Search Results (1,376)

Regenerative agriculture is oriented around restoring soil health through natural processes. In this context, soil biota plays a central role, and bioinoculation represents a potentially effective approach for targeted modification of microbial communities. Among beneficial microorganisms, Trichoderma atroviride is prominent for its biocontrol agent (BCA) activity against plant-parasitic nematodes (PPNs), whereas its effects on free-living nematodes (FLNs) under in vivo conditions remain insufficiently explored. The aim of this study was to assess the response of nematode communities to bioinoculation with T. atroviride as an indicator of soil functional status. A three-year field study was conducted in organic olive orchards at Vodnjan and Nadin on four autochthonous olive cultivars, applying two inoculum doses of T. atroviride: 1 × 10⁶ spores mL⁻¹ (LD) and 1 × 10⁸ spores mL⁻¹ (HD). Bioinoculation increased the diversity of the soil nematode communities at both locations. However, the responses differed between the two inoculum doses. Both doses were associated with an increased abundance of FLNs and a reduced abundance of herbivorous nematodes relative to the control, with LD showing a more consistent and ecologically favourable effect. In combination with biotic and abiotic factors, the LD dose was associated with greater trophic diversity and a more structured soil food web, whereas increasing the inoculum concentration (HD) did not result in additional functional improvement. Full article

Phosphorus (P) is a vital macronutrient involved in key biochemical processes that support plant growth; however, its low bioavailability in agricultural soils remains a major constraint on crop productivity. This limitation is commonly addressed through the application of chemical P fertilisers produced by acidulation of phosphate rock (PR), a process that is costly, energy-intensive, and environmentally hazardous. This study evaluated the P-solubilising potential of culture filtrates from three fungal strains (Aspergillus flavus JKJ7, Talaromyces purpureogenus JKJ12, and Trichoderma koningiopsis JKJ18) grown in National Botanical Research Institute’s Phosphate (NBRIP) liquid medium supplemented with tricalcium phosphate (TCP), and compared their TCP solubilisation efficiency with that of pure acids (citric and sulfuric acid). All three fungal strains solubilised TCP in NBRIP medium, with A. flavus JKJ7 producing the highest concentration of soluble P (259.81 mg L⁻¹), followed by T. koningiopsis JKJ18 (166.41 mg L⁻¹) and T. purpureogenus JKJ12 (47.07 mg L⁻¹). Soluble P concentrations were inversely correlated with pH and positively correlated with titratable organic acidity (TOA). High-performance liquid chromatography (HPLC) identified citric, succinic, tartaric, and gluconic acids as the dominant organic acids associated with P solubilisation. In pure acid treatments, sulfuric acid exhibited concentration-dependent increases in soluble P, whereas citric acid showed reduced solubilisation efficiency at higher concentrations. Although fungal culture filtrates achieved lower maximum TCP solubilisation than strong mineral acids, their higher TOA contributed to improved stabilisation of soluble P by limiting calcium-mediated reprecipitation. These findings demonstrate that crude fungal organic acid mixtures can complement or partially substitute inorganic acids for mobilising P from low-reactivity PR, offering a potentially cost-effective and environmentally sustainable alternative for P fertiliser production. This study supports the development of biologically derived P inputs aligned with circular bioeconomy and sustainable agriculture goals. Full article

In Brazil, the olive tree (Olea europaea) is propagated by cuttings using indole-3-butyric acid (IBA) for rooting and sand as the substrate. Auxin-producing microorganisms may enhance this process when applied together with IBA. This study evaluated the rooting capacity of cuttings from four olive cultivars—Arbequina, Maria da Fé, Ascolano 315, and Koroneiki—treated with commercial products based on microorganisms, plus IBA. The biostimulants used were Bacillus amyloliquefaciens, Bacillus licheniformis, Bacillus subtilis, Trichoderma harzianum, and the commercial product Bioraiz^® (a mixed mineral fertilizer) in liquid formulation. Trichoderma harzianum and Bacillus spp. improved the quality of rooted cuttings, promoting the formation of more roots per cutting (about 10) and longer roots, on average of 8.1 cm in the cultivars Maria da Fé, Ascolano 315, and Arbequina. Cuttings treated with Trichoderma harzianum, Bacillus subtilis, and Bacillus licheniformis produced higher percentages of rooted cuttings, over 50%, and more developed root systems. Conversely, the control and Bioraiz^® showed weaker rooting performance, producing fewer than seven roots per cutting. Overall, the results highlight the potential of biostimulant applications, such as Trichoderma and Bacillus subtilis, as promising tools to optimize the rooting of olive tree cuttings, whereas the fertilizer showed limited effectiveness in promoting rooting. Full article

Mediterranean agroforestry systems (AFSs), typified by the Iberian Dehesas and Portuguese Montados, are multifunctional landscapes where Quercus species act as ecological keystones sustaining biodiversity, soil fertility, and rural livelihoods. These systems are increasingly affected by complex oak decline syndromes driven by drought, soil degradation, and climate-induced pathogen outbreaks. Conventional chemical controls are often ineffective and environmentally detrimental, underscoring the need for ecologically sound management alternatives. This review synthesizes recent advances in the application of microbial biological control agents (MBCAs) to manage diseases in Mediterranean Quercus species, including Q. ilex, Q. suber, Q. faginea, and Q. pyrenaica. We conducted a structured literature review using predefined keyword searches in Web of Science and Scopus, followed by the screening of records to identify 22 relevant peer-reviewed studies on microbial disease control in Mediterranean Quercus species. We identified 20 peer-reviewed studies that reported that MBCAs—primarily from Bacillus, Serratia, Streptomyces, Trichoderma, Simplicillium and Alternaria—exert biocontrol effects through antibiosis, mycoparasitism, competition for ecological niches, and the induction of host defense responses. Although most experiments were conducted in vitro, some demonstrated significant disease suppression in seedlings infected by Phytophthora cinnamomi, Diplodia corticola, and Biscogniauxia mediterranea. Future research should integrate field-based validation and microbiome-oriented forest management approaches to enable the operational use of microbial-based disease control strategies in AFS landscapes. Full article

Pomegranate dieback is a disease whose etiology remains only partially understood. In this study, surveys were carried out in orchards located in the Apulia, Basilicata, and Veneto regions from 2016 to 2020 with the objective to identify pathogens involved in pomegranate dieback. Six fungal species were isolated from symptomatic trees and identified through morphological and molecular analyses. In addition to the known pomegranate pathogens Neofusicoccum parvum, Diaporthe eres and D. foeniculina, new fungal species, including Neopestalotiopsis rosae, Sporothrix stenoceras, and one belonging to the Xenoacremonium genus, were identified. This study represents the first report of their association with pomegranate plants exhibiting dieback symptoms. When artificially inoculated on pomegranate trees, these fungi caused wood browning, proving their pathogenicity. All fungal species exhibited optimal growth in the temperature range 25–30 °C, although D. eres and N. roseae showed a good adaptability in the range 5–10 °C. Since some of the identified pathogens were isolated from the same trees, cross-pairing assays were conducted, revealing that these fungi can coexist within the same ecological niche while maintaining their viability. Given the need for sustainable management options against these co-occurring pathogens, biological control strategies were evaluated. In vitro experiments demonstrated that both Bacillus and Trichoderma biological control agents (BCAs) inhibit the investigated pomegranate pathogens, highlighting their potential inclusion in integrated management strategies targeting these newly identified fungal pathogens. Full article

Mutualistic interactions between plants and beneficial fungi rely on extensive transcriptional reprogramming in both partners, yet the underlying regulatory mechanisms coordinating these responses remain incompletely understood. Here, we combined a transcriptomics analysis with a gene regulatory network (GRN) inference to dissect the interaction between Arabidopsis thaliana and the growth-promoting fungus Trichoderma atroviride. At an early but established stage of colonization (72 h post-inoculation), we identified widespread transcriptional changes in both of the organisms, including host activation of hypoxia, stress and root development-related pathways in Arabidopsis, and fungal reprogramming of membrane transport and primary metabolism. Using DNA-binding motifs and GENIE3-based regulatory inference, we reconstructed interaction-specific GRNs for each species. The subnetworks focused on the main differentially expressed biological processes and uncovered ERF-, WRKY-, NAC- and DOF-centered modules linking hypoxia responses with developmental remodeling in the plant, whereas the putative orthologs of TFs involved in developmental and stress-related TFs in fungi, such as CrzA, RME1, NsdC, PacC and RPN4, formed a regulatory core coordinating fungal transport and metabolic adjustment. In parallel, we uncovered contrasting sRNA dynamics between the partners. While the Arabidopsis sRNA changes were limited, T. atroviride exhibited a strong induction of 20–22 nt sRNAs, including a small set of high-confidence sRNA–mRNA interactions targeting host genes involved in root function and immunity. Together, our results extend previous pathway-based descriptions of the Arabidopsis–Trichoderma mutualism and provide a systems-level, testable framework for how coordinated regulatory programs in both of the partners support the interaction. Full article

Soil salinity is a major constraint on global agricultural productivity. This study evaluated the efficacy of a cell-free extract from Trichoderma hamatum (designated BEYF) in enhancing salt stress tolerance in lettuce (Lactuca sativa). Lettuce plants under normal and salt-stressed conditions exposed to 200 mM NaCl were treated with either water or YF (the working solution of BEYF) at concentrations of 0.05, 0.10, and 0.25 mg/L. Compared to the control, YF application significantly improved plant growth under salt stress, as indicated by increased plant height, biomass, leaf area, and other agronomic traits. Physiologically, YF mitigated oxidative membrane damage, as indicated by reduced electrolyte leakage and malondialdehyde (MDA) content, while promoting the accumulation of the osmoprotectant proline. Histochemical staining further confirmed that YF effectively suppressed hydrogen peroxide (H₂O₂) accumulation and preserved cell viability under salt stress. At the molecular level, YF significantly up-regulated the expression of key stress-responsive genes, including those involved in abscisic acid biosynthesis (NCED1, NCED2), signaling (WRKY58), and proline synthesis (P5CSs). Collectively, our findings demonstrate that BEYF enhances lettuce salt tolerance through integrated physiological, cellular, and transcriptional adaptations, supporting its potential as a sustainable biostimulant for improving crop cultivation in saline soils. Full article

The utilization of microorganisms as biocontrol agents represents a sustainable alternative to agrochemicals. Trichoderma spp. has been identified as a fungus that promotes plant growth and suppresses phytopathogens. Nonetheless, conventional commercial formulations are constrained by factors such as their limited shelf life, environmental sensitivity, and inadequate carrier systems. In this study, Trichoderma harzianum (T22) and T. viride (T18) strains were encapsulated in a hydrogel composed of chitosan, gelatin, and polyvinyl alcohol, which was prepared by pH-induced gelation via alkaline precipitation. The characterization of the hydrogels was conducted in several domains. Initially, the water absorption of the samples was examined at varying pH values. Secondly, the morphology of the samples was investigated using scanning electron microscopy (SEM) and stereo microscopy. Thirdly, the chemical interactions in the hydrogels were analyzed by Fourier-transform infrared spectroscopy (FTIR). The final stage of the experiment involved assessing the degradation behaviour of the hydrogels in both sterile and inoculated soils. The efficacy of the isolates in protecting chilli plants from Phytophthora capsici was subsequently evaluated. As demonstrated in the extant research, encapsulation techniques have been shown to preserve the viability of fungal organisms and promote their growth after 10 days of storage at ambient temperature. These effects have been observed to exhibit strain-dependent variations. It is noteworthy that hydrogels loaded with T. viride (HT18) induced resistance against P. capsici, resulting in complete symptom suppression and enhanced plant growth, whereas hydrogels loaded with T. harzianum (HT22) showed no protective effect. These results demonstrate the potential of the hydrogel formulated with T18 as an effective carrier, as it maintains Trichoderma spp. viability and protects chilli plants against P. capsici infection. Full article

Soil management is crucial for addressing soil-borne pathogens, weeds, and pests, ensuring sustainable crop productivity. Traditional chemical fumigants, such as methyl bromide, have been effective but pose serious environmental risks, including ozone depletion and reduced soil biodiversity. Consequently, attention has shifted toward more sustainable alternatives. Techniques like soil solarization, anaerobic soil disinfestation (ASD), biofumigation, and the use of biological control agents (BCAs) offer environmentally friendly options for managing soil-borne diseases. Steam and microwave disinfestation are also promising techniques; however, further development is required to improve their practical efficiency. Integrated management approaches, which combine multiple interventions, have proven particularly effective, offering flexibility and enhancing control through complementary techniques. Additionally, emerging technologies such as artificial intelligence and hyperspectral imaging provide new opportunities for real-time monitoring and decision-support to optimize the timing and targeting of pest management interventions. This review emphasizes the potential of sustainable soil pest control methods to reduce reliance on chemical fumigants, improve crop yield and quality, and support environmentally responsible farming practices. It also examines the challenges associated with scalability, cost, and variable effectiveness, while outlining the strengths, weaknesses, and mechanisms of each method. Further research on regional adaptation, technological integration, and long-term impacts is essential to fully optimize these innovative solutions for food security and sustainable agriculture. Full article

Tomato late blight caused by Phytophthora infestans is a devastating disease, and current control of the disease relies heavily on chemical fungicides. Certain Trichoderma strains used as biocontrol fungi have shown superb efficacy against P. infestans and some other oomycete phytopathogens. In this study, T. paratroviride strain 8942 appeared to be effective in control of tomato late blight disease, reducing the necrosis degree of plant tissues, promoting callose deposition in tomato leaves, and increasing defense enzyme activities. RT-qPCR analysis showed that strain 8942 inhibited metabolism of salicylic acid and promoted metabolism of jasmonic acid at the early stage of colonization. In addition, root colonization of the strain significantly promoted tomato growth. Observations of rhizosphere soil properties showed that 8942 significantly increased the activities of urease, catalase, and protease, and its cell-free filtrates at low concentrations induced the accumulation of auxin in root tips. Transcriptomic data suggested the existence of a balance between biotrophic adaptation and biocontrol readiness during 8942’s interaction with tomato roots. Trichoderma paratroviride strain 8942 is promising and has potential for biological control of tomato late blight and plant growth promotion, as determined by integrated investigations of hormonal regulation, rhizosphere modulation, transcriptional reprogramming, etc. Full article

Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici, threatens global wheat production, with climate change intensifying its spread. This meta-analysis, following PRISMA protocol, evaluated chemical and biological control methods through a systematic review of literature (2005–2025), identifying 12 peer-reviewed studies with 156 experimental comparisons under various conditions. Random effects models assessed treatment impacts on disease severity and grain productivity using standardized mean differences (SMDs). Chemical control significantly reduced stripe rust severity (SMD = −1.04) and improved productivity (SMD = 1.30), with low to moderate variability and consistent yield responses. Effectiveness varied by active ingredients and wheat types, with the greatest benefits in highly susceptible varieties. Biological control agents, particularly Bacillus, Pseudomonas, and Trichoderma species, also reduced disease severity (SMD = −2.19) and increased yield (SMD = 2.39), though with greater heterogeneity reflecting strain-specific and environmental effects. Chemical fungicides provided more predictable disease control, while biological agents offered significant yield increases with agroecological benefits. This meta-analysis demonstrates complementary roles for both approaches, strongly supporting integrated disease management combining plant resistance, optimal fungicide use, and strategic biological control to enhance resilience and sustainability of global cereal production systems. Full article

This study aimed to develop biofumigation strategies against chestnut fruit rot caused by Botryosphaeria dothidea. An endophytic strain, FPYF2509, was isolated from Castanea mollissima fruit and identified as Trichoderma nordicum using morphological and phylogenetic (tef1, rpb2) analyses. Antifungal volatile organic compounds (VOCs) were analyzed using headspace solid-phase microextraction and gas chromatography–mass spectrometry during dual-culture interactions with pathogens. The volatiles from the interaction exhibited to inhibit pathogen growth. Particularly an induced myrtenol, demonstrated strongly biofumigation activity in vitro, with a lowest observed effect concentration of 0.02 µL/mL, minimum inhibitory concentration and a minimum fungicidal concentration of 0.2 µL/mL against B. dothidea. In vivo, fumigation with 0.2 µL/mL myrtenol significantly reduced disease incidence from 83.3% to 17.39%, achieving a 79.1% control efficacy. This work presents endophytic T. nordicum FPYF2509 as a promising biocontrol agent and identifies myrtenol, of fungal interaction origin, as a novel and effective mycofumigant for postharvest disease management. Full article

Fermented grains (FGs) for Chinese strong-flavor Baijiu (CSFB) serve as both microbial habitats and flavor sources, yet the correlations among fungal communities, physicochemical properties, and volatiles during long-term fermentation remain insufficiently understood. To address this gap, this study employed Illumina HiSeq high-throughput sequencing, physicochemical analysis, and GC-MS for systematic investigation. Fermentation was divided into early, middle, and late stages based on FGs’ physicochemical dynamics and eukaryotic microbial diversity. A total of 9 fungal phyla and 195 genera were detected, with 12 dominant genera (e.g., Thermoascus, Aspergillus, Kazachstania). Forty-seven volatiles were identified, showing increasing diversity and richness. Redundancy Analysis revealed total acids exerted the most significant effect on dominant fungal succession, while network analysis screened 10 key genera (e.g., Mortierella, Trichoderma) pivotal for community structure. Additionally, Trichoderma, Fusarium and other genera correlated with important flavors like 1-butanol and 1-hexanol. This study clarifies the complex interactions in FGs, provides theoretical support for CSFB quality improvement via biofortification or environmental control, and offers a reference for revealing the ecological mechanisms underlying FG microbial community assembly. Full article

Background/Objectives: Apple pomace, a major by-product of juice production, represents both an environmental burden and an underutilized resource. This study aimed to enhance the nutritional value of apple pomace via solid-state fermentation (SSF) to develop a functional feed ingredient and systematically evaluate its effects on growth, metabolism, and intestinal health in weaned piglets. Methods: Apple pomace was fermented using a multi-species consortium (Geotrichum candidum, Saccharomyces cerevisiae, Rhizopus oryzae, Bacillus subtilis, and Trichoderma viride). A total of 180 weaned piglets were fed iso-nitrogenous diets containing 0, 2, 4, 6, 8, or 10% fermented apple pomace for 35 days. Growth performance, serum biochemical and immuno-antioxidant indices, diarrhea incidence, jejunal morphology, and fecal microbiota were analyzed. Results: Dietary fermented apple pomace supplementation showed dose-dependent effects. The 8% fermented apple pomace group exhibited optimal growth performance, with increased average daily gain and feed intake and reduced feed-to-gain ratio (p < 0.05). Serum analysis indicated enhanced protein synthesis, antioxidant capacity (T-AOC, SOD, GSH-Px), and immunoglobulin levels (IgA, IgG, IgM), along with reduced urea nitrogen and oxidative stress marker MDA. This group also had the lowest diarrhea rate, associated with improved jejunal villus morphology. Microbiota analysis revealed that 8% fermented apple pomace effectively increased α-diversity, promoted beneficial bacteria (e.g., lactic acid bacteria and butyrate-producing Clostridium sensu stricto_1), and suppressed pathogens (Escherichia coli, Salmonella, Streptococcus). Conclusions: Multi-species SSF successively enhanced the nutritional profile of apple pomace. Inclusion at 8% showed the most favorable response in terms of growth performance, metabolic profile, and immune–antioxidant status in weaned piglets, mediated through improved intestinal morphology and targeted modulation of the gut microbiota toward a more diverse and beneficial ecosystem. These findings support the high-value, functional utilization of apple pomace as a feed additive in swine nutrition. Full article

Tyrosinase (EC 1.14.18.1) is a binuclear copper enzyme responsible for the rate-limiting steps of melanogenesis, catalyzing the hydroxylation of L-tyrosine and oxidation of L-DOPA into o-quinones that polymerize melanin. Beyond its physiological role in pigmentation, tyrosinase is also implicated in food browning and oxidative stress–related disorders, making it a key target in cosmetic, food, and biomedical industries. This systematic review, conducted following PRISMA guidelines, aimed to identify and analyze microbial metabolites with tyrosinase inhibitory potential as sustainable alternatives to conventional inhibitors such as hydroquinone and kojic acid. Literature searches in Scopus and Web of Science (March 2025) yielded 156 records; after screening and applying inclusion criteria, 11 studies were retained for analysis. The inhibitors identified include indole derivatives, phenolic acids, peptides, and triterpenoids, mainly produced by fungi (e.g., Ganoderma lucidum, Trichoderma sp.), actinobacteria (Streptomyces, Massilia), and microalgae (Spirulina, Synechococcus). Reported IC₅₀ values ranged from micromolar to milli-molar levels, with methyl lucidenate F (32.23 µM) and p-coumaric acid (52.71 mM). Mechanisms involved competitive and non-competitive inhibition, as well as gene-level regulation. However, methodological heterogeneity, the predominance of mushroom tyrosinase assays, and limited human enzyme validation constrain translational relevance. Computational modeling, site-directed mutagenesis, and molecular dynamics are proposed to overcome these limitations. Overall, microbial metabolites exhibit promising efficacy, stability, and biocompatibility, positioning them as emerging preclinical candidates for the development of safer and more sustainable tyrosinase inhibitors. Full article