < 0.05). Both principal coordinates analysis (PCoA) and non-metric multidimensional scaling (NMDS) analysis revealed distinct clustering patterns among the H0, H12, H24, H36, and H48 groups, and analysis of similarities (ANOSIM) confirmed these significant differences (R = 1.00, p < 0.05). This study demonstrates that the storage time of mixed inoculum influences rumen fermentation characteristics and microbial community composition in a time-dependent manner. It is recommended to use a mixed inoculum that has been stored within 24 h in an anaerobic environment at 39 °C for in vitro rumen fermentation tests. This study offers valuable microbial insights into the storage strategies for mixed inoculum, thereby improving the methodologies for variable control in in vitro rumen fermentation techniques. Full article

The anaerobic digestion (AD) of livestock blood represents a sustainable solution for the management of waste generated by the meat processing industry while simultaneously generating renewable energy. The improper treatment of livestock blood, which is rich in organic matter and nutrients, can result in environmental risks such as water pollution, soil degradation, and greenhouse gas emissions. This review examines a range of AD strategies, with a particular focus on technological advances in reactor design, pretreatment, and co-digestion, with the aim of optimizing process efficiency. While the high protein content of blood has the potential to enhance biogas production, challenges such as ammonia inhibition and process instability must be addressed. Innovations such as bio-carriers, thermal pretreatment, and co-digestion with carbon-rich substrates have demonstrated efficacy in addressing these challenges, resulting in stable operation and enhanced methane yields. The advancement of AD technologies is intended to mitigate the environmental impact of livestock blood waste and facilitate the development of a circular bioeconomy. Furthermore, the possibility of utilizing slaughterhouse blood for the recovery of valuable products, including proteins, heme iron, and bioactive peptides, was evaluated with a view to their potential applications in the pharmaceutical and food industries. Furthermore, the potential of utilizing protein-rich blood as a substrate for mixed culture fermentation in volatile fatty acid (VFA) biorefineries was explored, illustrating its viability in biotechnological applications. Full article

Persistent organic pollutants (POPs), including organochlorine pesticides, polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polychlorinated dibenzo-p-dioxins, and polychlorinated dibenzo-p-furans, pose significant hazards to the environment and living organisms. This concise review aims to consolidate knowledge on the biological processes involved in removing POPs from wastewater, an area less explored compared to conventional physico-chemical methods. The focus is on the potential of various aerobic and anaerobic microorganisms, fungi, and bacteria for efficient bioremediation, mitigating or eradicating the deleterious effects of these chemicals. The review scrutinizes individual bacterial strains and mixed cultures engaged in breaking down persistent organic pollutants in water, highlighting promising results from laboratory investigations that could be scaled for practical applications. The review concludes by underscoring the opportunities for exploring and advancing more sophisticated bioremediation techniques and optimized bioreactors. The ultimate goal is to enhance the efficiency of microbial-based strategies, implicitly reducing the environmental impact of persistent chemicals. Full article

Sour beers play an important role in the brewing market, and their production has been growing exponentially. In light of this, six microorganisms directly related to this class of beer were studied, and the fermentation behavior of six strains used in the past for traditional commercial Berliner Weisse beer production was monitored. The microorganisms used were Lactobacillus brevis, Lactobacillus parabrevis, Brettanomyces bruxellensis, and Brettanomyces anomalus and two strains of Saccharomyces cerevisiae. The six microorganisms were selected in a previous work, and a comparison between single and mixed fermentations was carried out via daily measurements of the fermentation parameters like pH, extract, and cell count during 22 days. The ability to isolate a specific microorganism from a mixed culture was investigated using three commonly used nutrient media and aerobic/anaerobic growth conditions. Both Lactobacillus and Brettanomyces could be isolated; however, the conditions imposed were not sufficient in order to isolate Saccharomyces. Fermentations carried out with LAB and Brettanomyces showed a decrease in Lactobacillus growth if compared to pure fermentations, but no influence on the growth of Brettanomyces could be perceived. In general, fermentations carried out in the presence of Saccharomyces were dominated by this yeast. Its quick growth seems to be responsible for the high end pH values observed as well as the decrease in cell growth for both LAB and Brettanomyces. A decrease in the cell viability of Saccharomyces was followed by an increased growth of the other microorganisms involved, possibly meaning that the molecules released through apoptosis are used by both LAB and Brettanomyces as a valuable nutrient source. The volatile compound concentrations of the first group were higher in fermentations with Saccharomyces, whereas esters’ concentration was higher in fermentations carried out only with Brettanomyces and Lactobacillus. Furthermore, understanding how these microorganisms interact during the fermentation process can help brewers better control production and ensure the consistency in the quality of the final product. The end pH values and acidity reached levels acceptable for Berliner Weisse beer. This innovative approach certainly contributes to the evolution and refinement of the art of brewing. Full article

Enhanced denitrification has been reported under weak electric fields. However, it is difficult to investigate the mechanism of enhanced denitrification due to the complex interspecific interactions of mixed-culture systems. In this study, Pseudomonas stutzeri, capable of denitrification under anaerobic conditions, was selected for treating low COD/N (2.0, ratio between concentration of chemical oxygen demand and NO₃⁻-N) artificial wastewater under constant external voltages of 0.2, 0.4, and 0.6 V. The results revealed that P. stutzeri exhibited the highest efficiency in nitrate reduction at 0.2 V. Moreover, the maximum nitrate removal rate was 15.96 mg/(L·h) among the closed-circuit groups, 19.39% higher than that under the open-circuit group. Additionally, a notable reduction in nitrite accumulation was observed under weak electric fields. Enzyme activity analysis showed that the nitrate reductase activities were significantly increased among the closed-circuit groups, while nitrite reductase activities were inhibited. Transcriptomic analysis indicated that amino acid metabolism, carbohydrate metabolism, and energy metabolism were increased, enhancing the resistance of P. stutzeri to environmental stress and the efficiency of carbon source utilization for denitrification. The current study examined the impacts of weak electric fields on enzyme activities and microbial metabolic pathways and offers valuable insights into the mechanism by which denitrification is enhanced by weak electric fields. Full article

Rice straw is not easy to decompose, it takes a long time to compost, and the anaerobic bacteria involved in the decomposition process produce a large amount of carbon dioxide (CO₂), indicating that applications for rice straw need to be developed. Recycling rice straw in agricultural crops is an opportunity to increase the sustainability of grain production. Several studies have shown that the probiotic population gradually decreases in the soil, leading to an increased risk of plant diseases and decreased biomass yield. Because the microorganisms in the soil are related to the growth of plants, when the soil microbial community is imbalanced it seriously affects plant growth. We investigated the feasibility of using composted rice stalks to artificially cultivate microorganisms obtained from the Oryza sativa-planted environment for analyzing the mycobiota and evaluating applications for sustainable agriculture. Microbes obtained from the water-submerged part (group-A) and soil part (group-B) of O. sativa were cultured in an artificial medium, and the microbial diversity was analyzed with internal transcribed spacer sequencing. Paddy field soil was mixed with fermented paddy straw compost, and the microbes obtained from the soil used for O. sativa planting were designated as group-C. The paddy fields transplanted with artificially cultured microbes from group-A were designated as group-D and those from group-B were designated as group-E. We found that fungi and yeasts can be cultured in groups-A and -B. These microbes altered the soil mycobiota in the paddy fields after transplantation in groups-D and -E compared to groups-A and -B. Development in O. sativa post treatment with microbial transplantation was observed in the groups-D and -E compared to group-C. These results showed that artificially cultured microorganisms could be efficiently transplanted into the soil and improve the mycobiota. Phytohormones were involved in improving O. sativa growth and rice yield via the submerged part-derived microbial medium (group-D) or the soil part-derived microbial medium (group-E) treatments. Collectively, these fungi and yeasts may be applied in microbial transplantation via rice straw fermentation to repair soil mycobiota imbalances, facilitating plant growth and sustainable agriculture. These fungi and yeasts may be applied in microbial transplantation to repair soil mycobiota imbalances and sustainable agriculture. Full article

In personalized nutrition, specific recommendations are often based on extensive phenotyping. In the world of microbiome research, classification is often based on the bacteriological composition of gut microbiota and enterotypes. We investigated if there is a possibility of translating outcomes from an intestinal screening platform to an intervention study that makes use of phenotyping. A 12-week double-blind, randomized, placebo-controlled, crossover intervention study (8-week wash-out period) with a dietary fiber mixture of acacia gum and carrot powder (ratio 3.33:1) was performed in healthy volunteers (N = 54, 45–70 years, BMI 27.3 ± 1.4) to modulate their microbiome. Fecal samples were collected every 4 weeks during the 32-week study period. Before and after the intervention a standardized mixed meal challenge was performed and plasma samples were taken (0, 30, 60, 120, and 240 min). Postprandial responses were used for sub-group cluster analysis to identify the metabolic phenotype. The individual participants’ samples were cultured anaerobically for 24 h with the mixture and the individual fibers. Compositional 16s rRNA data of exposed in vitro (24 h) and in vivo samples (4, 8, and 12 weeks) was compared and linked to the metabolic cluster analysis. The comparison between the clinical intervention’s effect on microbiota composition after 12 weeks and a single 24 h exposure in vitro showed a statistically significant association in microbiome effects between in vivo and in vitro exposures (p < 0.05) for the fiber intervention. Analysis of the metabolic postprandial responses revealed a division between improvement and deterioration in response to the fiber intervention indicating two distinct clusters (metabolic phenotypes). Cluster 1 contained the lowest triglycerides-, total cholesterol-, and non-esterified fatty acids responses, while cluster 2 contained the highest triglycerides- and total cholesterol responses. Interestingly, the beta diversity of the microbiota was linked to these two clusters, resembling two different responses to the fiber intervention. Our study in healthy individuals demonstrates that a short-term in vitro exposure of individual microbiome samples to the fiber mixture is predictive of a long-term in vivo effect and relates to a distinct phenotypic cluster. This paves the way for using the in vitro platform as a pre-screen for intervention studies. Full article

The most common bacterial isolates in dogs with pyothorax include mixed anaerobes, Enterobacteriaceae (especially Escherichia coli), Pasteurella spp., Streptococcus spp., and Staphylococcus spp. A fluoroquinolone with amoxicillin (±clavulanate) or a fluoroquinolone with clindamycin are the most commonly recommended empirical antimicrobials whilst pending bacterial culture of the pleural effusion. The aim of this study is to review and compare the pleural effusion culture and antimicrobial susceptibility results to the PROTECT ME poster and other published antimicrobial use guidelines. The medical records of 53 dogs diagnosed with pyothorax between 2014 and 2020 at two veterinary referral centres were reviewed. Information, including culture and susceptibility results, was assessed. Antimicrobial susceptibility panels varied; susceptibility to a particular antibiotic was calculated as a percentage of isolates tested against the same antibiotic. A total of 30 of 53 dogs (57.7%) had a positive pleural fluid culture. The most common isolates were Pasteurella species (23.3%), Escherichia coli (23.3%), and mixed anaerobes (20%). From the aerobic isolates, 73–83% were susceptible to a fluoroquinolone, 14/19 (74%) to amoxicillin, and 20/22 (91%) to potentiated amoxicillin. Resistance to clindamycin was documented in 9/13 (69%) aerobic isolates, with all Gram-negative bacteria (9/9) being resistant. The combination of potentiated amoxicillin with marbofloxacin would have been appropriate in most of the dogs (75–92.9%). This study shows a high rate of resistance to clindamycin, which is not a suitable option for monotherapy and may be less effective in combination therapy compared to potentiated amoxicillin. Full article

Antimicrobial photodynamic treatment (aPDT) with visible light plus water-filtered infrared-A irradiation (VIS-wIRA) and natural single- or multi-component photosensitizers (PSs) was shown to have potent antimicrobial activity. The aim of this study was to obtain information on the antimicrobial effects of aPDT-VIS-wIRA with lingonberry extract (LE) against bacteria that play a role in oral health. Planktonic bacterial cultures of the Gram-positive E. faecalis T9, S. mutans DSM20523, S. oralis ATCC 35037 and S. sobrinus PSM 203513, the Gram-negative N. oralis 14F2 FG-15-7B, F. nucleatum ATCC 25586, and V. parvula DSM, the anaerobic F. nucleatum ATCC 25586 and V. parvula DSM 2008, and the total mixed bacteria from pooled saliva and supra- and subgingival plaques of volunteers were all treated and compared. aPDT-VIS-wIRA with LE as PS significantly (p < 0.008) reduced the growth of all tested Gram-positive, Gram-negative, as well as aerobic and anaerobic bacterial strains, whereas without irradiation no reductions were seen (p < 0.0001). NaCl, with or without irradiation, was ineffective. After treatment with CHX 0.2%, the highest killing rate (100%) was observed, and no bacteria (0 log10 CFU) were cultivable. The method also significantly reduced all of the bacteria present in saliva and in the gingival biofilms. Three-dimensional visualization of viable and non-viable microorganisms revealed that LE penetrated deeper into the cell wall layers than CHX 0.2%. LE was an appropriate PS for eradicating microorganisms with VIS-wIRA, either in their planktonic form or in saliva and gingival plaque biofilms. These results encourage further investigation in order to determine which LE compounds contribute to the photosensitizing effect and to evaluate the size of the effect on maintaining oral health. Full article

Lactic acid bacteria (LAB) are excellent anaerobic fermenters that produce highly valuable grass-based animal feed containing essential nutrients. In the present study, an ensiling process was used to improve anaerobic fermentation in triticale silage under different moisture conditions with LAB. The triticale was treated with either a single bacterium or combined LAB and then vacuum-sealed. After 180 and 360 days of storage, the silage’s fermentation characteristics, microbial changes and nutrient contents were analyzed. The pH of the silage was significantly lower than the control silage. There was a significant difference in the pH values between the silages treated with single or mixed LAB. The LAB treatment led to a substantial increase in lactic acid (LA), a decrease in butyric acid (BA), and marginal levels of acetic acid (AA). The LA content after the mixed LAB treatment was significantly higher than that after the single culture LAB treatment. After single or combined inoculant treatments, the LAB population in the silage increased, while the yeast and mold levels decreased. These findings suggest that the addition of LAB to silage during ensiling could enhance the nutritional quality and reduce unwanted microbial growth. The mixed LAB treatments produced silage with a significantly higher nutritional value than the single LAB treatments. Full article

Infection with the foodborne pathogen Campylobacter is the leading bacterial cause of human foodborne illness in the United States. The objectives of this experiment were to test the hypothesis that mixed microbial populations from the bovine rumen may be better at excluding Campylobacter than populations from freshly voided feces and to explore potential reasons as to why the rumen may be a less favorable environment for Campylobacter than feces. In an initial experiment, C. jejuni cultures inoculated without or with freshly collected bovine rumen fluid, bovine feces or their combination were cultured micro-aerobically for 48 h. Results revealed that C. jejuni grew at similar growth rates during the first 6 h of incubation regardless of whether inoculated with the rumen or fecal contents, with rates ranging from 0.178 to 0.222 h⁻¹. However, C. jejuni counts (log₁₀ colony-forming units/mL) at the end of the 48 h incubation were lowest in cultures inoculated with rumen fluid (5.73 log₁₀ CFUs/mL), intermediate in cultures inoculated with feces or both feces and rumen fluid (7.16 and 6.36 log₁₀ CFUs/mL) and highest in pure culture controls that had not been inoculated with the rumen or fecal contents (8.32 log₁₀ CFUs/mL). In follow-up experiments intended to examine the potential effects of hydrogen and hydrogen-consuming methanogens on C. jejuni, freshly collected bovine feces, suspended in anaerobic buffer, were incubated anaerobically under either a 100% carbon dioxide or 50:50 carbon dioxide/hydrogen gas mix. While C. jejuni viability decreased <1 log₁₀ CFUs/mL during incubation of the fecal suspensions, this did not differ whether under low or high hydrogen accumulations or whether the suspensions were treated without or with the mechanistically distinct methanogen inhibitors, 5 mM nitrate, 0.05 mM 2-bromosulfonate or 0.001 mM monensin. These results suggest that little if any competition between C. jejuni and hydrogen-consuming methanogens exists in the bovine intestine based on fecal incubations. Full article

Antimony (Sb) is a harmful contaminant posing a risk to the environment and human health. Antimony-containing industrial wastewater often contains sulfate; therefore, it is suitable to apply sulfate-reducing bacteria (SRB) to remove Sb from such water. SRB anaerobically reduce sulfate to sulfide. Sb(V) is then reduced to Sb(III) by sulfide to produce an antimony trisulfide (Sb₂S₃) precipitate. This wastewater often exhibits a high salinity, which inhibits biological reactions. This study aimed to isolate and characterize a halotolerant bacterium capable of removing Sb from wastewater. A Desulfovibrio sp. strain was isolated from a mixed bacterial culture derived from a leachate sample from the Nam Son landfill in Vietnam. The isolated strain, NSLLH1b, removed 86% of the 50 mg/L of Sb(V) in 3 days at 180 mg/L of sulfate and 360 mg-C/L of lactate, at a pH of 7.0 and at 28 °C. It anaerobically removed >80% of the Sb(V) at 12.5–100 mg/L in 14 days at initial concentrations of >100 mg/L of sulfate, >250 mg-CL of lactate, and 0.2–15 g/L of NaCl, and a pH of 5–8, resulting in orange precipitation. An analysis using scanning electron microscopy–energy-dispersive X-ray spectroscopy confirmed that the precipitation consisted mainly of Sb and sulfur, supposedly as Sb₂S₃. This moderately halotolerant bacterium can be used for simultaneously removing Sb and sulfate from wastewater. Full article