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Keywords = YG-1 extract

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23 pages, 4407 KiB  
Article
Integration Viewpoint Using UHPLC-MS/MS, In Silico Analysis, Network Pharmacology, and In Vitro Analysis to Evaluate the Bio-Potential of Muscari armeniacum Extracts
by Nilofar Nilofar, Gokhan Zengin, Mehmet Veysi Cetiz, Evren Yildiztugay, Zoltán Cziáky, József Jeko, Claudio Ferrante, Tina Kostka, Tuba Esatbeyoglu and Stefano Dall’Acqua
Molecules 2025, 30(13), 2855; https://doi.org/10.3390/molecules30132855 - 4 Jul 2025
Viewed by 488
Abstract
The current study investigates the chemical profiling, antioxidant activities, and enzyme inhibitory and cytotoxic potential of the water and methanolic extracts of different parts (flower, leaf, and bulb) of Muscari armeniacum. Chemical profiling was performed using UHPLC-MS/MS. At the same time, different [...] Read more.
The current study investigates the chemical profiling, antioxidant activities, and enzyme inhibitory and cytotoxic potential of the water and methanolic extracts of different parts (flower, leaf, and bulb) of Muscari armeniacum. Chemical profiling was performed using UHPLC-MS/MS. At the same time, different in vitro assays were employed to support the results for antioxidant potential, such as DPPH, ABTS, FRAP, CUPRAC, metal chelation, and PBD, along with the measurement of total phenolic and flavonoid contents. Enzyme inhibition was investigated for cholinesterase (AChE and BChE), α-amylase, α-glucosidase, and tyrosinase enzymes. Additionally, the relative expression of NRF2, HMOX1, and YGS was evaluated by qPCR. LC-MS/MS analysis indicated the presence of some significant compounds, including apigenin, muscaroside, hyacinthacine A, B, and C, and luteolin. According to the results, the highest TPC and TFC were obtained with both extracts of the leaves, followed by the water extract (flower) and methanolic extract of the bulb. In contrast, the methanolic extract from the bulb exhibited the highest antioxidant potential using DPPH, ABTS, CUPRAC, and FRAP, followed by the extracts of leaves. In contrast, the leaf extracts had the highest values for the PBD assay and maximum chelation ability compared to other tested extracts. According to the enzyme inhibition studies, the methanolic extract from the bulb appeared to be the most potent inhibitor for all the tested enzymes, with the highest values obtained for AChE (1.96 ± 0.05), BChE (2.19 ± 0.33), α-amylase (0.56 ± 0.02), α-glucosidase (2.32 ± 0.01), and tyrosinase (57.19 ± 0.87). Interestingly, the water extract from the bulb did not inhibit most of the tested enzymes. The relative expression of NRF2 based on qPCR analysis was considerably greater in the flower methanol extract compared to the other extracts (p < 0.05). The relative expression of HMOX1 was stable in all the extracts, whereas YGS expression remained stable in all the treatments and had no statistical differences. The current results indicate that the components of M. armeniacum (leaves, flowers, and bulb) may be a useful source of natural bioactive compounds that are effective against oxidative stress-related conditions, including hyperglycemia, skin disorders, and neurodegenerative diseases. Complementary in silico approaches, including molecular docking, dynamics simulations, and transcription factor (TF) network analysis for NFE2L2, supported the experimental findings and suggested possible multi-target interactions for the selected compounds. Full article
(This article belongs to the Section Analytical Chemistry)
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16 pages, 12450 KiB  
Article
Investigation and Evaluation of Geothermal Resources in Northern Shanxi Province, China
by Zhongxu Lu, Yang Yang, Yajun Mo, Haizhi Liao and Youlian Cai
Energies 2025, 18(6), 1494; https://doi.org/10.3390/en18061494 - 18 Mar 2025
Viewed by 394
Abstract
In this study, survey methods including seismic techniques and controlled-source audio-frequency magnetotelluric, drilling, and pumping tests were employed to investigate the geothermal systems and their formation mechanisms in northern Shanxi Province, China. The following characteristics were observed: (1) Geothermal resources in northern Shanxi [...] Read more.
In this study, survey methods including seismic techniques and controlled-source audio-frequency magnetotelluric, drilling, and pumping tests were employed to investigate the geothermal systems and their formation mechanisms in northern Shanxi Province, China. The following characteristics were observed: (1) Geothermal resources in northern Shanxi Province are primarily located in Archean metamorphic rocks and fracture zone aquifer groups. The direct heat source is likely uncooled magma chambers in the middle-upper crust, whereas the overlying layers consist of Quaternary, Neogene, and Paleogene deposits. (2) The high-temperature geothermal system is of the convective-conductive type: atmospheric precipitation and surface water infiltrate pore spaces and fault fractures to reach thermal storage, where they are heated. Hot water then rises along the fracture channels and emerges as shallow hot springs, and ongoing extensional tectonic activity has caused asthenospheric upwelling. The partial melting of the upper mantle forms basic basaltic magma, which ascends to the middle-upper crust and forms multiple magma chambers. Their heat is transferred to the shallow subsurface, causing geothermal anomalies. (3) Borehole YG-1 findings revealed that these geothermal resources are primarily static reserves. Our findings provide a foundation for further geothermal development in the region, including the strategic deployment of wells to improve geothermal energy extraction. Full article
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16 pages, 2419 KiB  
Article
Evaluation of Physiological Activity of Long-Term Ripened Gouda Water Extract
by Woojin Ki, Gereltuya Renchinkhand, Hyoungchurl Bae and Myoung Soo Nam
Foods 2024, 13(21), 3446; https://doi.org/10.3390/foods13213446 - 29 Oct 2024
Viewed by 841
Abstract
This study investigated peptide changes and their bioactive functions through the long-term ripening of Gouda. Young Gouda (YG), medium Gouda (MG), and extra-sharp Gouda (EG) water extracts were prepared and functional peptides were recognized using liquid chromatography–high-resolution mass spectrometry. Two peptides with ACE-inhibitory [...] Read more.
This study investigated peptide changes and their bioactive functions through the long-term ripening of Gouda. Young Gouda (YG), medium Gouda (MG), and extra-sharp Gouda (EG) water extracts were prepared and functional peptides were recognized using liquid chromatography–high-resolution mass spectrometry. Two peptides with ACE-inhibitory effects (IQP and LQP) were identified in YG, while in MG and EG were identified eight (EL, IVP, VP, LPP, VIP, IPP, VPP, and VVPP) and six (EL, YL, VP, IR, YPEL, and DKIHPF) functional peptides, respectively. MG (70.26%) and EG (46.81%) showed stronger antioxidant activity than YG (25.99%) in ABTS (2,2′-azino-bis-(3-ethylbenzothiazoline-6-sulfonic) acid) inhibition, though the DPPH (2,2-diphenyl-1-picrylhydrazyl) inhibition rate decreased with ripening. The antihypertensive effect increased in MG (79.76%) and EG (94.50%) due to ACE-inhibitory peptides. Measurements of inflammatory mRNA expression levels and immunoblotting were conducted to assess the anti-inflammatory properties. MG and EG suppressed the transcription of IL-1β and IL-6 mRNA. Immunoblotting indicated that EG suppressed IκBα phosphorylation to 57%. The enhancement of bioactive function in the water-soluble part of long-term ripened Gouda cheese may have affected identified peptides as well as unknown peptides. Further studies are expected to aid in discovering these novel bioactive peptides. Full article
(This article belongs to the Section Dairy)
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15 pages, 3932 KiB  
Article
Whole Genome Sequencing Analysis of Model Organisms Elucidates the Association Between Environmental Factors and Human Cancer Development
by Shinya Hasegawa, Yutaka Shoji, Mamoru Kato, Asmaa Elzawahry, Momoko Nagai, Min Gi, Shugo Suzuki, Hideki Wanibuchi, Sachiyo Mimaki, Katsuya Tsuchihara and Yukari Totsuka
Int. J. Mol. Sci. 2024, 25(20), 11191; https://doi.org/10.3390/ijms252011191 - 17 Oct 2024
Viewed by 1311
Abstract
Determining a novel etiology and mechanism of human cancer requires extraction of characteristic mutational signatures derived from chemical substances. This study explored the mutational signatures of N-nitroso bile acid conjugates using Salmonella strains. Exposing S. typhimurium TA1535 to N-nitroso-glycine/taurine bile acid [...] Read more.
Determining a novel etiology and mechanism of human cancer requires extraction of characteristic mutational signatures derived from chemical substances. This study explored the mutational signatures of N-nitroso bile acid conjugates using Salmonella strains. Exposing S. typhimurium TA1535 to N-nitroso-glycine/taurine bile acid conjugates induced a predominance of C:G to T:A transitions. Two mutational signatures, B1 and B2, were extracted. Signature B1 is associated with N-nitroso-glycine bile acid conjugates, while Signature B2 is linked to N-nitroso-taurine bile acid conjugates. Signature B1 revealed a strong transcribed strand bias with GCC and GCT contexts, and the mutation pattern of N-nitroso-glycine bile acid conjugates in YG7108, which lacks O6-methylguanine DNA methyltransferases, matched that of the wild-type strain TA1535, suggesting that O6-methyl-deoxyguanosine contributes to mutations in the relevant regions. COSMIC database-based similarity analysis revealed that Signature B1 closely resembled SBS42, which is associated with occupational cholangiocarcinoma caused by overexposure to 1,2-dichlolopropane (1,2-DCP) and/or dichloromethane (DCM). Moreover, the inflammatory response pathway was induced by 1,2-DCP exposure in a human cholangiocyte cell line, and iNOS expression was positive in occupational cholangiocarcinomas. These results suggest that 1,2-DCP triggers an inflammatory response in biliary epithelial cells by upregulating iNOS and N-nitroso-glycine bile acid conjugate production, resulting in cholangiocarcinoma via DNA adduct formation. Full article
(This article belongs to the Special Issue Molecular Progression of Genome-Related Diseases)
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11 pages, 886 KiB  
Article
Direct Impact of the Air on Mutant Cells for Mutagenicity Assessments in Urban Environments
by Chiara Caredda, Elena Franchitti, Giorgio Gilli, Cristina Pignata and Deborah Traversi
Microorganisms 2024, 12(1), 3; https://doi.org/10.3390/microorganisms12010003 - 19 Dec 2023
Viewed by 1351
Abstract
Background: Urban air pollution is recognized as a critical problem for public health and is classified as a carcinogen for humans. A great number of studies have focused on the monitoring of urban air mutagenicity. One of the best-known and applied methods for [...] Read more.
Background: Urban air pollution is recognized as a critical problem for public health and is classified as a carcinogen for humans. A great number of studies have focused on the monitoring of urban air mutagenicity. One of the best-known and applied methods for assessing mutagenicity is the Ames test, a bacterial reverse mutation test. The classic protocol for assessing air mutagenicity involves the concentration of particulate matter (PM) on filters and subsequent extraction using organic solvents. This work aimed to develop a method for the evaluation of air mutagenicity directly impacted by air on microbial plates already containing an Ames’ microbial sensor. Methods: A specific six-month sampling campaign was carried out in Turin in a period with high air pollution. Samples were tested for mutagenicity on Salmonella typhimurium strains TA98, TA100, and YG1024 with the traditional method and with the new direct method. Results: The new protocol is able to evaluate the mutagenicity of the sampled air and obtain repeatable results. The final sensitivity is similar to the traditional method (≈10 net revertants/m3); however, the mutagenic response is due to the complete air pollution mixture, including volatile and semivolatile pollutants avoiding the concentration of filters and the following laborious extraction procedures. Conclusions. Despite some critical issues in contamination control, the method is easier, faster, and less expensive than traditional methods. Full article
(This article belongs to the Special Issue New Methods in Microbial Research 3.0)
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4 pages, 196 KiB  
Editorial
Natural Products and Disease Prevention, Relief and Treatment
by Md Soriful Islam
Nutrients 2022, 14(12), 2396; https://doi.org/10.3390/nu14122396 - 9 Jun 2022
Cited by 10 | Viewed by 2542
Abstract
This Special Issue focusses on the role of natural products in disease prevention, relief and treatment [...] Full article
(This article belongs to the Special Issue Natural Products and Disease Prevention, Relief and Treatment)
15 pages, 2137 KiB  
Review
Yuanhuacin and Related Anti-Inflammatory and Anticancer Daphnane Diterpenes from Genkwa Flos—An Overview
by Christian Bailly
Biomolecules 2022, 12(2), 192; https://doi.org/10.3390/biom12020192 - 23 Jan 2022
Cited by 20 | Viewed by 4487
Abstract
The dried flower buds of the plant Daphne genkwa Sieb. et Zucc. have been largely used in traditional Chinese medicine for the treatment of inflammatory diseases. Numerous diterpenoids have been isolated from the Genkwa Flos (yuanhua in Chinese), including a series of daphnane-type [...] Read more.
The dried flower buds of the plant Daphne genkwa Sieb. et Zucc. have been largely used in traditional Chinese medicine for the treatment of inflammatory diseases. Numerous diterpenoids have been isolated from the Genkwa Flos (yuanhua in Chinese), including a series of daphnane-type diterpene designated as yuanhuacin (YC, often improperly designated as yuanhuacine) and analogues with a patronymic name. The series includes ten daphnane-type diterpenes: yuanhuacin, yuanhuadin (YD), yuanhuafin (YF), yuanhuagin (YG), yuanhuahin (YH), yuanhuajin (YJ), yuanhualin (YL), yuanhuamin (YM), yuanhuapin (YP), and yuanhuatin (YT). They are distinct from the rare flavonoid yuanhuanin. The series comprises several anticancer agents, such as the lead compound YC, which has revealed potent activity in vitro and in vivo against models of lung and breast cancers. The main signaling pathways implicated in the antitumor effects have been delineated. Protein kinase C is a key factor of activity for YC, but in general the molecular targets at the origin of the activity of these compounds remain little defined. Promising anticancer effects have been reported with analogues YD and YT, whereas compounds YF and YP are considered more toxic. The pharmacological activity of each compound is presented, as well as the properties of Genkwa Flos extracts. The potential toxic effects associated with the use of these compounds are also underlined. Full article
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17 pages, 5023 KiB  
Article
YG-1 Extract Improves Acute Pulmonary Inflammation by Inducing Bronchodilation and Inhibiting Inflammatory Cytokines
by Hye-Yoom Kim, Jung-Joo Yoon, Dae-Sung Kim, Dae-Gill Kang and Ho-Sub Lee
Nutrients 2021, 13(10), 3414; https://doi.org/10.3390/nu13103414 - 28 Sep 2021
Cited by 9 | Viewed by 3551
Abstract
YG-1 extract used in this study is a mixture of Lonicera japonica, Arctic Fructus, and Scutellariae Radix. The present study was designed to investigate the effect of YG-1 extract on bronchodilatation (ex vivo) and acute bronchial and pulmonary inflammation relief [...] Read more.
YG-1 extract used in this study is a mixture of Lonicera japonica, Arctic Fructus, and Scutellariae Radix. The present study was designed to investigate the effect of YG-1 extract on bronchodilatation (ex vivo) and acute bronchial and pulmonary inflammation relief (in vivo). Ex vivo: The bronchodilation reaction was confirmed by treatment with YG-1 concentration-accumulation (0.01, 0.03, 0.1, 0.3, and 1 mg/mL) in the bronchial tissue ring pre-contracted by acetylcholine (10 μM). As a result, YG-1 extract is considered to affect bronchodilation by increased cyclic adenosine monophosphate, cAMP) levels through the β2-adrenergic receptor. In vivo: experiments were performed in C57BL/6 mice were divided into the following groups: control group; PM2.5 (fine particulate matter)-exposed group (PM2.5, 200 μg/kg/mL saline); and PM2.5-exposed + YG-1 extract (200 mg/kg/day) group. The PM2.5 (200 μg/kg/mL saline) was exposed for 1 h for 5 days using an ultrasonic nebulizer aerosol chamber to instill fine dust in the bronchi and lungs, thereby inducing acute lung and bronchial inflammation. From two days before PM2.5 exposure, YG-1 extract (200 mg/kg/day) was administered orally for 7 days. The PM2.5 exposure was involved in airway remodeling and inflammation, suggesting that YG-1 treatment improves acute bronchial and pulmonary inflammation by inhibiting the inflammatory cytokines (NLRP3/caspase-1 pathway). The application of YG-1 extract with broncho-dilating effect to acute bronchial and pulmonary inflammation animal models has great significance in developing therapeutic agents for respiratory diseases. Therefore, these results can provide essential data for the development of novel respiratory symptom relievers. Our study provides strong evidence that YG-1 extracts reduce the prevalence of respiratory symptoms and the incidence of non-specific lung diseases and improve bronchial and lung function. Full article
(This article belongs to the Special Issue Natural Products and Disease Prevention, Relief and Treatment)
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17 pages, 1540 KiB  
Article
Spatial Variability of Soil Phosphorus Indices under Two Contrasting Grassland Fields in Eastern Canada
by Jeff D. Nze Memiaghe, Athyna N. Cambouris, Noura Ziadi, Antoine Karam and Isabelle Perron
Agronomy 2021, 11(1), 24; https://doi.org/10.3390/agronomy11010024 - 24 Dec 2020
Cited by 9 | Viewed by 4352
Abstract
Phosphorus (P) is an essential nutrient for grassland production systems. However, continuous applications of P fertilizers result in soil P accumulations, increasing the risk of P losses in runoff and erosion. This study aims to investigate the field-scale variability of soil-test P (STP) [...] Read more.
Phosphorus (P) is an essential nutrient for grassland production systems. However, continuous applications of P fertilizers result in soil P accumulations, increasing the risk of P losses in runoff and erosion. This study aims to investigate the field-scale variability of soil-test P (STP) in two contrasting grassland fields using descriptive statistics and geostatistics for accurate recommendations on soil sampling strategy and sustainable approaches to P management. A young grassland (YG; 2 years) and an old grassland (OG; 10 years under permanent pasture) were classified as humo-ferric podzol and received organic fertilizers. Soil samples were collected in 16-m by 16-m triangular grids at two depths (0–5 and 5–20 cm). They were analyzed for available P and other soil elements extracted using the Mehlich-3 method (M3). The agri-environmental P saturation index (P/Al)M3 was calculated. Phosphorus accumulation was observed in OG (0–5 cm) as a result of long-term manure applications. Repeated applications of organic fertilizers can impact the long-term buildup of soil P, thus decreasing soil P va-riability and spatial dependence in permanent grasslands. A soil sampling strategy focusing on the 0–5 cm layer should be retained in permanent grasslands for sustainable P recommendations in Eastern Canada. Full article
(This article belongs to the Special Issue Sustainable Management and Utilization of Permanent Grassland)
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21 pages, 13574 KiB  
Article
Catabolism of Fibromodulin in Developmental Rudiment and Pathologic Articular Cartilage Demonstrates Novel Roles for MMP-13 and ADAMTS-4 in C-terminal Processing of SLRPs
by Cindy C Shu, Carl R Flannery, Christopher B Little and James Melrose
Int. J. Mol. Sci. 2019, 20(3), 579; https://doi.org/10.3390/ijms20030579 - 29 Jan 2019
Cited by 24 | Viewed by 5172
Abstract
Background: Cartilage regeneration requires a balance of anabolic and catabolic processes. Aim: To examine the susceptibility of fibromodulin (FMOD) and lumican (LUM) to degradation by MMP-13, ADAMTS-4 and ADAMTS-5, the three major degradative proteinases in articular cartilage, in cartilage development and in osteoarthritis [...] Read more.
Background: Cartilage regeneration requires a balance of anabolic and catabolic processes. Aim: To examine the susceptibility of fibromodulin (FMOD) and lumican (LUM) to degradation by MMP-13, ADAMTS-4 and ADAMTS-5, the three major degradative proteinases in articular cartilage, in cartilage development and in osteoarthritis (OA). Methods: Immunolocalization of FMOD and LUM in fetal foot and adult knee cartilages using an FMOD matrix metalloprotease (MMP)-13 neoepitope antibody (TsYG11) and C-terminal anti-FMOD (PR184) and anti-LUM (PR353) antibodies. The in vitro digestion of knee cartilage with MMP-13, A Disintegrin and Metalloprotease with Thrompospondin motifs (ADAMTS)-4 and ADAMTS-5, to assess whether FMOD and LUM fragments observed in Western blots of total knee replacement specimens could be generated. Normal ovine articular cartilage explants were cultured with interleukin (IL)-1 and Oncostatin-M (OSM) ± PGE3162689, a broad spectrum MMP inhibitor, to assess FMOD, LUM and collagen degradation. Results and Discussion: FMOD and LUM were immunolocalized in metatarsal and phalangeal fetal rudiment cartilages and growth plates. Antibody TsYG11 localized MMP-13-cleaved FMOD in the hypertrophic chondrocytes of the metatarsal growth plates. FMOD was more prominently localized in the superficial cartilage of normal and fibrillated zones in OA cartilage. TsYG11-positive FMOD was located deep in the cartilage samples. Ab TsYG11 identified FMOD fragmentation in Western blots of normal and fibrillated cartilage extracts and total knee replacement cartilage. The C-terminal anti-FMOD, Ab PR-184, failed to identify FMOD fragmentation due to C-terminal processing. The C-terminal LUM, Ab PR-353, identified three LUM fragments in OA cartilages. In vitro digestion of human knee cartilage with MMP-13, ADAMTS-4 and ADAMTS-5 generated FMOD fragments of 54, 45 and 32 kDa similar to in blots of OA cartilage; LUM was less susceptible to fragmentation. Ab PR-353 detected N-terminally processed LUM fragments of 39, 38 and 22 kDa in 65–80-year-old OA knee replacement cartilage. FMOD and LUM were differentially processed in MMP-13, ADAMTS-4 and ADAMTS-5 digestions. FMOD was susceptible to degradation by MMP-13, ADAMTS-4 and to a lesser extent by ADAMTS-5; however, LUM was not. MMP-13-cleaved FMOD in metatarsal and phalangeal fetal rudiment and growth plate cartilages suggested roles in skeletogenesis and OA pathogenesis. Explant cultures of ovine cartilage stimulated with IL-1/OSM ± PGE3162689 displayed GAG loss on day 5 due to ADAMTS activity. However, by day 12, the activation of proMMPs occurred as well as the degradation of FMOD and collagen. These changes were inhibited by PGE3162689, partly explaining the FMOD fragments seen in OA and the potential therapeutic utility of PGE3162689. Full article
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12 pages, 3618 KiB  
Article
Occurrence of Penicillium brocae and Penicillium citreonigrum, which Produce a Mutagenic Metabolite and a Mycotoxin Citreoviridin, Respectively, in Selected Commercially Available Rice Grains in Thailand
by Nozomi Shiratori, Naoki Kobayashi, Phitsanu Tulayakul, Yoshitsugu Sugiura, Masahiko Takino, Osamu Endo and Yoshiko Sugita-Konishi
Toxins 2017, 9(6), 194; https://doi.org/10.3390/toxins9060194 - 15 Jun 2017
Cited by 18 | Viewed by 8625
Abstract
Commercially available rice grains in Thailand were examined to isolate the monoverticillate Penicillium species responsible for toxic yellowed rice. Penicillium species were obtained from seven out of 10 rice samples tested. Among them, one Penicillium citreonigrum isolate and six Penicillium brocae isolates were [...] Read more.
Commercially available rice grains in Thailand were examined to isolate the monoverticillate Penicillium species responsible for toxic yellowed rice. Penicillium species were obtained from seven out of 10 rice samples tested. Among them, one Penicillium citreonigrum isolate and six Penicillium brocae isolates were morphologically identified. The P. citreonigrum isolate produced the mycotoxin citreoviridin on a yeast extract sucrose broth medium. Mycotoxin surveys showed that citreoviridin was not detected in any samples, but one out of 10 rice samples tested was positive for aflatoxin B1 at a level of 5.9 μg/kg. An Ames test revealed that methanol extracts from rice grains inoculated with selected P. brocae isolates were positive for strains TA100 and YG7108 of Salmonella typhimurium, suggesting the presence of base-pair substitution and DNA alkylation mutagens. Our data obtained here demonstrated that aflatoxin B1 and toxic P. citreonigrum were present on domestic rice grains in Thailand, although limited samples were tested. Penicillium brocae, which may produce mutagenic metabolites, was isolated for the first time from the surface of Thai rice grains. Full article
(This article belongs to the Section Mycotoxins)
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