Search Results (6)

Background/Objectives: Scutiger ningshanensis (Fang, 1985) is an endemic Chinese amphibian species within the genus Scutiger (Megophryidae). Despite its ecological significance, its mitochondrial genome architecture and evolutionary relationships remain poorly understood. Given the high structural variability in Megophryidae mitogenomes and unresolved phylogenetic patterns in Scutiger, this study aims to (1) characterize the complete mitogenome of S. ningshanensis, (2) analyze its molecular evolution, and (3) clarify its phylogenetic position and divergence history within Megophryidae. Methods: The complete mitochondrial genome was sequenced and annotated, followed by analyses of nucleotide composition, codon usage bias, and selection pressures (Ka/Ks ratios). Secondary structures of rRNAs and tRNAs were predicted, and phylogenetic relationships were reconstructed using maximum likelihood and Bayesian methods. Divergence times were estimated using molecular clock analysis. Results: The mitogenome of S. ningshanensis is 17,282 bp long, encoding 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs, and a control region, with a notable AT bias (61.05%) with nucleotide compositions of T (32.51%), C (24.64%), G (14.3%), and A (28.54%). All tRNAs exhibited cloverleaf structures except trnS1, which lacked a DHU stem. Phylogenetic analysis confirmed the monophyly of Scutiger, forming a sister clade to Oreolalax and Leptobrachium, and that S. ningshanensis and S. liubanensis are sister species with a close evolutionary relationship. Positive selection was detected in Atp8 (Ka/Ks > 1), suggesting adaptation to plateau environments, while other PCGs underwent purifying selection (Ka/Ks < 1). Divergence time estimation placed the origin of Megophryidae at~47.97 MYA (Eocene), with S. ningshanensis diverging~32.67 MYA (Oligocene). Conclusions: This study provides the first comprehensive mitogenomic characterization of S. ningshanensis, revealing its evolutionary adaptations and phylogenetic placement. The findings enhance our understanding of Megophryidae’s diversification and offer a genomic foundation for future taxonomic and conservation studies. Full article

A new species of Asian horned toad, Boulenophrys, is described from Yongzhou City, Hunan Province, China. The species is a phylogenetically sister to B. yunkaiensis, based on 16S rRNA and COI genes. The new species differs from its congeners, possessing the following combination of characters: (1) moderate body size: SVL 37.6–40.2 mm (38.9 ± 1.3, n = 7) in adult males and SVL 41.8–45.9 mm (43.6 ± 2.1, n = 3) in adult females; (2) tympanum boundary clear: TD/ED 0.48–0.57 in males and 0.47–0.57 in females; (3) the presence of a small horn-like tubercle at the edge of the upper eyelid; (4) vomerine ridge present and vomerine teeth absent; (5) margin of tongue rounded, not notched posteriorly; (6) rough dorsal skin: a discontinuous “V”-shaped ridge with two discontinuous dorsolateral ridges on two sides on the back, dense tubercles on the skin of the ventral surface of the dorsal shank and thigh, and spiny tubercles surrounding the cloaca; (7) slender hindlimbs with heels overlapping when the flexed hindlimbs are held at right angles to the body axis; tibio-tarsal articulation reaching forward between anterior margin of tympanum and posterior corner of eye when leg stretched forward; (8) relative finger length IV < II < I < III, with a subarticular tubercle present at the base of each finger; (9) distinct supernumerary tubercles below the base of I and II toes; (10) toes without lateral fringes and with rudimentary webbing (webbing formula: I1 − 1-II1 − 2-III2 − 3IV3- − 2V). Full article

The Qinghai–Tibet Plateau (QTP) is the highest and largest mountain plateau in the world, which has become a focus area of amphibian biodiversity research and conservation, depending on its large number of endemic and threatened species. Among the 58 families of Anura, only a few species of four families (Megophryidae, Bufonidae, Dicroglossidae, Ranidae) are distributed in QTP. Revealing the genetic diversity of these species is crucial for research on their environmental adaptability and biodiversity conservation. Chromosome rearrangements are a critical source of genetic variation, which is recognized as a driver of speciation, providing the genetic material for differentiation and environmental adaptation of amphibians. Here, we identified the karyotypes of 10 species of the above families from the QTP. The karyotypes of these species were obtained from new sites that were not previously reported. Among them, the karyotypes of D. himalayanus and tetraploid B. zamdaensis were reported for the first time. In particular, the ploidy of B. zamdaensis from Zanda, China, was found to be distinctly different from the ploidy from Spiti River, India. This indicates that they have presented species differentiation and supports the multiple and complicated polyploidization events in the Bufotes toads. Furthermore, the different locations of the secondary constriction between the Weixi and Zhongdian populations of O. xiangchengensis support that there is a karyotypic variation between the two subspecies (O. xiangchengensis xiangchengensis vs. O. xiangchengensis deqinicus). A series of chromosomal variations may have facilitated the rapid evolution of amphibians in the QTP, and our study will provide support for further research on amphibian genetic diversity and biodiversity conservation. Full article

The mustache toads Leptobrachium boringii and Leptobrachium liui are two attractive species in Megophryidae, in which adult males have mustache-like keratinized nuptial spines on their upper lip. However, both are under threat due to multiple factors, of which scientific studies are still very limited. In this study, two new complete mitochondrial genomes of L. boringii and L. liui were sequenced, assembled, and annotated based on next-generation sequencing. The mitogenome lengths of L. boringii and L. liui were found to be 17,100 and 17,501 bp, respectively, with both containing 13 protein coding genes, 23 tRNAs, 2 rRNAs, and 1 non-coding control region. Nucleotide diversity analyses indicate that atp8, atp6, and nad2 showed higher nucleotide diversity than cox1, cox3, and cytb. The intraspecific genetic distances among three different populations of L. boringii exceed 4%, and those between two populations of L. liui reach 7%. Phylogenetic relationships support their division into two subfamilies of Megophryidae (Leptobrachiinae and Megophryinae) as well as two species groups within Leptobrachium, corresponding to the number of keratinized nuptial spines (10–48 in the L. boringii species group vs. 2–6 in the L. liui species group). The two new mitogenomes reported in this study provide valuable data for future molecular evolutionary and conservation studies of the genus Leptobrachium and other Megophryidae toads. Full article

Persisting declination of amphibians around the world has resulted in the public attaching importance to the conservation of their biodiversity. Genetic data can be greatly helpful in conservation planning and management, especially in species that are small in size and hard to observe. It is essential to perform genetic assessments for the conservation of Leptobrachium leishanense, an endangered toad and receiving secondary protection on the list of state-protected wildlife in China. However, current molecular markers with low reliability and efficiency hinder studies. Here, we sampled 120 adult toes from the population in the Leishan Mountain, 23 of which were used to develop tetranucleotide microsatellite markers based on one reference L. leishanense genome. After primer optimization, stability detection, and polymorphism detection, we obtained 12 satisfactory microsatellite loci. Then, we used these loci to evaluate the genetic diversity and population dynamics of the 120 individuals. Our results show that there is a low degree of inbreeding in the population, and it has a high genetic diversity. Recently, the population has not experienced population bottlenecks, and the estimated effective population size was 424.3. Accordingly, stabilizing genetic diversity will be key to population sustainability. Recovering its habitat and avoiding intentional human use will be useful for conservation of this species. Full article

The Himalayas are one of earth’s hotspots of biodiversity. Among its many cryptic and undiscovered organisms, including vertebrates, this complex high-mountain ecosystem is expected to harbour many species with adaptations to life in high altitudes. However, modern evolutionary genomic studies in Himalayan vertebrates are still at the beginning. Moreover, in organisms, like most amphibians with relatively high DNA content, whole genome sequencing remains bioinformatically challenging and no complete nuclear genomes are available for Himalayan amphibians. Here, we present the first well-annotated multi-tissue transcriptome of a Greater Himalayan species, the lazy toad Scutiger cf. sikimmensis (Anura: Megophryidae). Applying Illumina NextSeq 500 RNAseq to six tissues, we obtained 41.32 Gb of sequences, assembled to ~111,000 unigenes, translating into 54362 known genes as annotated in seven functional databases. We tested 19 genes, known to play roles in anuran and reptile adaptation to high elevations, and potentially detected diversifying selection for two (TGS1, SENP5) in Scutiger. Of a list of 37 genes, we also identify 27 candidate genes for sex determination or sexual development, all of which providing the first such data for this non-model megophryid species. These transcriptomes will serve as a valuable resource for further studies on amphibian evolution in the Greater Himalaya as a biodiversity hotspot. Full article